FC920452

Overview
NameFC920452
Unique NameFC920452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length656
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920452 vs. ExPASy Swiss-Prot
Match: RAB38_MOUSE (Ras-related protein Rab-38 OS=Mus musculus GN=Rab38 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.117e-14
Identity = 59/190 (31.05%), Postives = 93/190 (48.95%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH-PLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVD-----VKNRQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARK-LAGDPNLHFVESPALAPPEV 648
            +KL+++GD G GKT+ +KR++   F   Y  TIGV+    +  +     +R   WD AGQE+FG +   YY     A I+FDVT   T++ V  W  DL         + + +VL  NK D     + N  +K  Q  F ++   + ++E SAK N N ++    L +  LA + +L     P +  P +
Sbjct:   10 YKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPVSVVLLANKCDQGKDVLMNNGLKMDQ--FCKEHGFVGWFETSAKENINIDEASRCLVKHILANECDLLESIEPDIVKPHL 197          
BLAST of FC920452 vs. ExPASy Swiss-Prot
Match: RAB38_HUMAN (Ras-related protein Rab-38 OS=Homo sapiens GN=RAB38 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.117e-14
Identity = 59/190 (31.05%), Postives = 93/190 (48.95%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH-PLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVD-----VKNRQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARK-LAGDPNLHFVESPALAPPEV 648
            +KL+++GD G GKT+ +KR++   F   Y  TIGV+    +  +     +R   WD AGQE+FG +   YY     A I+FDVT   T++ V  W  DL         + + +VL  NK D     + N  +K  Q  F ++   + ++E SAK N N ++    L +  LA + +L     P +  P +
Sbjct:   10 YKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLANKCDQGKDVLMNNGLKMDQ--FCKEHGFVGWFETSAKENINIDEASRCLVKHILANECDLMESIEPDVVKPHL 197          
BLAST of FC920452 vs. ExPASy Swiss-Prot
Match: RP1BL_HUMAN (Ras-related protein Rap-1b-like protein OS=Homo sapiens PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.459e-14
Identity = 49/163 (30.06%), Postives = 87/163 (53.37%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 591
            +KLV++G  G GK+    + + G F +KY+PTI  + +      +  +      DTAG E+F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   +++P++L GNK D+++ +V  K   Q    +  N  + E SAKS  N  + F  L R++
Sbjct:    4 YKLVVLGSRGVGKSALTVQFVQGIFVEKYDPTIE-DSYREQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of FC920452 vs. ExPASy Swiss-Prot
Match: RAS_EMENI (Ras-like protein OS=Emericella nidulans GN=AN0182 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.459e-14
Identity = 51/172 (29.65%), Postives = 89/172 (51.74%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI----------GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 591
            +KLV+VG GG GK+    + +   F  +Y+PTI            EV  LD             DTAGQE++  +R+ Y   G+  ++++ +T+R +++ + T+ + + RV +    PI++ GNK D+   +V ++Q   +  R+   ++ E SAKS  N E  F  L R++
Sbjct:    9 YKLVVVGGGGVGKSCLTIQLIQSHFVDEYDPTIEDSYRKQCVIDDEVALLDVL-----------DTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEIMTFQQQILRVKDKDYFPIIVVGNKCDLDKERVVSEQEGESLARQFGCKFIETSAKSRINVENAFYDLVREI 169          
BLAST of FC920452 vs. ExPASy Swiss-Prot
Match: RAS1_DROPS (Ras-like protein 1 OS=Drosophila pseudoobscura pseudoobscura GN=Ras85D PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.459e-14
Identity = 50/164 (30.49%), Postives = 85/164 (51.83%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAGD 600
            +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE++  +RD Y   G+  +++F V +  +++++ T+   + RV   E +P+VL GNK D+    VK +Q     K+  + Y E SAK+    +  F  L R++  D
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLTTWNVKNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKD 166          
BLAST of FC920452 vs. ExPASy Swiss-Prot
Match: RAS1_DROPE (Ras-like protein 1 OS=Drosophila persimilis GN=Ras85D PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.459e-14
Identity = 50/164 (30.49%), Postives = 85/164 (51.83%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAGD 600
            +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE++  +RD Y   G+  +++F V +  +++++ T+   + RV   E +P+VL GNK D+    VK +Q     K+  + Y E SAK+    +  F  L R++  D
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLTTWNVKNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRKD 166          
BLAST of FC920452 vs. ExPASy Swiss-Prot
Match: RABQ_DICDI (Ras-related protein RabQ OS=Dictyostelium discoideum GN=rabQ PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.459e-14
Identity = 47/160 (29.38%), Postives = 85/160 (53.12%), Query Frame = 1
Query:  121 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQV-KAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 591
            K ++ G    GK++ + +    EF  + + TIGVE        +  KI+   WDTAGQE F  +   YY     A++ +D+T R +++ +  W  ++ ++   NI I L GNK D K+++V   ++   + K+N + ++E SAK   + E  F  +++K+
Sbjct:    7 KCIVTGPPFVGKSSLLLQFCEKEFSFEMDTTIGVEFQTRSILIDSSKIKLEIWDTAGQESFRSITTNYYRGAHIALLCYDITKRQSFQYLSGWMDEVRQMSSPNIVIALIGNKCDCKDKRVITTEEGAKNAKENDILFFETSAKDYESVESVFDGVSKKV 166          
BLAST of FC920452 vs. ExPASy Swiss-Prot
Match: RABA_DICDI (Ras-related protein RabA OS=Dictyostelium discoideum GN=rabA PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.459e-14
Identity = 47/159 (29.56%), Postives = 82/159 (51.57%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLAR 585
            FK + VGD G GK++ + R     F + Y  TIGV+      +     I+   WDTAGQE+F    +  Y      ++++DVT + +++NV  W +++ R   +N+  ++ GNK D+ +++V    +   F    ++ + E SAK   N E  F+ L +
Sbjct:    9 FKFIFVGDSGVGKSSILLRFTEDTFTESYISTIGVDFKIKTVYIEGKAIKLQIWDTAGQERFRVHNNSQYRGCHAVMVVYDVTDQRSFENVAKWIQEIERYARDNVIKMIIGNKSDMISQKVVDPFLAQEFADSLDITFKETSAKQAINIEDAFISLVK 167          
BLAST of FC920452 vs. ExPASy Swiss-Prot
Match: RASS_DICDI (Ras-like protein rasS OS=Dictyostelium discoideum GN=rasS PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.905e-14
Identity = 54/172 (31.40%), Postives = 88/172 (51.16%), Query Frame = 1
Query:  115 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR--KLAGDPNLH 612
            +FKLV+VG GG GK+    + +  +F  +Y+PT+  + +      +  +     +DTAGQE F  +RD Y   G+  + ++ +T   ++K +   H  L +V   +++P VL GNK D+   R+V  A+     +K N ++ E SAK   N  + F  L R  K A   N H
Sbjct:    3 NFKLVLVGPGGVGKSCLTIQFIAQKFVDEYDPTLE-DSYRKQTTVDGEECLLDIYDTAGQEDFSAVRDQYMRTGEGFLCVYSITYLQSFKEIHRLHNHLLKVKDLDSVPFVLVGNKCDLNEYREVSTAEGEELAKKLNCKFLETSAKERINVSESFYELVREVKKARQSNQH 173          
BLAST of FC920452 vs. ExPASy Swiss-Prot
Match: RAS2_YEAST (Ras-like protein 2 OS=Saccharomyces cerevisiae GN=RAS2 PE=1 SV=4)

HSP 1 Score: 79.337 bits (194), Expect = 1.905e-14
Identity = 51/170 (30.00%), Postives = 88/170 (51.76%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI----------GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 585
            +KLV+VG GG GK+    +     F  +Y+PTI            EV  LD             DTAGQE++  +R+ Y  +G+  ++++ +T++ +   + T+++ + RV   + +PIV+ GNK D++N +  + Q  +   ++ N  + E SAK   N E+ F  LAR
Sbjct:   11 YKLVVVGGGGVGKSALTIQLTQSHFVDEYDPTIEDSYRKQVVIDDEVSILDIL-----------DTAGQEEYSAMREQYMRNGEGFLLVYSITSKSSLDELMTYYQQILRVKDTDYVPIVVVGNKSDLENEKQVSYQDGLNMAKQMNAPFLETSAKQAINVEEAFYTLAR 169          
The following BLAST results are available for this feature:
BLAST of FC920452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB38_MOUSE1.117e-1431.05Ras-related protein Rab-38 OS=Mus musculus GN=Rab3... [more]
RAB38_HUMAN1.117e-1431.05Ras-related protein Rab-38 OS=Homo sapiens GN=RAB3... [more]
RP1BL_HUMAN1.459e-1430.06Ras-related protein Rap-1b-like protein OS=Homo sa... [more]
RAS_EMENI1.459e-1429.65Ras-like protein OS=Emericella nidulans GN=AN0182 ... [more]
RAS1_DROPS1.459e-1430.49Ras-like protein 1 OS=Drosophila pseudoobscura pse... [more]
RAS1_DROPE1.459e-1430.49Ras-like protein 1 OS=Drosophila persimilis GN=Ras... [more]
RABQ_DICDI1.459e-1429.38Ras-related protein RabQ OS=Dictyostelium discoide... [more]
RABA_DICDI1.459e-1429.56Ras-related protein RabA OS=Dictyostelium discoide... [more]
RASS_DICDI1.905e-1431.40Ras-like protein rasS OS=Dictyostelium discoideum ... [more]
RAS2_YEAST1.905e-1430.00Ras-like protein 2 OS=Saccharomyces cerevisiae GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32008F01EF RVDevelop1 Citrus clementina cDNA clone C32008F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920452 ID=FC920452; Name=FC920452; organism=Citrus clementina; type=EST; length=656bp
GGTCTCTCTCTCTCTCTCTCTCTCAGTTCTGTGTTCAGACCGCGAACTTC
GTATTCTTTCGCACACAGTACTCAACTCATGGCTCTGCCAAGTCAGCAAA
CTGTTGATTACCCGAGCTTCAAACTCGTCATAGTCGGCGACGGTGGCACT
GGGAAGACTACCTTTGTGAAGAGGCATCTGACTGGGGAGTTTGAGAAGAA
GTATGAACCAACTATTGGTGTGGAGGTTCATCCGTTGGATTTCTTTACAA
ATTGTGGCAAAATCCGTTTCTACTGCTGGGACACTGCTGGCCAGGAAAAG
TTTGGTGGTCTTAGAGATGGTTATTACATCCATGGGCAATGTGCCATCAT
TATGTTTGATGTTACTGCCCGATTGACATACAAGAATGTCCCCACTTGGC
ACCGTGATCTTTGCCGGGTGTGTGAAAATATACCGATTGTTCTCTGTGGG
AACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGCAAAGCAGGTTACCTT
CCACAGGAAGAAGAATCTACAGTACTATGAGATTTCTGCCAAGAGCAACT
ACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGGAAGCTTGCTGGGGAC
CCAAATTTGCACTTCGTGGAATCTCCTGCTCTCGCTCCTCCAGAAGTACA
GATTGA
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