FC920427

Overview
NameFC920427
Unique NameFC920427
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC13_ARATH (Laccase-13 OS=Arabidopsis thaliana GN=LAC13 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.089e-17
Identity = 53/153 (34.64%), Postives = 76/153 (49.67%), Query Frame = 3
Query:  216 ILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGG--INXXXXXXXXXXXXXXDGDFTLLIGDWFKTN-HKILRQTLDSGKSLPFPDGVLINGQ 662
            I +NGQFPGP L+V   D++++  INK      L W+GI+Q +N W DG    T CPI P  +YTY+F  +DQ G+ ++   +   RA   YG   I                 + TLL+G+W+  N   +L     +G +    D   INGQ
Sbjct:   45 ITVNGQFPGPTLEVRNGDSLVITAINKARYNISLHWHGIRQMRNPWADGPEYITQCPIQPGGSYTYRFTMEDQEGTLWWHAHSRWLRAT-VYGALIIRPPLSSPHYPFPVIPKREITLLLGEWWDRNPMDVLNLAQFTGAAPNISDAFTINGQ 196          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC19_ORYSI (Putative laccase-19 OS=Oryza sativa subsp. indica GN=LAC19 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.953e-17
Identity = 48/169 (28.40%), Postives = 83/169 (49.11%), Query Frame = 3
Query:  159 YTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGV-LGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQ 662
            +T+ V     + L    ++ ++NGQFPGP +DV+  D ++++VINKL     + W+G++Q ++ W DG    T CPIPP + +TY+F    Q+G+ ++       RA     G                  D  ++IG+W++ +   L + +  G     P    ING+
Sbjct:   33 HTFVVHEMNATHLCNTTKIYVVNGQFPGPTVDVMEGDTVVVHVINKLPFGLTIHWHGVRQMRSCWADGAGFVTECPIPPGNEHTYRFNVTGQVGTLWWHAHVTCLRAT--INGAFIVRPRDGKYPFPTPAKDVPIIIGEWWELDLIELDRRMMDGNFDDNPLSATINGK 199          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC20_ORYSJ (Laccase-20 OS=Oryza sativa subsp. japonica GN=LAC20 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.039e-16
Identity = 46/169 (27.22%), Postives = 82/169 (48.52%), Query Frame = 3
Query:  159 YTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGV-LGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQ 662
            +T+ V    ++ L    ++ ++NGQ PGP +DV   D ++++V+NK+     + W+G++Q ++ W DG    T CPIPP S  TY+F   DQ+G+ ++       R+     G                  D  ++IG+W++ +   L + +  G     P    ING+
Sbjct:   28 HTFVVHEMNVTHLCNTTKIFVVNGQLPGPTVDVTEGDTVVIHVVNKIPHGLTIHWHGVRQLRSCWADGAGFITECPIPPGSERTYRFNVTDQVGTLWWHAHVTCLRST--INGAFIIRPRDGKYPFPTPVKDVPIIIGEWWELDLVELDRRMRDGNFDDNPLSATINGK 194          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC19_ORYSJ (Laccase-19 OS=Oryza sativa subsp. japonica GN=LAC19 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.039e-16
Identity = 48/169 (28.40%), Postives = 82/169 (48.52%), Query Frame = 3
Query:  159 YTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGV-LGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQ 662
            +T+ V     + L    ++ ++NGQFPGP +DV   D ++++VINKL     + W+G++Q ++ W DG    T CPIPP + +TY+F    Q+G+ ++       RA     G                  D  ++IG+W++ +   L + +  G     P    ING+
Sbjct:   33 HTFVVHEMNATHLCNTTKIYVVNGQFPGPTVDVTEGDTVVVHVINKLPFGLTIHWHGVRQMRSCWADGAGFVTECPIPPGNEHTYRFNVTGQVGTLWWHAHVTCLRAT--INGAFIVRPRDGKYPFPTPAKDVPIIIGEWWELDLIELDRRMMDGNFDDNPLSATINGK 199          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC6_ARATH (Laccase-6 OS=Arabidopsis thaliana GN=LAC6 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.357e-16
Identity = 53/185 (28.65%), Postives = 87/185 (47.03%), Query Frame = 3
Query:  153 RFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGD-WFKTNHKILRQTLDSGKSLPFPDGVLINGQGHTTFTVIRKKLH 701
            RFY + V +  L+ L    E++ +N +FPGP +    +D I++ VIN       + W+GIKQ+++ W DG    T CPI    ++TY F+   Q G++ +       RA   YG +                 + T+L+G+ W K   ++ +  L+SG   P  D   INGQ    +    K ++
Sbjct:   32 RFYQFKVQTIRLTRLCQTNEIVTVNKKFPGPAISAQEDDRIVIKVINMTPYNTTIHWHGIKQKRSCWYDGPSYITQCPIQSGQSFTYNFKVAQQKGTFLWHAHFSWLRAT-VYGPLIVYPKASVPYPFKKPFNEHTILLGEYWLKNVVELEQHVLESGGPPPPADAFTINGQPGPNYNCSSKDVY 215          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC20_ORYSI (Laccase-20 OS=Oryza sativa subsp. indica GN=LAC20 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.357e-16
Identity = 46/169 (27.22%), Postives = 82/169 (48.52%), Query Frame = 3
Query:  159 YTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGV-LGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNHKILRQTLDSGKSLPFPDGVLINGQ 662
            +T+ V    ++ L    ++ ++NGQ PGP +DV   D ++++V+NK+     + W+G++Q ++ W DG    T CPIPP S  TY+F   DQ+G+ ++       R+     G                  D  ++IG+W++ +   L + +  G     P    ING+
Sbjct:   28 HTFVVHEMNVTHLCNTTKIFVVNGQLPGPTVDVTEGDTVVVHVVNKIPHGLTIHWHGVRQLRSCWADGAGFITECPIPPGSERTYRFNVTDQVGTLWWHAHVTCLRST--INGAFIIRPRDGKYPFPTPVKDVPIIIGEWWELDLVELDRRMRDGNFDDNPLSATINGK 194          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: ASO_CUCSA (L-ascorbate oxidase OS=Cucumis sativus PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.314e-16
Identity = 58/187 (31.02%), Postives = 87/187 (46.52%), Query Frame = 3
Query:  153 RFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKL-DQPFLLTWNGIKQRKNSWQDGVLG-TNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNHKILRQTLDSGKSLPF-----PDGVLINGQGHTTFTVIRK 692
            + Y W V     SP  V   V+ ING+FPGP +     D +++ + NKL  +  ++ W+GI QR   W DG    + C I P   +TY+F   D+ G+YFY     M R+AG YG +               D +  LL+ DW+   H+ + +      S P      P  +LING+G    ++  K
Sbjct:   39 KHYKWDVEYMFWSPDCVENIVMGINGEFPGPTIRANAGDIVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQCAINPGETFTYRF-VVDKAGTYFYHGHLGMQRSAGLYGSL-IVDPPEGRSEPFHYDEEINLLLSDWW---HQSVHKQEVGLSSKPMRWIGEPQSILINGKGQFDCSIAAK 220          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC10_ARATH (Laccase-10 OS=Arabidopsis thaliana GN=LAC10 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 47/171 (27.49%), Postives = 86/171 (50.29%), Query Frame = 3
Query:  153 RFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTN-HKILRQTLDSGKSLPFPDGVLING 659
            R YT+ V +  ++ +   ++++ +NG+FPGP +    +D I++NV+N +     + W+GI+Q +  W DG    T CPI P  +Y Y F    Q G+ ++    L  RA   +G I                 +  +++G+W+K++   ++ + L SG +    D  +ING
Sbjct:   25 RKYTFNVVTKQVTRICSTKQIVTVNGKFPGPTIYANEDDTILVNVVNNVKYNVSIHWHGIRQLRTGWADGPAYITQCPIKPGHSYVYNFTVTGQRGTLWWHAHVLWLRAT-VHGAIVILPKLGLPYPFPKPHREEVIILGEWWKSDTETVVNEALKSGLAPNVSDAHVING 194          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: ASO_CUCMA (L-ascorbate oxidase OS=Cucurbita maxima GN=AAO PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.947e-16
Identity = 58/187 (31.02%), Postives = 86/187 (45.99%), Query Frame = 3
Query:  153 RFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKL-DQPFLLTWNGIKQRKNSWQDGVLG-TNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNHKILRQTLDSGKSLPF-----PDGVLINGQGHTTFTVIRK 692
            R Y W V     +P      V+ INGQFPGP +     D +++ +INKL  +  ++ W+GI QR   W DG    + C I P   + Y F T D  G++FY     M R+AG YG +               DG+  LL+ DW+   H+ + +      S P      P  +L+NG+G    ++  K
Sbjct:   34 RHYKWEVEYMFWAPDCNENIVMGINGQFPGPTIRANAGDTVVVELINKLHTEGVVIHWHGILQRGTPWADGTASISQCAINPGETFFYNF-TVDNPGTFFYHGHLGMQRSAGLYGSL-IVDPPQGKKEPFHYDGEINLLLSDWW---HQSIHKQEVGLSSKPIRWIGEPQTILLNGRGQFDCSIAAK 215          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC5_ARATH (Laccase-5 OS=Arabidopsis thaliana GN=LAC5 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 48/151 (31.79%), Postives = 76/151 (50.33%), Query Frame = 3
Query:  216 ILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNH-KILRQTLDSGKSLPFPDGVLINGQ 662
            I +NG FPGP L V   D +++ VIN+      + W+G++Q +  W DG    T CPI P S+YTY+F  + Q G+ ++   +   RA   YG +                 +  LL+G+W+  N   +LR+++ +G +    D   INGQ
Sbjct:   50 ITVNGMFPGPMLVVNNGDTLVVKVINRARYNITIHWHGVRQMRTGWADGPEFVTQCPIRPGSSYTYRFTIQGQEGTLWWHAHSSWLRAT-VYGSLLVFPPAGSSYPFTKPHRNVPLLLGEWWDANPVDVLRESIRTGGAPNNSDAYTINGQ 199          
The following BLAST results are available for this feature:
BLAST of FC920427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
LAC13_ARATH6.089e-1734.64Laccase-13 OS=Arabidopsis thaliana GN=LAC13 PE=2 S... [more]
LAC19_ORYSI7.953e-1728.40Putative laccase-19 OS=Oryza sativa subsp. indica ... [more]
LAC20_ORYSJ1.039e-1627.22Laccase-20 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC19_ORYSJ1.039e-1628.40Laccase-19 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC6_ARATH1.357e-1628.65Laccase-6 OS=Arabidopsis thaliana GN=LAC6 PE=2 SV=... [more]
LAC20_ORYSI1.357e-1627.22Laccase-20 OS=Oryza sativa subsp. indica GN=LAC20 ... [more]
ASO_CUCSA2.314e-1631.02L-ascorbate oxidase OS=Cucumis sativus PE=1 SV=1[more]
LAC10_ARATH3.022e-1627.49Laccase-10 OS=Arabidopsis thaliana GN=LAC10 PE=2 S... [more]
ASO_CUCMA3.947e-1631.02L-ascorbate oxidase OS=Cucurbita maxima GN=AAO PE=... [more]
LAC5_ARATH5.155e-1631.79Laccase-5 OS=Arabidopsis thaliana GN=LAC5 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC32008C04EF RVDevelop1 Citrus clementina cDNA clone C32008C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920427 ID=FC920427; Name=FC920427; organism=Citrus clementina; type=EST; length=705bp
GGCGGCCAGAAGCTTAGATTAGATTCCATTAGACTCTCAACTCGACTCGA
CTCAACTTTGAAGCAATGGCGAGAACACTCTTGCTGCCGCTACTGGTCTG
TGTAGTTTTGGCTGCCTTGAGTGTTGCTTTGGTGAAGGCAGACGACCCGT
ATAGATTTTACACTTGGACTGTCACTTCTGGCACTTTGTCTCCTCTTGGC
GTTCCCCAAGAGGTTATTCTTATTAATGGTCAGTTTCCCGGTCCTAGATT
GGATGTGGTAACCAATGATAATATCATACTCAATGTCATTAACAAGCTAG
ATCAACCTTTTCTCCTTACTTGGAATGGAATTAAACAAAGGAAGAATTCA
TGGCAAGATGGAGTCCTTGGAACCAATTGCCCCATTCCTCCAAACTCCAA
CTACACTTACAAATTTCAAACCAAGGATCAGATTGGGTCCTACTTTTACT
TCCCATCAACTCTGATGCACCGAGCTGCTGGAGGATATGGAGGAATCAAT
ATCTATCAGAGACCTCGAATACCGATCCCTTACCCAATCCAGGATGGAGA
TTTCACTTTATTAATTGGCGACTGGTTCAAGACAAACCATAAGATATTAC
GACAGACTTTGGACTCAGGGAAGTCTCTTCCATTTCCAGATGGAGTCCTT
ATCAATGGTCAGGGTCATACCACCTTCACGGTGATCAGGAAAAAACTACA
TGTTT
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