FC920452

Overview
NameFC920452
Unique NameFC920452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length656
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920452_ssr3 microsatellite FC920452_ssr3:3..24. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14105 contig Ccv1_Contig14105:25..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920452 vs. ExPASy Swiss-Prot
Match: GSP1_YARLI (GTP-binding nuclear protein GSP1/Ran OS=Yarrowia lipolytica GN=GSP1 PE=3 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.132e-83
Identity = 144/180 (80.00%), Postives = 160/180 (88.89%), Query Frame = 1
Query:  115 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 654
            +FKLV+VGDGGTGKTTFVKRH TGEF  +Y  T+GVEVHPL+F T+CG IRF  WDTAGQEKFGGLRDGYYI+GQC IIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P+L FV +PAL P E  I
Sbjct:    7 AFKLVLVGDGGTGKTTFVKRHETGEFVNRYNATLGVEVHPLNFATDCGNIRFDVWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPSLEFVATPALRPAETAI 186          
BLAST of FC920452 vs. ExPASy Swiss-Prot
Match: RANT_RAT (GTP-binding nuclear protein Ran, testis-specific isoform OS=Rattus norvegicus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 4.756e-82
Identity = 142/177 (80.23%), Postives = 157/177 (88.70%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEV 648
            FKLV+VGDGGTGKTTF+KRHLTGEFEK+Y  T+GVEVH L F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP+WH+DL RVCENIPIVLCGNKVD+K+ +VKAK + FHRKKNLQYY+ISAKSNYNFEKPF +LARKL GDPNL FV  PALAPPEV
Sbjct:   11 FKLVLVGDGGTGKTTFMKRHLTGEFEKEYVATLGVEVHTLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPSWHKDLVRVCENIPIVLCGNKVDIKDMKVKAKPILFHRKKNLQYYDISAKSNYNFEKPFFWLARKLIGDPNLEFVAMPALAPPEV 187          
BLAST of FC920452 vs. ExPASy Swiss-Prot
Match: RAN4_ARATH (GTP-binding nuclear protein Ran-4 OS=Arabidopsis thaliana GN=RAN4 PE=3 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.060e-81
Identity = 140/183 (76.50%), Postives = 161/183 (87.98%), Query Frame = 1
Query:   79 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESP 627
            MALP+QQ VD P+FKL+IVGDGGTGKTTF+KRHLTGEFE   EPT+GV+++PLDFFTN GKIRF CWDTAGQEK+ GL+D YYIHGQCAIIMFDVTAR TY N+  W+RDL RVC+NIPIVLCGNKVDV +RQ+K K V++HRKK LQYYE+SAK+N NFEKPFLYLAR++AGD  L FVESP
Sbjct:    1 MALPNQQNVDLPTFKLLIVGDGGTGKTTFLKRHLTGEFEHNTEPTLGVDIYPLDFFTNRGKIRFECWDTAGQEKYSGLKDAYYIHGQCAIIMFDVTARHTYMNIDRWYRDLRRVCKNIPIVLCGNKVDVPSRQIKPKHVSYHRKKCLQYYEMSAKNNCNFEKPFLYLARRIAGDAKLSFVESP 183          
BLAST of FC920452 vs. ExPASy Swiss-Prot
Match: RANT_MOUSE (GTP-binding nuclear protein Ran, testis-specific isoform OS=Mus musculus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 1.807e-81
Identity = 141/177 (79.66%), Postives = 157/177 (88.70%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEV 648
            FK+V+VGDGGTGKTTF+KRHLTGEFEK+Y  T+GVEVH L F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP+WH+DL RVCENIPIVLCGNKVDVK+ +VKAK + FHRKKNLQYY+ISA+SNYNFEKPF +LARKL GDPNL FV  PALAPPEV
Sbjct:   11 FKVVLVGDGGTGKTTFMKRHLTGEFEKEYVATLGVEVHTLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPSWHKDLVRVCENIPIVLCGNKVDVKDMKVKAKPILFHRKKNLQYYDISARSNYNFEKPFFWLARKLIGDPNLEFVAMPALAPPEV 187          
BLAST of FC920452 vs. ExPASy Swiss-Prot
Match: RAN_PLAFA (GTP-binding nuclear protein Ran OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 5.093e-76
Identity = 133/181 (73.48%), Postives = 155/181 (85.64%), Query Frame = 1
Query:  112 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 654
            P +KL++VGDGG GKTTFVKRHLTGEFEKKY PT+GVEVHPL F TN GK +F  WDTAGQEKFGGLRDGYYI   CAIIMFDV++R+TYKNVP W+RD+ RVCE IP+VL GNKVDVK+RQVK++Q+ FHRK+NLQYY++SA+SNYNFEKPFL+LAR+L+  PNL FV   A A PE QI
Sbjct:    8 PQYKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFQTNFGKTQFNVWDTAGQEKFGGLRDGYYIKSDCAIIMFDVSSRITYKNVPNWYRDITRVCETIPMVLVGNKVDVKDRQVKSRQIQFHRKRNLQYYDLSARSNYNFEKPFLWLARRLSNQPNLVFVGEHAKA-PEFQI 187          
BLAST of FC920452 vs. ExPASy Swiss-Prot
Match: RAN_DICDI (GTP-binding nuclear protein Ran OS=Dictyostelium discoideum GN=ranA PE=1 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.090e-73
Identity = 126/175 (72.00%), Postives = 145/175 (82.86%), Query Frame = 1
Query:  121 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPE 645
            KLV+VGDGG GKTTFV+RHLTGEFE +Y PT+GV VHPL F+TN GKI F  WDTAGQEKFGGLRDGYYI G CAIIMFDVT+R++YKNVP WH DL RVCENIPIVLCGNKVDVK+R+VK  Q+ FHR+ NL YY++SAKSNYNFEKPF++L  KL G+  +  V+ P L  PE
Sbjct:    8 KLVLVGDGGVGKTTFVQRHLTGEFEPRYIPTLGVSVHPLIFYTNFGKIHFNVWDTAGQEKFGGLRDGYYIQGNCAIIMFDVTSRISYKNVPNWHSDLTRVCENIPIVLCGNKVDVKDRKVKPSQIVFHRRYNLSYYDVSAKSNYNFEKPFVWLTSKLLGNKAVTLVQQPTLKLPE 182          
BLAST of FC920452 vs. ExPASy Swiss-Prot
Match: RAN_TETTH (GTP-binding nuclear protein Ran OS=Tetrahymena thermophila PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.137e-67
Identity = 118/178 (66.29%), Postives = 143/178 (80.34%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQ 651
            FKLV+VGDGG GKTTFV RH TGEFEK+Y  T GV V  +  +T  G IRF  WDTAGQEK GGLR+GYYI    AI+MFDVT+R+TYKN+P WH+DL R+CENIPIVL GNKVD K+R+VKA+Q+TFHRK++LQYY++SAKSNY +EKPFL++ RKL GDP L+ VE  AL  P+ +
Sbjct:   12 FKLVLVGDGGVGKTTFVTRHQTGEFEKRYIATQGVNVSNMVLYTTKGPIRFNIWDTAGQEKLGGLREGYYIGANAAIMMFDVTSRITYKNIPKWHKDLTRICENIPIVLVGNKVDSKDRKVKARQITFHRKRSLQYYDVSAKSNYQYEKPFLWILRKLTGDPTLNLVEGIALVAPDTE 189          
BLAST of FC920452 vs. ExPASy Swiss-Prot
Match: RAN_TETPY (GTP-binding nuclear protein Ran OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.137e-67
Identity = 118/179 (65.92%), Postives = 144/179 (80.45%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 654
            FKLV+VGDGG GKTTFV RH TGEFEK+Y  T GV V  +   T  G IRF  WDTAGQEK GGLR+GYYI    AI+MFDVT+R+TYKN+P WH+DL R+CEN+PIVL GNKVD K+ +VKA+Q+TFHRK++LQYY++SAKSNY +EKPFL++ RKL GDPNL+ VE  ALAP ++ +
Sbjct:   12 FKLVLVGDGGVGKTTFVTRHQTGEFEKRYIATQGVNVSNMILHTTKGAIRFNIWDTAGQEKLGGLREGYYIGADAAIMMFDVTSRITYKNIPKWHKDLTRICENVPIVLVGNKVDSKDSKVKARQITFHRKRSLQYYDVSAKSNYQYEKPFLWILRKLTGDPNLNLVEGIALAPVDIHM 190          
BLAST of FC920452 vs. ExPASy Swiss-Prot
Match: RANL_DROME (GTP-binding nuclear protein Ran-like OS=Drosophila melanogaster GN=ran-like PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 9.963e-64
Identity = 113/177 (63.84%), Postives = 136/177 (76.84%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEV 648
            FKL+++GDGGTGKTT VKRHLTGEF+ +Y  T+GVEV  L F TN G  R   WDTAGQE++GGLRDGY++  QCAIIMFDV +  TY NV  WHRDL RVC NIPIV+CGNKVD+ +++   K V F RK N+   E+SAKSNYN EKPF+YL RKL GDP+L  V+SPA+ PP+V
Sbjct:   11 FKLILIGDGGTGKTTLVKRHLTGEFKMQYNATLGVEVEQLLFNTNRGVFRIDVWDTAGQERYGGLRDGYFVQSQCAIIMFDVASSNTYNNVKRWHRDLVRVCGNIPIVICGNKVDIMHKKTWKKGVDFDRKTNIYLIEMSAKSNYNVEKPFVYLLRKLVGDPSLQLVQSPAIQPPKV 187          
BLAST of FC920452 vs. ExPASy Swiss-Prot
Match: RAN_GIALA (GTP-binding nuclear protein Ran OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.342e-51
Identity = 97/195 (49.74%), Postives = 129/195 (66.15%), Query Frame = 1
Query:  115 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT------NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-----------IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEV 648
            SFK+++VGDG TGKTTFV RH+TGEF K+Y  TIGVE+  L F+       N  ++     DTAGQEKFGGLRDGYY+     ++ FDVT R+TYKNV +W+RD+ R+C             + IVL GNK DVK+R+++ + V FHR KN+ Y EISAK N+N+E P L + R L  DP + F ++PAL P ++
Sbjct:    6 SFKVILVGDGATGKTTFVTRHITGEFRKQYISTIGVEIRQLPFYVAGQSCPNGREVLLNVHDTAGQEKFGGLRDGYYVDSDACLLFFDVTNRVTYKNVESWYRDVFRICPTRRDASTGEEKPLAIVLVGNKCDVKDREIRTQTVKFHRSKNIPYVEISAKDNFNYELPILSILRTLLNDPTIQFSQAPALLPADI 200          
The following BLAST results are available for this feature:
BLAST of FC920452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSP1_YARLI1.132e-8380.00GTP-binding nuclear protein GSP1/Ran OS=Yarrowia l... [more]
RANT_RAT4.756e-8280.23GTP-binding nuclear protein Ran, testis-specific i... [more]
RAN4_ARATH1.060e-8176.50GTP-binding nuclear protein Ran-4 OS=Arabidopsis t... [more]
RANT_MOUSE1.807e-8179.66GTP-binding nuclear protein Ran, testis-specific i... [more]
RAN_PLAFA5.093e-7673.48GTP-binding nuclear protein Ran OS=Plasmodium falc... [more]
RAN_DICDI3.090e-7372.00GTP-binding nuclear protein Ran OS=Dictyostelium d... [more]
RAN_TETTH1.137e-6766.29GTP-binding nuclear protein Ran OS=Tetrahymena the... [more]
RAN_TETPY1.137e-6765.92GTP-binding nuclear protein Ran OS=Tetrahymena pyr... [more]
RANL_DROME9.963e-6463.84GTP-binding nuclear protein Ran-like OS=Drosophila... [more]
RAN_GIALA4.342e-5149.74GTP-binding nuclear protein Ran OS=Giardia lamblia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32008F01EF RVDevelop1 Citrus clementina cDNA clone C32008F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920452 ID=FC920452; Name=FC920452; organism=Citrus clementina; type=EST; length=656bp
GGTCTCTCTCTCTCTCTCTCTCTCAGTTCTGTGTTCAGACCGCGAACTTC
GTATTCTTTCGCACACAGTACTCAACTCATGGCTCTGCCAAGTCAGCAAA
CTGTTGATTACCCGAGCTTCAAACTCGTCATAGTCGGCGACGGTGGCACT
GGGAAGACTACCTTTGTGAAGAGGCATCTGACTGGGGAGTTTGAGAAGAA
GTATGAACCAACTATTGGTGTGGAGGTTCATCCGTTGGATTTCTTTACAA
ATTGTGGCAAAATCCGTTTCTACTGCTGGGACACTGCTGGCCAGGAAAAG
TTTGGTGGTCTTAGAGATGGTTATTACATCCATGGGCAATGTGCCATCAT
TATGTTTGATGTTACTGCCCGATTGACATACAAGAATGTCCCCACTTGGC
ACCGTGATCTTTGCCGGGTGTGTGAAAATATACCGATTGTTCTCTGTGGG
AACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGCAAAGCAGGTTACCTT
CCACAGGAAGAAGAATCTACAGTACTATGAGATTTCTGCCAAGAGCAACT
ACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGGAAGCTTGCTGGGGAC
CCAAATTTGCACTTCGTGGAATCTCCTGCTCTCGCTCCTCCAGAAGTACA
GATTGA
back to top