FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJB6_HUMAN (DnaJ homolog subfamily B member 6 OS=Homo sapiens GN=DNAJB6 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNP-NDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 404
            +YY+VLGV   AS  +IKKAY   A K HPDKNP N   A + F+ + EAY+VLSD  +R  YD YGK G++
Sbjct:    3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLN 74          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJB6_CHICK (DnaJ homolog subfamily B member 6 OS=Gallus gallus GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 38/71 (53.52%), Postives = 47/71 (66.20%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNP-NDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI 401
            +YY+VLGV   AS  +IKKAY   A K HPDKNP N   A Q F+ + EAY+VLSD  +R  YD +GK G+
Sbjct:    3 DYYEVLGVQKHASAEDIKKAYRKLALKWHPDKNPENKEEAEQQFKQVAEAYEVLSDAKKRDIYDRFGKEGL 73          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJB6_BOVIN (DnaJ homolog subfamily B member 6 OS=Bos taurus GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNP-NDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 404
            +YY+VLGV   AS  +IKKAY   A K HPDKNP N   A + F+ + EAY+VLSD  +R  YD YGK G++
Sbjct:    3 DYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDRYGKEGLN 74          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNJ39_ARATH (Chaperone protein dnaJ 39 OS=Arabidopsis thaliana GN=ATJ39 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 3
Query:  198 YDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTE 410
            Y+VLG+   +++ EIK AY   A + HPDKNP+DP+AA+ F+ +  AY+VLSDP  R+ YD  G   +  E
Sbjct:   25 YEVLGIPSNSTDQEIKSAYRRMALRYHPDKNPDDPVAAEMFKEVTFAYEVLSDPENRRLYDTTGSEAVGPE 95          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_XYLFM (Chaperone protein dnaJ OS=Xylella fastidiosa (strain M12) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 40/96 (41.67%), Postives = 56/96 (58.33%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG----KSGISTEAIIDPAAIFAMLFGS 455
            + + +YY VLGV  TASE ++KKAY   A K HPD+NP D  A   F+   EAY+VL+D  +R+ YD +G    + G+      D   IF  +FG+
Sbjct:    1 MSKRDYYQVLGVPRTASEDDLKKAYRRCAMKYHPDRNPGDAAAEAAFKECKEAYEVLADTKKRKLYDTHGHAAFEHGVGGGNAPDMNDIFGDIFGN 96          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_XYLFA (Chaperone protein dnaJ OS=Xylella fastidiosa GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 40/96 (41.67%), Postives = 56/96 (58.33%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG----KSGISTEAIIDPAAIFAMLFGS 455
            + + +YY VLGV  TASE ++KKAY   A K HPD+NP D  A   F+   EAY+VL+D  +R+ YD +G    + G+      D   IF  +FG+
Sbjct:    1 MSKRDYYQVLGVPRTASEDDLKKAYRRCAMKYHPDRNPGDAAAEAAFKECKEAYEVLADTKKRKLYDTHGHAAFEHGVGGGNAPDMNDIFGDIFGN 96          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_XANOR (Chaperone protein dnaJ OS=Xanthomonas oryzae pv. oryzae GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            + + +YY+VLGV+  AS+ E+KKAY   A K HPD+NP D  A   F+   EAY+VLSD  +R+AYDA+G
Sbjct:    1 MSKRDYYEVLGVARGASDEELKKAYRRCAMKHHPDRNPGDAAAEAAFKECKEAYEVLSDGNKRRAYDAHG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_XANOP (Chaperone protein dnaJ OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            + + +YY+VLGV+  AS+ E+KKAY   A K HPD+NP D  A   F+   EAY+VLSD  +R+AYDA+G
Sbjct:    1 MSKRDYYEVLGVARGASDEELKKAYRRCAMKHHPDRNPGDAAAEAAFKECKEAYEVLSDGNKRRAYDAHG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_XANOM (Chaperone protein dnaJ OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            + + +YY+VLGV+  AS+ E+KKAY   A K HPD+NP D  A   F+   EAY+VLSD  +R+AYDA+G
Sbjct:    1 MSKRDYYEVLGVARGASDEELKKAYRRCAMKHHPDRNPGDAAAEAAFKECKEAYEVLSDGNKRRAYDAHG 70          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_XANC5 (Chaperone protein dnaJ OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYG 389
            + + +YY+VLGV+  AS+ E+KKAY   A K HPD+NP D  A   F+   EAY+VLSD  +R+AYDA+G
Sbjct:    1 MSKRDYYEVLGVARGASDEELKKAYRRCAMKHHPDRNPGDAAAEAAFKECKEAYEVLSDGNKRRAYDAHG 70          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNJB6_HUMAN1.648e-1252.78DnaJ homolog subfamily B member 6 OS=Homo sapiens ... [more]
DNJB6_CHICK1.648e-1253.52DnaJ homolog subfamily B member 6 OS=Gallus gallus... [more]
DNJB6_BOVIN1.648e-1252.78DnaJ homolog subfamily B member 6 OS=Bos taurus GN... [more]
DNJ39_ARATH1.648e-1246.48Chaperone protein dnaJ 39 OS=Arabidopsis thaliana ... [more]
DNAJ_XYLFM1.648e-1241.67Chaperone protein dnaJ OS=Xylella fastidiosa (stra... [more]
DNAJ_XYLFA1.648e-1241.67Chaperone protein dnaJ OS=Xylella fastidiosa GN=dn... [more]
DNAJ_XANOR1.648e-1251.43Chaperone protein dnaJ OS=Xanthomonas oryzae pv. o... [more]
DNAJ_XANOP1.648e-1251.43Chaperone protein dnaJ OS=Xanthomonas oryzae pv. o... [more]
DNAJ_XANOM1.648e-1251.43Chaperone protein dnaJ OS=Xanthomonas oryzae pv. o... [more]
DNAJ_XANC51.648e-1251.43Chaperone protein dnaJ OS=Xanthomonas campestris p... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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