FC920427

Overview
NameFC920427
Unique NameFC920427
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: ASO_CUCPM (L-ascorbate oxidase OS=Cucurbita pepo var. melopepo PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.793e-16
Identity = 57/187 (30.48%), Postives = 86/187 (45.99%), Query Frame = 3
Query:  153 RFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKL-DQPFLLTWNGIKQRKNSWQDGVLG-TNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNHKILRQTLDSGKSLPF-----PDGVLINGQGHTTFTVIRK 692
            R Y W V     +P      V+ INGQFPGP +     D++++ + NKL  +  ++ W+GI QR   W DG    + C I P   + Y F T D  G++FY     M R+AG YG +               DG+  LL+ DW+   H+ + +      S P      P  +L+NG+G    ++  K
Sbjct:    4 RHYKWEVEYMFWAPNCNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQCAINPGETFFYNF-TVDNPGTFFYHGHLGMQRSAGLYGSL-IVDPPQGKKEPFHYDGEINLLLSDWW---HQSIHKQEVGLSSKPIRWIGEPQTILLNGRGQFDCSIAAK 185          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC7_ORYSJ (Laccase-7 OS=Oryza sativa subsp. japonica GN=LAC7 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.148e-15
Identity = 52/169 (30.77%), Postives = 79/169 (46.75%), Query Frame = 3
Query:  159 YTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNHKILRQTLDSGKSLP-FPDGVLING 659
            YT+TV S  +S L    ++I +NG  PGP ++V   D + + VIN       + W+GI Q    W DG  + T CPI PNS+YTY+F    Q G+ ++   +   RA   YG +               D +  +++G+W+  N   +     S   LP   D   +NG
Sbjct:   33 YTFTVESMRVSRLCNSTDIIAVNGLLPGPMIEVNEGDAVAVEVINGSPYNLTIHWHGILQLLTPWADGPSMVTQCPIQPNSSYTYRFNVTGQEGTLWWHAHSSFLRAT-VYGALIIRPRNGSAYPFPAPDQEVPIVLGEWWSRNVVDIESDAVSSGQLPRESDAFTVNG 200          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC25_ORYSJ (Laccase-25 OS=Oryza sativa subsp. japonica GN=LAC25 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.959e-15
Identity = 47/171 (27.49%), Postives = 80/171 (46.78%), Query Frame = 3
Query:  159 YTWTVTSGTLSPLGVPQEVIL-INGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFK-TNHKILRQTLDSGKSLPFPDGVLINGQ 662
            +T+ V + ++S L  P  +I  +NGQ PGP +     D ++++++N       L W+G+ QR   W DG  + T CP+ P  NYTY+F    Q G+ ++      HRA      +               D +  +++G+W+  T + + R    +G   P  D   ING+
Sbjct:   27 HTFNVGNFSISQLCQPPLIITAVNGQLPGPTIYAREGDTVVVHLVNTSPYSMTLHWHGVLQRGTPWADGPAMVTQCPVQPGGNYTYRFNVDGQEGTLWWHAHVSFHRATVYGALVIRPRGGAKAYPFPKPDKEHVVILGEWWNATVYDMERMAFLTGIPAPHADAYTINGK 197          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC3_ORYSJ (Laccase-3 OS=Oryza sativa subsp. japonica GN=LAC3 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.558e-15
Identity = 45/152 (29.61%), Postives = 75/152 (49.34%), Query Frame = 3
Query:  213 VILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNH-KILRQTLDSGKSLPFPDGVLINGQ 662
            VI +NGQ PGP L+V   D +++NV+N       + W+GI+Q +  W DG    T CPI P  +Y Y+F  + Q G+ ++   +   RA   YG +                 +  L++G+W+  +  +++R+   +G +    D   INGQ
Sbjct:   47 VITVNGQLPGPTLEVREGDTVVINVVNHAQYNVTIHWHGIRQFRTGWADGPEFVTQCPIKPGGSYKYRFTIEGQEGTLWWHAHSSWLRAT-VYGALIIRPRENKTYPFEKPAREVPLILGEWWDADPIQVIREAQRTGAAPNISDAYTINGQ 197          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC4_ARATH (Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.364e-15
Identity = 45/171 (26.32%), Postives = 82/171 (47.95%), Query Frame = 3
Query:  153 RFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTN-HKILRQTLDSGKSLPFPDGVLING 659
            R Y + V    ++ L   +  + +NG++PGP +    +D +++ V+N +     + W+G++Q +  W DG    T CPI P   YTY +    Q G+ ++    L  RA   YG +               D +  +++G+W+K++   I+ + L SG +    D  +ING
Sbjct:   27 RHYKFNVVMKNVTRLCSSKPTVTVNGRYPGPTIYAREDDTLLIKVVNHVKYNVSIHWHGVRQVRTGWADGPAYITQCPIQPGQVYTYNYTLTGQRGTLWWHAHILWLRAT-VYGALVILPKRGVPYPFPKPDNEKVIVLGEWWKSDTENIINEALKSGLAPNVSDSHMING 196          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC10_ORYSJ (Laccase-10 OS=Oryza sativa subsp. japonica GN=LAC10 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.364e-15
Identity = 46/171 (26.90%), Postives = 76/171 (44.44%), Query Frame = 3
Query:  153 RFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTN-HKILRQTLDSGKSLPFPDGVLING 659
            R+YT+ V    ++ L   + +  +NG+FPGP++     D +++ V+N +     + W+G++Q +  W DG    T CPI    +Y Y F    Q G+ F+       R+   YG I                 D  ++ G+WF  +   I+ Q L +G      D   ING
Sbjct:   32 RYYTFNVKLQNVTRLCNTRAIPTVNGKFPGPKIVTREGDRVVVKVVNNIKDNITIHWHGVRQMRTGWSDGPAYVTQCPIQTGQSYVYNFTINGQRGTLFWHAHVSWLRST-LYGPIIILPKAGLPLPFTEPHKDVPIIFGEWFNADPEAIVAQALQTGGGPNVSDAYTING 201          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC14_ORYSJ (Laccase-14 OS=Oryza sativa subsp. japonica GN=LAC14 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 50/175 (28.57%), Postives = 84/175 (48.00%), Query Frame = 3
Query:  159 YTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPP----NSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNHKIL---RQTLDSGKSLPFPDGVLING 659
            +T+ V + T+  LG  Q +  +NGQFPGP+++    D +++ V+N       + W+G+ QR ++W DG  + T CPI P     S+YTY+F    Q G+ ++       RA   YG +                 + TLL+G+W+  +  ++   RQ   +G        + ING
Sbjct:   35 HTFHVGNLTVERLGQRQVITAVNGQFPGPKVEARNGDTLLVRVVNNSPYNITIHWHGVLQRLSAWADGPAMVTQCPILPGSGAGSSYTYRFNVTGQEGTLWWHAHVSFLRAT-VYGALLIRPRPGVPYPFPAPHAEHTLLLGEWWNASATLVDVERQAFLTGGQPANSVALTING 208          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC12_ARATH (Laccase-12 OS=Arabidopsis thaliana GN=LAC12 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 45/154 (29.22%), Postives = 72/154 (46.75%), Query Frame = 3
Query:  207 QEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNH-KILRQTLDSGKSLPFPDGVLINGQ 662
            +  I +NG FPGP L+V   D + + V N+      + W+G++Q +  W DG    T CPI P  +YTY+F  + Q G+ ++   +   RA   YG +               D    L++G+W+  N   ++ Q   +G +    D   INGQ
Sbjct:   45 RNAITVNGMFPGPTLEVNNGDTLEVKVHNRARYNITIHWHGVRQIRTGWADGPEFVTQCPIRPGKSYTYRFTIQGQEGTLWWHAHSSWLRAT-VYGALIIHPTPGSSFPFPKPDRQTALMLGEWWNANPVDVINQATRTGAAPNISDAYTINGQ 197          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC1_THACU (Laccase-1 OS=Thanatephorus cucumeris GN=LCC1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 54/177 (30.51%), Postives = 81/177 (45.76%), Query Frame = 3
Query:  159 YTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFL-----LTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFT-LLIGDWFKTNHKILRQTLDSGK-SLPFPDGVLINGQG 665
            Y   ++ G ++P GV +   L+NG +PGP +     D + + V NKL  P +     + W+G+ Q +N+  DG    T CPI P  +YTY     DQ G+Y+Y          G  G +               D + T L+IGDW+   H+  +  L SG  +   P    ING+G
Sbjct:   24 YGLKISDGEIAPDGVKRNATLVNGGYPGPLIFANKGDTLKVKVQNKLTNPEMYRTTSIHWHGLLQHRNADDDGPSFVTQCPIVPRESYTYTIPLDDQTGTYWYHSHLSSQYVDGLRGPLVIYDPKDPHRRLYDVDDEKTVLIIGDWY---HESSKAILASGNITRQRPVSATINGKG 197          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC11_ORYSJ (Putative laccase-11 OS=Oryza sativa subsp. japonica GN=LAC11 PE=5 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 48/167 (28.74%), Postives = 77/167 (46.11%), Query Frame = 3
Query:  183 TLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTN-HKILRQTLDSGKSLPFPDGVLINGQGHTTF 677
            T++ L V + V  +NGQFPGP+L V   D +++ V N ++      W+GI+Q ++ W DG    T CPI    +Y Y+F    Q G+ ++       RA   YG +                 +  LL+G+WF  +   +++Q L +G      D    NG    T+
Sbjct:    3 TVTRLCVTKSVPTVNGQFPGPKLVVREGDTLVIRVTNNINNNVTFHWHGIRQVRSGWADGPAYITQCPIRSGGSYVYRFTVTGQRGTLWWHAHFSWLRAT-LYGPLVILPPRGVAYPFPKPHREVPLLLGEWFNADPEAVIKQALQTGGGPNVSDAYTFNGLPGPTY 168          
The following BLAST results are available for this feature:
BLAST of FC920427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
ASO_CUCPM8.793e-1630.48L-ascorbate oxidase OS=Cucurbita pepo var. melopep... [more]
LAC7_ORYSJ1.148e-1530.77Laccase-7 OS=Oryza sativa subsp. japonica GN=LAC7 ... [more]
LAC25_ORYSJ1.959e-1527.49Laccase-25 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC3_ORYSJ2.558e-1529.61Laccase-3 OS=Oryza sativa subsp. japonica GN=LAC3 ... [more]
LAC4_ARATH4.364e-1526.32Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV... [more]
LAC10_ORYSJ4.364e-1526.90Laccase-10 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC14_ORYSJ5.699e-1528.57Laccase-14 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC12_ARATH1.270e-1429.22Laccase-12 OS=Arabidopsis thaliana GN=LAC12 PE=2 S... [more]
LAC1_THACU2.166e-1430.51Laccase-1 OS=Thanatephorus cucumeris GN=LCC1 PE=1 ... [more]
LAC11_ORYSJ2.166e-1428.74Putative laccase-11 OS=Oryza sativa subsp. japonic... [more]

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Properties
Property NameValue
Genbank descriptionC32008C04EF RVDevelop1 Citrus clementina cDNA clone C32008C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920427 ID=FC920427; Name=FC920427; organism=Citrus clementina; type=EST; length=705bp
GGCGGCCAGAAGCTTAGATTAGATTCCATTAGACTCTCAACTCGACTCGA
CTCAACTTTGAAGCAATGGCGAGAACACTCTTGCTGCCGCTACTGGTCTG
TGTAGTTTTGGCTGCCTTGAGTGTTGCTTTGGTGAAGGCAGACGACCCGT
ATAGATTTTACACTTGGACTGTCACTTCTGGCACTTTGTCTCCTCTTGGC
GTTCCCCAAGAGGTTATTCTTATTAATGGTCAGTTTCCCGGTCCTAGATT
GGATGTGGTAACCAATGATAATATCATACTCAATGTCATTAACAAGCTAG
ATCAACCTTTTCTCCTTACTTGGAATGGAATTAAACAAAGGAAGAATTCA
TGGCAAGATGGAGTCCTTGGAACCAATTGCCCCATTCCTCCAAACTCCAA
CTACACTTACAAATTTCAAACCAAGGATCAGATTGGGTCCTACTTTTACT
TCCCATCAACTCTGATGCACCGAGCTGCTGGAGGATATGGAGGAATCAAT
ATCTATCAGAGACCTCGAATACCGATCCCTTACCCAATCCAGGATGGAGA
TTTCACTTTATTAATTGGCGACTGGTTCAAGACAAACCATAAGATATTAC
GACAGACTTTGGACTCAGGGAAGTCTCTTCCATTTCCAGATGGAGTCCTT
ATCAATGGTCAGGGTCATACCACCTTCACGGTGATCAGGAAAAAACTACA
TGTTT
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