FC920427

Overview
NameFC920427
Unique NameFC920427
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC15_ARATH (Laccase-15 OS=Arabidopsis thaliana GN=TT10 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 45/169 (26.63%), Postives = 83/169 (49.11%), Query Frame = 3
Query:  159 YTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTN-HKILRQTLDSGKSLPFPDGVLING 659
            YT+TV     + L   + ++ +N QFPGP + V   D I +NV N+  +   + W+G++Q +N W DG    T CPI P S++ YK     +  + ++   +   RA   +G I               D +  +++G+W+K +  +++ + + +G +    D + ING
Sbjct:   24 YTFTVREVPYTKLCSTKAILTVNSQFPGPIIKVHKGDTIYVNVQNRASENITMHWHGVEQPRNPWSDGPEYITQCPIRPGSDFLYKVIFSIEDTTVWWHAHSSWTRAT-VHGLIFVYPRPPQILPFPKADHEVPIILGEWWKRDVREVVEEFVRTGGAPNVSDALTING 191          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC2_ARATH (Laccase-2 OS=Arabidopsis thaliana GN=LAC2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.099e-13
Identity = 44/171 (25.73%), Postives = 75/171 (43.86%), Query Frame = 3
Query:  153 RFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTN-HKILRQTLDSGKSLPFPDGVLING 659
            R Y + +    ++ L   + ++ +NG+FPGPR+     DN+ + V+N +     + W+GI+Q ++ W DG    T CPI    +Y Y F    Q G+ ++       RA   YG +                    +L G+WF  +   +++Q L +G      D    NG
Sbjct:   30 RHYQFDIQLKNITRLCKTKTIVTVNGKFPGPRVTAREGDNLQIKVVNHVSNNISIHWHGIRQLRSGWADGPSYVTQCPIRMGQSYVYNFTVTGQRGTLWWHAHIQWMRAT-VYGPLIILPKLHQPYPFPKPYKQVPILFGEWFNADPQAVVQQALQTGAGPNASDAHTFNG 199          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC9_ORYSJ (Putative laccase-9 OS=Oryza sativa subsp. japonica GN=LAC9 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.188e-12
Identity = 42/160 (26.25%), Postives = 76/160 (47.50%), Query Frame = 3
Query:  153 RFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNHKILRQTLDSGKSL 629
            R Y + +T    + L   + ++ +NGQFPGP +     D +I+NV N  ++   + W+G+ Q +N W DG    T CPI P  N+TY+    ++ G+ ++   +   RA   +G I               D +  +++G+W+  +   +   LD  + L
Sbjct:   31 RHYDFFITETNYTRLCHEKSILTVNGQFPGPTIYARKGDLVIVNVHNNGNKNITIHWHGVDQPRNPWSDGPEFITQCPIRPGGNFTYQVILSEEEGTLWWHAHSDFDRAT-VHGAIVIHPKRGTTFPFKKPDKEIPVILGEWWNDD---IEHVLDKAQLL 186          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC4_TRAVE (Laccase-4 OS=Trametes versicolor GN=LCC4 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.188e-12
Identity = 49/174 (28.16%), Postives = 76/174 (43.68%), Query Frame = 3
Query:  168 TVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLT-----WNGIKQRKNSWQDGVLGTN-CPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLL-IGDWFKTNHKILRQTLDSGKSLPF-PDGVLINGQG 665
            T+++  +SP G  +  +L NG FPGP +     DN  +NVI+ L    +L      W+G  Q+  +W DG    N CPI   +++ Y F   DQ G+++Y          G  G +               D + T++ + DW+ T   +       G + P   D  LING G
Sbjct:   31 TISNADVSPDGFTRAAVLANGVFPGPLITGNKGDNFQINVIDNLSNETMLKSTSIHWHGFFQKGTNWADGAAFVNQCPIATGNSFLYDFTATDQAGTFWYHSHLSTQYCDGLRGPMVVYDPSDPHADLYDVDDETTIITLSDWYHTAASL-------GAAFPIGSDSTLINGLG 197          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC16_ARATH (Laccase-16 OS=Arabidopsis thaliana GN=LAC16 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.188e-12
Identity = 46/171 (26.90%), Postives = 80/171 (46.78%), Query Frame = 3
Query:  153 RFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTN-HKILRQTLDSGKSLPFPDGVLING 659
            R Y + V + T + L   + ++ +NGQFPGP +     D I++ V+N +     + W+GI+Q +  W DG    T CPI P  NY + F    Q G+ ++    L  RA   +G I                 + T+++ +W+K++  +++ +    G +    D   ING
Sbjct:   30 RHYKFNVMTNT-TKLCSSKPIVTVNGQFPGPTIVAREGDTILIKVVNHVKYNVSIHWHGIRQLRTGWADGPAYITQCPIQPGQNYLHNFTLTGQRGTLWWHAHILWLRAT-VHGAIVILPKLGVPYPFPKPYKEKTIVLSEWWKSDVEELINEASRIGTAPSASDAHTING 198          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC1_TRAVI (Laccase-1 OS=Trametes villosa GN=LCC1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.027e-12
Identity = 50/179 (27.93%), Postives = 78/179 (43.58%), Query Frame = 3
Query:  168 TVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFL-----LTWNGIKQRKNSWQDGVLGTN-CPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLL-IGDWFKTNHKILRQTLDSGKSLPF-PDGVLINGQGHTTFT 680
            T+T+  +SP G  ++ +++NG  PGP +     D   LNVI+ L    +     + W+G  Q+  +W DG    N CPI    ++ Y FQ  DQ G+++Y          G  G                 D D T++ + DW+    K+       G + P   D  LING+G +  T
Sbjct:   30 TITNAAVSPDGFSRQAVVVNGGTPGPLITGNMGDRFQLNVIDNLTNHTMVKSTSIHWHGFFQKGTNWADGPAFINQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPAADLYDVDNDDTVITLVDWYHVAAKL-------GPAFPLGADATLINGKGRSPST 201          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC7_ARATH (Laccase-7 OS=Arabidopsis thaliana GN=LAC7 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.458e-12
Identity = 45/170 (26.47%), Postives = 77/170 (45.29%), Query Frame = 3
Query:  159 YTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNHKILRQ-TLDSGKSLPFPDGVLINGQ 662
            +T+ V + T+S L   Q + ++NG  PGP + V   D+++++V+N       + W+GI  +   W DG  + T CPI P   Y Y+F    Q G+ ++       RA   YG +                 +  +L G+W+ T+   L +  + +G      D   ING+
Sbjct:   28 HTFNVQNLTVSRLCKRQVITVVNGSLPGPTIRVKEGDSLVIHVLNHSPHNITIHWHGIFHKLTVWADGPSMITQCPIQPGQRYAYRFNITGQEGTLWWHAHASFLRAT-VYGALVIRPKSGHSYPFPKPHKEVPILFGEWWNTDVVALEEAAIATGVPPNNSDAYTINGR 196          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC1_PYCCI (Laccase OS=Pycnoporus cinnabarinus GN=LCC3-1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.458e-12
Identity = 52/179 (29.05%), Postives = 75/179 (41.90%), Query Frame = 3
Query:  168 TVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLT-----WNGIKQRKNSWQDGVLGTN-CPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLL-IGDWFKTNHKILRQTLDSGKSLPF-PDGVLINGQGHTTFT 680
            T+T+  +SP G  +E +++NG  P P +     D   LNVI+ L    +L      W+G  Q   +W DGV   N CPI    ++ Y FQ  DQ G+++Y          G  G                 D D T++ + DW+    K+       G   P   D  LING G +  T
Sbjct:   30 TLTNAAVSPDGFSREAVVVNGITPAPLIAGQKGDRFQLNVIDNLTNHTMLKTTSIHWHGFFQHGTNWADGVSFVNQCPIASGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPQASLYDIDNDDTVITLADWYHVAAKL-------GPRFPLGADATLINGLGRSPGT 201          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC1_ARATH (Laccase-1 OS=Arabidopsis thaliana GN=LAC1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.458e-12
Identity = 37/153 (24.18%), Postives = 72/153 (47.06%), Query Frame = 3
Query:  207 QEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTN-HKILRQTLDSGKSLPFPDGVLING 659
            ++++ +NGQ+PGP + V   D + + V N++     + W+G++Q +  W DG    T CPI    +YTY+F+ +DQ G+  +       RA+  YG                   +  +++G+W+  +   + +  + +G      D   +NG
Sbjct:   47 KQLLTVNGQYPGPTVAVHEGDIVEIKVTNRIAHNTTIHWHGLRQYRTGWADGPAYITQCPIRSKQSYTYRFKVEDQRGTLLWHAHHSWQRAS-VYGAFIIYPRQPYPFSGSHIQSEIPIILGEWWNDDVDNVEKAMMKTGAGAKVSDAYTLNG 198          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC5_ORYSJ (Putative laccase-5 OS=Oryza sativa subsp. japonica GN=LAC5 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 49/194 (25.26%), Postives = 78/194 (40.21%), Query Frame = 3
Query:  153 RFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGS------------YFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTN-HKILRQTLDSGKSLPFPDGVLINGQGHTTFTVIRK 692
            R YT+ V    ++ L V + +  +NGQFPGP+L V   D +++ V N ++      W+GI Q +N W DG    T CPI    +Y Y F    Q G+            + Y P  ++ +   G+                       ++ G+WF  +   ++ Q L +G      D    NG    T+    K
Sbjct:   38 RHYTFNVQMTNVTRLCVTKSIPTVNGQFPGPKLVVREGDRLVVKVHNHMNYNVSFHWHGILQLRNGWADGPSYITQCPIQGGGSYVYDFTVTGQRGTLWWHAHFSWLRVHLYGPLVILPKRGEGFPFPRPYKELP------------PIMFGEWFNADTEAVINQALQTGAGPNISDAYTFNGLPGPTYNCSSK 219          
The following BLAST results are available for this feature:
BLAST of FC920427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
LAC15_ARATH6.967e-1326.63Laccase-15 OS=Arabidopsis thaliana GN=TT10 PE=1 SV... [more]
LAC2_ARATH9.099e-1325.73Laccase-2 OS=Arabidopsis thaliana GN=LAC2 PE=2 SV=... [more]
LAC9_ORYSJ1.188e-1226.25Putative laccase-9 OS=Oryza sativa subsp. japonica... [more]
LAC4_TRAVE1.188e-1228.16Laccase-4 OS=Trametes versicolor GN=LCC4 PE=3 SV=1[more]
LAC16_ARATH1.188e-1226.90Laccase-16 OS=Arabidopsis thaliana GN=LAC16 PE=2 S... [more]
LAC1_TRAVI2.027e-1227.93Laccase-1 OS=Trametes villosa GN=LCC1 PE=3 SV=1[more]
LAC7_ARATH3.458e-1226.47Laccase-7 OS=Arabidopsis thaliana GN=LAC7 PE=2 SV=... [more]
LAC1_PYCCI3.458e-1229.05Laccase OS=Pycnoporus cinnabarinus GN=LCC3-1 PE=1 ... [more]
LAC1_ARATH3.458e-1224.18Laccase-1 OS=Arabidopsis thaliana GN=LAC1 PE=2 SV=... [more]
LAC5_ORYSJ4.516e-1225.26Putative laccase-5 OS=Oryza sativa subsp. japonica... [more]

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Properties
Property NameValue
Genbank descriptionC32008C04EF RVDevelop1 Citrus clementina cDNA clone C32008C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920427 ID=FC920427; Name=FC920427; organism=Citrus clementina; type=EST; length=705bp
GGCGGCCAGAAGCTTAGATTAGATTCCATTAGACTCTCAACTCGACTCGA
CTCAACTTTGAAGCAATGGCGAGAACACTCTTGCTGCCGCTACTGGTCTG
TGTAGTTTTGGCTGCCTTGAGTGTTGCTTTGGTGAAGGCAGACGACCCGT
ATAGATTTTACACTTGGACTGTCACTTCTGGCACTTTGTCTCCTCTTGGC
GTTCCCCAAGAGGTTATTCTTATTAATGGTCAGTTTCCCGGTCCTAGATT
GGATGTGGTAACCAATGATAATATCATACTCAATGTCATTAACAAGCTAG
ATCAACCTTTTCTCCTTACTTGGAATGGAATTAAACAAAGGAAGAATTCA
TGGCAAGATGGAGTCCTTGGAACCAATTGCCCCATTCCTCCAAACTCCAA
CTACACTTACAAATTTCAAACCAAGGATCAGATTGGGTCCTACTTTTACT
TCCCATCAACTCTGATGCACCGAGCTGCTGGAGGATATGGAGGAATCAAT
ATCTATCAGAGACCTCGAATACCGATCCCTTACCCAATCCAGGATGGAGA
TTTCACTTTATTAATTGGCGACTGGTTCAAGACAAACCATAAGATATTAC
GACAGACTTTGGACTCAGGGAAGTCTCTTCCATTTCCAGATGGAGTCCTT
ATCAATGGTCAGGGTCATACCACCTTCACGGTGATCAGGAAAAAACTACA
TGTTT
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