FC920435

Overview
NameFC920435
Unique NameFC920435
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13865 contig Ccv1_Contig13865:16..659. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920435 vs. ExPASy Swiss-Prot
Match: ISPH_PROM5 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9515) GN=ispH PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.183e-29
Identity = 57/124 (45.97%), Postives = 82/124 (66.13%), Query Frame = 3
Query:  258 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKAFDVVN 629
            D +  +H++  S  YNR+GF    +  + + + Y SD+I  ++EN F +  G +K+KLA+S+GFCWGVERAV +AYE R+ +P E IW+TNEIIHNP+VN  L  M V+ I  + G K F  V+
Sbjct:    2 DTQAIKHSVQHSGRYNRKGFESPTQRAKALGESYQSDLIASIRENNFSFEKGRLKIKLAKSFGFCWGVERAVAMAYETRRHYPNEDIWMTNEIIHNPSVNNHLSRMNVKIISAKNGIKDFSSVS 125          
BLAST of FC920435 vs. ExPASy Swiss-Prot
Match: ISPH_SYNY3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=ispH PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 8.772e-25
Identity = 51/95 (53.68%), Postives = 71/95 (74.74%), Query Frame = 3
Query:  342 LMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKAFDVV 626
            +MN EY S +I+++++N +    G+V + LAE++GFCWGVERAV +AYE R+ FP +++WITNEIIHNP+VN+RL EM V  I V  G+K F  V
Sbjct:    3 VMNTEYQSHLIQEIRQNNYRLERGDVTILLAEAFGFCWGVERAVAMAYETRQHFPGDRLWITNEIIHNPSVNQRLREMEVNFIDVVNGEKDFSGV 97          
BLAST of FC920435 vs. ExPASy Swiss-Prot
Match: ISPH_GLOVI (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Gloeobacter violaceus GN=ispH PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.161e-23
Identity = 48/105 (45.71%), Postives = 71/105 (67.62%), Query Frame = 3
Query:  288 RSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEE 602
            +S NY R+GFG K E  + +  EY S +I +++ NG+    G V V+LAE++GFCWGV++AV +AYE  + F   ++WITNEIIHNP VN+ L  M ++ +  +E
Sbjct:    2 QSKNYFRKGFGLKAEVQDDLKAEYESSLIHEIRANGYTLRRGGVTVRLAEAFGFCWGVDKAVSMAYETHRMFAGRQLWITNEIIHNPLVNQHLRAMGIRFLDEDE 106          
The following BLAST results are available for this feature:
BLAST of FC920435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ISPH_PROM51.183e-2945.974-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNY38.772e-2553.684-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_GLOVI2.161e-2345.714-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionC32008D07EF RVDevelop1 Citrus clementina cDNA clone C32008D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920435 ID=FC920435; Name=FC920435; organism=Citrus clementina; type=EST; length=644bp
GGAGCACGGTTCATAGTTCATTCTCAGACTCCACGCTGTCCGCCAACTTT
TGCGCCGTCTCTTTCTCGCTGAATCCGTGAATCTCCCTCATCATGGCGAC
GACTCTGCAGTTCTGCCGTGTTTGCGCGCGAACTGACATAGGTTCGCGCC
ATAATAATCGCTCCGGAGCGCTGGCTCCGCCGCGCCGGAGGCCTGTGATC
GTCAGGTGCTCCGGTGAAAAATCGACGAGCTCGGCGGCGGCTATTGGTGC
CGAATTTGACGCGAAACTGTTTCGGCATAACTTGACGAGAAGTGATAATT
ACAATCGGAGAGGATTTGGCCACAAGGAAGAGACTTTGGAGCTCATGAAT
CAGGAGTACACAAGTGATATTATAAAGAAATTGAAGGAGAATGGATTTGA
GTATACTTGGGGAAATGTTAAGGTGAAGCTGGCCGAATCATATGGCTTTT
GCTGGGGAGTTGAGCGTGCTGTGCAGATTGCTTATGAAGCAAGAAAACAG
TTTCCCGAGGAGAAGATCTGGATTACCAATGAAATCATACACAATCCAAC
TGTTAATAAGCGGTTGGAGGAGATGGCAGTTCAAAATATACCTGTTGAGG
AAGGAAAGAAAGCATTTGATGTGGTAAATAGGGTGATGNTGTGG
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