FC920427

Overview
NameFC920427
Unique NameFC920427
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC1_TRAHI (Laccase OS=Trametes hirsuta PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 50/179 (27.93%), Postives = 77/179 (43.02%), Query Frame = 3
Query:  168 TVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLT-----WNGIKQRKNSWQDGVLGTN-CPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLL-IGDWFKTNHKILRQTLDSGKSLPF-PDGVLINGQGHTTFT 680
            T+++  +SP G  ++ +++N   PGP +     D   LNVI+ L    +L      W+G  Q+  +W DG    N CPI    ++ Y FQ  DQ G+++Y          G  G                 D D T++ + DW+ T  K+       G + P   D  LING G +  T
Sbjct:   30 TISNAEVSPDGFARQAVVVNNVTPGPLVAGNKGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQKGTNWADGPAFVNQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASLYDVDNDDTVITLADWYHTAAKL-------GPAFPLGADATLINGLGRSPST 201          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC8_ORYSJ (Laccase-8 OS=Oryza sativa subsp. japonica GN=LAC8 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 42/169 (24.85%), Postives = 75/169 (44.38%), Query Frame = 3
Query:  159 YTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLG-TNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTN-HKILRQTLDSGKSLPFPDGVLING 659
            +T+ V    ++ L +   +   N Q PGP ++V   D ++++ +N    P  L W+G+ Q ++ W DG    T CPI P+ N+TY+F    Q G+ ++   + + RA      I                 +  +L+G+W+  N   +      +G      D + ING
Sbjct:   26 HTFKVGGTKITQLCMNSVIYTANQQLPGPTIEVTEGDTLVVHAVNDSPYPLSLHWHGVYQLRSGWNDGANKITQCPIQPSGNFTYRFNITGQEGTLWWHAHSSLLRATIYGALIIKPRNGPSGYPFPEPYEEIPILLGEWWNRNVDDVENDGYLTGLGPQISDALTING 194          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC8_ARATH (Laccase-8 OS=Arabidopsis thaliana GN=LAC8 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 44/159 (27.67%), Postives = 72/159 (45.28%), Query Frame = 3
Query:  186 LSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGV-LGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTNHKILRQTLDSGKSLPFPDGVLING 659
            + PL   Q +   NG  PGP ++V   D +++NVIN       + W+G+ Q K+ W DG  + T CPI P  N+TY+F    Q G+  +    +  RA   +G +                 +  ++   W+ T+ ++L+      +  P  D  LING
Sbjct:   39 VKPLCKEQIIPAANGSLPGPTINVREGDTLVVNVINNSTYNVTIHWHGVFQLKSVWMDGANMITQCPIQPGYNFTYQFDITGQEGTLLWHAHVVNLRAT-LHGALVIRPRSGRPYPFPKPYKEVPIVFQQWWDTDVRLLQL-----RPAPVSDAYLING 191          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC1_BOTFU (Laccase-1 OS=Botryotinia fuckeliana GN=lcc1 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 43/117 (36.75%), Postives = 60/117 (51.28%), Query Frame = 3
Query:  147 PYRFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKL-DQPFLLTWNGIKQRKNSWQDGVLG-TNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYG 491
            P   Y   V + TLS  GV +  +  NG  PGP++     D++I++V NKL      + W+GI+Q  N+  DGV G T CPI P    TYKF   D  GS +Y    ++    G +G
Sbjct:   61 PKTGYWLVVQNTTLSADGVSRPTLNFNGTIPGPQITADWGDDVIVHVTNKLTSNGTSIHWHGIRQLNNAQYDGVPGITQCPIAPGGTLTYKFHA-DNYGSSWYHSHFILQYGDGLFG 176          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC4_ORYSJ (Laccase-4 OS=Oryza sativa subsp. japonica GN=LAC4 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 42/171 (24.56%), Postives = 72/171 (42.11%), Query Frame = 3
Query:  153 RFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTN-HKILRQTLDSGKSLPFPDGVLING 659
            R Y + V     + L   + ++ +NGQ PGP L     D +++ V N +     L W+G++Q +  W DG    T CPI    +Y Y F    Q G+ ++       RA   YG +                 +  ++ G+W+  +  +++ Q + +G      D   ING
Sbjct:   31 RHYEFNVQMANATRLCNTKSMVTVNGQCPGPELVAREGDRVVIRVTNNVAHNISLHWHGVRQVRTGWADGPAYITQCPIQTGQSYVYNFTVAGQRGTLWWHAHISWLRAT-VYGALVILPKLGVPYPFPAPHKEVPVIFGEWWNADTEEVVNQAVQTGGGPNVSDAFTING 200          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC12_ORYSJ (Laccase-12/13 OS=Oryza sativa subsp. japonica GN=LAC12 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 42/171 (24.56%), Postives = 77/171 (45.03%), Query Frame = 3
Query:  153 RFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFTLLIGDWFKTN-HKILRQTLDSGKSLPFPDGVLING 659
            R Y + V + +++ L   + ++ +NGQ+PGP L     D++ + V+N       + W+GI+Q  + W DG    T CPI P  +Y Y+F    Q G+ ++       RA   +G +                 +  ++ G+W+  +   ++ Q L +G      D   +NG
Sbjct:   30 RQYLFDVQTTSVTRLCSTKSIVTVNGQYPGPTLFAREGDHVEVTVVNHSPYNMSIHWHGIRQLLSGWADGPSYITQCPIQPGGSYVYRFTITGQRGTLWWHAHISWLRAT-VHGPMVILPPAGVGYPFPAPHEEVPIMFGEWWNNDTEAVISQALQTGGGPNISDAYTLNG 199          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC4_THACU (Laccase-4 OS=Thanatephorus cucumeris GN=LCC4 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 47/182 (25.82%), Postives = 80/182 (43.96%), Query Frame = 3
Query:  153 RFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFL-----LTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINXXXXXXXXXXXXXXDGDFT-LLIGDWFKTNHKILRQTLDSGKSL----PFPDGVLINGQG 665
            R Y + + +  ++P G  + ++ +NG  PG  +     D + +NV N+L  P +     + W+G+ Q   + +DG    T CPI  N +YTY+     Q G+ +Y          G  G +               D   T +++ DW+ T   +L + + S  +     P PD  LING+G
Sbjct:   23 RNYKFDIKNVNVAPDGFQRPIVSVNGLVPGTLITANKGDTLRINVTNQLTDPSMRRATTIHWHGLFQATTADEDGPAFVTQCPIAQNLSYTYEIPLHGQTGTMWYHAHLASQYVDGLRGPLVIYDPNDPHKSRYDVDDASTVVMLEDWYHTPAPVLEKQMFSTNNTALLSPVPDSGLINGKG 204          
BLAST of FC920427 vs. ExPASy Swiss-Prot
Match: LAC1_ORYSJ (Putative laccase-1 OS=Oryza sativa subsp. japonica GN=LAC1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 35/109 (32.11%), Postives = 58/109 (53.21%), Query Frame = 3
Query:  153 RFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG-VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRA 476
            R Y + +T    + L   + ++ +NGQFPGP +     D II+NV N  ++   + W+G+ Q +N W DG    T CPI P  N+TY+    ++ G+ ++   +   RA
Sbjct:   32 RHYDFFITETNYTRLCHEKSILTVNGQFPGPTIYARKGDFIIVNVHNNGNKNITIHWHGVDQPRNPWSDGPEFITQCPIRPGGNFTYQVILFEEEGTLWWHAHSDFDRA 140          
The following BLAST results are available for this feature:
BLAST of FC920427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
LAC1_TRAHI5.898e-1227.93Laccase OS=Trametes hirsuta PE=1 SV=1[more]
LAC8_ORYSJ7.703e-1224.85Laccase-8 OS=Oryza sativa subsp. japonica GN=LAC8 ... [more]
LAC8_ARATH7.703e-1227.67Laccase-8 OS=Arabidopsis thaliana GN=LAC8 PE=2 SV=... [more]
LAC1_BOTFU7.703e-1236.75Laccase-1 OS=Botryotinia fuckeliana GN=lcc1 PE=2 S... [more]
LAC4_ORYSJ1.006e-1124.56Laccase-4 OS=Oryza sativa subsp. japonica GN=LAC4 ... [more]
LAC12_ORYSJ1.716e-1124.56Laccase-12/13 OS=Oryza sativa subsp. japonica GN=L... [more]
LAC4_THACU3.823e-1125.82Laccase-4 OS=Thanatephorus cucumeris GN=LCC4 PE=1 ... [more]
LAC1_ORYSJ3.823e-1132.11Putative laccase-1 OS=Oryza sativa subsp. japonica... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32008C04EF RVDevelop1 Citrus clementina cDNA clone C32008C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920427 ID=FC920427; Name=FC920427; organism=Citrus clementina; type=EST; length=705bp
GGCGGCCAGAAGCTTAGATTAGATTCCATTAGACTCTCAACTCGACTCGA
CTCAACTTTGAAGCAATGGCGAGAACACTCTTGCTGCCGCTACTGGTCTG
TGTAGTTTTGGCTGCCTTGAGTGTTGCTTTGGTGAAGGCAGACGACCCGT
ATAGATTTTACACTTGGACTGTCACTTCTGGCACTTTGTCTCCTCTTGGC
GTTCCCCAAGAGGTTATTCTTATTAATGGTCAGTTTCCCGGTCCTAGATT
GGATGTGGTAACCAATGATAATATCATACTCAATGTCATTAACAAGCTAG
ATCAACCTTTTCTCCTTACTTGGAATGGAATTAAACAAAGGAAGAATTCA
TGGCAAGATGGAGTCCTTGGAACCAATTGCCCCATTCCTCCAAACTCCAA
CTACACTTACAAATTTCAAACCAAGGATCAGATTGGGTCCTACTTTTACT
TCCCATCAACTCTGATGCACCGAGCTGCTGGAGGATATGGAGGAATCAAT
ATCTATCAGAGACCTCGAATACCGATCCCTTACCCAATCCAGGATGGAGA
TTTCACTTTATTAATTGGCGACTGGTTCAAGACAAACCATAAGATATTAC
GACAGACTTTGGACTCAGGGAAGTCTCTTCCATTTCCAGATGGAGTCCTT
ATCAATGGTCAGGGTCATACCACCTTCACGGTGATCAGGAAAAAACTACA
TGTTT
back to top