FC920412

Overview
NameFC920412
Unique NameFC920412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_BUCAT (Chaperone protein dnaJ OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI------STEAIIDPAAIFAMLFGSELFEDYIG 479
            +YY +LG+  +A E EIKKAY   A K HPD+N  D  A   F+ + EAY++L +  +R AYD YG +        ST +    +A F+ +FG ++F D  G
Sbjct:    5 DYYQILGIPKSAEEREIKKAYKKLAMKYHPDRNQGDKTAEGKFKEIKEAYEILINEEKRSAYDQYGHAAFENGQSNSTYSTFTNSADFSDIFG-DVFGDIFG 105          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_BUCAI (Chaperone protein dnaJ OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=dnaJ PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI------STEAIIDPAAIFAMLFGSELFEDYIG 479
            +YY +LG+  +A E EIKKAY   A K HPD+N  D  A   F+ + EAY++L +  +R AYD YG +        ST +    +A F+ +FG ++F D  G
Sbjct:    5 DYYQILGIPKSAEEREIKKAYKKLAMKYHPDRNQGDKTAEGKFKEIKEAYEILINEEKRSAYDQYGHAAFENGQSNSTYSTFTNSADFSDIFG-DVFGDIFG 105          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_BUCA5 (Chaperone protein dnaJ OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGI------STEAIIDPAAIFAMLFGSELFEDYIG 479
            +YY +LG+  +A E EIKKAY   A K HPD+N  D  A   F+ + EAY++L +  +R AYD YG +        ST +    +A F+ +FG ++F D  G
Sbjct:    5 DYYQILGIPKSAEEREIKKAYKKLAMKYHPDRNQGDKTAEGKFKEIKEAYEILINEEKRSAYDQYGHAAFENGQSNSTYSTFTNSADFSDIFG-DVFGDIFG 105          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DJB10_MOUSE (DnaJ homolog subfamily B member 10 OS=Mus musculus GN=Dnajb10 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 45/116 (38.79%), Postives = 61/116 (52.59%), Query Frame = 3
Query:  195 YYDVLGVSPTASEAEIKKAYYIKARKVHPDKNP-NDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS------------------TEAIIDPAAIFAMLFG-----SELFED 470
            YY++L V  +AS  +IKKAY  KA + HPDKNP N   A + F+ + EAY+VLSD  +R+ YD YG+ G++                  T     P  +F   FG     SELF+D
Sbjct:    4 YYEILDVPRSASPDDIKKAYRKKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTGAGSGPSRSETGGAGPGFTFTFRSPEEVFREFFGSGDPFSELFDD 119          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_WOLTR (Chaperone protein dnaJ OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 42/105 (40.00%), Postives = 57/105 (54.29%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGISTEAIIDPAAIFAMLFG-----SELFEDYIG 479
            + + +YY +LGV   AS  EIKKAY   A K HPD+NP +  A + F+ +  AY+VLSD  +R  YD YG  G S          F+  FG     S++F D+ G
Sbjct:    1 MSKKDYYKLLGVDRNASTDEIKKAYKKLALKYHPDRNPGNKEAEEKFKEITAAYEVLSDSEKRAGYDRYGHEGAS------GGFDFSQGFGSAGDFSDIFNDFFG 99          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_PECCP (Chaperone protein dnaJ OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 43/103 (41.75%), Postives = 57/103 (55.34%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKS-------GISTEAIIDPAAIFAMLFGSELFEDYIG 479
            +YY+ LGV+ +A E EIKKAY   A K HPD+NP D  A   F+ + EAY++L D  +R AYD YG +       G S        A F  +FG ++F D  G
Sbjct:    5 DYYESLGVAKSADEREIKKAYKRLAMKYHPDRNPGDSEAEAKFKEIKEAYEILIDSQKRAAYDQYGHAAFEQGGMGGSGGGFGGGGADFGDIFG-DVFGDIFG 106          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_DESVM (Chaperone protein dnaJ OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  180 VKETEYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 404
            + + +YY+VLGV+  ASE EIK+ Y   A + HPD+NP++P A Q F+   EAY VL D  +R  YD +G +G++
Sbjct:    1 MSQRDYYEVLGVARDASEDEIKRQYRKLALQYHPDRNPDNPEAEQMFKEAAEAYDVLRDADKRARYDRFGHAGLN 75          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_DESHY (Chaperone protein dnaJ OS=Desulfitobacterium hafniense (strain Y51) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 37/68 (54.41%), Postives = 44/68 (64.71%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKS 395
            +YY+VLGVS +A E EIKKAY   AR+ HPD NP D  A + F+   EAY VLSD  +R  YD  G S
Sbjct:    4 DYYEVLGVSKSADEQEIKKAYRKLARQYHPDVNPGDKDAEEKFKEATEAYDVLSDTEKRARYDQMGHS 71          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_DESHD (Chaperone protein dnaJ OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 37/68 (54.41%), Postives = 44/68 (64.71%), Query Frame = 3
Query:  192 EYYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKS 395
            +YY+VLGVS +A E EIKKAY   AR+ HPD NP D  A + F+   EAY VLSD  +R  YD  G S
Sbjct:    4 DYYEVLGVSKSADEQEIKKAYRKLARQYHPDVNPGDKDAEEKFKEATEAYDVLSDTEKRARYDQMGHS 71          
BLAST of FC920412 vs. ExPASy Swiss-Prot
Match: DNAJ_DESAD (Chaperone protein dnaJ OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 3
Query:  195 YYDVLGVSPTASEAEIKKAYYIKARKVHPDKNPNDPLAAQNFQVLGEAYQVLSDPAQRQAYDAYGKSGIS 404
            YY+VL VS  A E EIK+AY  KA + HPD+NP +  A + F+   EAY VL DP +R  YD +G  G++
Sbjct:    6 YYEVLEVSREAQEGEIKRAYRKKAMEFHPDRNPGNAEAEEKFKEAAEAYDVLRDPEKRSRYDRFGHQGMN 75          
The following BLAST results are available for this feature:
BLAST of FC920412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_BUCAT2.152e-1239.22Chaperone protein dnaJ OS=Buchnera aphidicola subs... [more]
DNAJ_BUCAI2.152e-1239.22Chaperone protein dnaJ OS=Buchnera aphidicola subs... [more]
DNAJ_BUCA52.152e-1239.22Chaperone protein dnaJ OS=Buchnera aphidicola subs... [more]
DJB10_MOUSE2.152e-1238.79DnaJ homolog subfamily B member 10 OS=Mus musculus... [more]
DNAJ_WOLTR2.811e-1240.00Chaperone protein dnaJ OS=Wolbachia sp. subsp. Bru... [more]
DNAJ_PECCP2.811e-1241.75Chaperone protein dnaJ OS=Pectobacterium carotovor... [more]
DNAJ_DESVM2.811e-1245.33Chaperone protein dnaJ OS=Desulfovibrio vulgaris (... [more]
DNAJ_DESHY2.811e-1254.41Chaperone protein dnaJ OS=Desulfitobacterium hafni... [more]
DNAJ_DESHD2.811e-1254.41Chaperone protein dnaJ OS=Desulfitobacterium hafni... [more]
DNAJ_DESAD2.811e-1248.57Chaperone protein dnaJ OS=Desulfovibrio salexigens... [more]

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Properties
Property NameValue
Genbank descriptionC32008A07EF RVDevelop1 Citrus clementina cDNA clone C32008A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920412 ID=FC920412; Name=FC920412; organism=Citrus clementina; type=EST; length=731bp
GGAAGGAATCAGAGGTCAGCGCGCGGGAGAGTAAATCTGCTTTCATCCTT
TTTGTATGCTCTATTCTATCTGTTATCTTTCTGAATCTGCTTCGTAACTA
ATCAGTTTGATTTAGATTGTAAATCGAAGAAAGCTAAGCTAGACTAGTAG
TAATTTTCGGGTCTTGAGAATCAGTGATGGTTAAGGAGACGGAATATTAC
GACGTCCTAGGCGTCAGCCCAACGGCTTCGGAGGCCGAGATCAAGAAAGC
TTACTACATCAAGGCACGTAAGGTTCACCCTGATAAAAACCCAAATGATC
CTCTTGCTGCTCAAAATTTTCAGGTTTTGGGAGAGGCTTACCAGGTATTG
AGTGATCCAGCCCAACGGCAAGCATATGATGCTTATGGGAAATCAGGAAT
CTCAACTGAAGCAATTATTGATCCTGCAGCAATCTTCGCGATGCTTTTTG
GAAGTGAGCTTTTTGAGGATTATATAGGTCAGCTTGCCATGGCTTCAGTG
GCTTCTCTAGACATTTTCACTGAAGGGGAAGAGTTTGATGCTAAAAAGTT
GCAAGACAAAATGAAGGTTGTTCAGAAGGAAAGGGAGGAAAAACTTGCAG
ATATACTAAGAGGTCGACTCAACCAATATGTACAAGGGAAACAAGAGGAT
TTCATTAATTATGCTGAAGCTGAAGTTTCAAGGCTGTCTAATGCTGCGTA
TGGTGGTGATATGNTGAATACAATTGGCTAT
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