FC920459

Overview
NameFC920459
Unique NameFC920459
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15077 contig Ccv1_Contig15077:763..1463. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_SHESH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sediminis (strain HAW-EB3) GN=gpmI PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.647e-30
Identity = 75/224 (33.48%), Postives = 122/224 (54.46%), Query Frame = 2
Query:   29 HKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            H++ +AVEA++    + + ND+++    I+D  G +   + DGDA++  NFRADR   + ++    DFD F+R   PK  +  + +Y  ++K    Y      +  T GE L  +       SET K+ HVTFF+NG +   F    E+ + I S    T+++QP+M + E+ ++  +AI S ++    C  PN DMVGHTG  +A V AC+A D  +  ++DA
Sbjct:  214 HQYSNAVEALEAAYAR-DENDEFVGSSAILDAQGDSA-QLADGDALIFMNFRADRARQITRSFVDADFDGFERNVTPKAHFVMLTEYAADIKAAIAY--PSTNLVNTLGEALQDSDKTQLRISETEKYAHVTFFFNGGKEEPFKG--EDRILIQSPKVATYDLQPEMSSAELTDKLVEAIESTKYDVIICNYPNGDMVGHTGSFDAAVKACEAVDTCIGRVVDA 431          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_SHEPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.647e-30
Identity = 76/224 (33.93%), Postives = 122/224 (54.46%), Query Frame = 2
Query:   29 HKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            H+  +AV+A++    + + ND+++   VI D  G  +  +VD DA++  NFRADR   + ++    DFD F+R   PKI +  + +Y   +K    Y  S  ++  T GE L    +     SET K+ HVTFF+NG +   F    E+ + I S    T+++QP+M + E+ ++   AI S  +    C  PN DMVGHTG+ +A V AC+A D  +  +++A
Sbjct:  214 HQSATAVDAIEAAYTR-DENDEFVGSTVIPDAQGN-IAKLVDNDALIFMNFRADRARQITRSFVDADFDGFERAVTPKINFVMLTEYAANIKAAIAYPSS--DLVNTLGETLQDRDLTQLRISETEKYAHVTFFFNGGKEEPFKG--EDRILIQSPKVATYDLQPEMSSTELTDKLVAAIESTEYDVIICNYPNGDMVGHTGNFDAAVKACEAVDTCIGRVVEA 431          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI1_METBF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=gpmI1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.647e-30
Identity = 76/201 (37.81%), Postives = 105/201 (52.24%), Query Frame = 2
Query:   89 DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDI 691
            D+++ P VI D  GK    I D D+++ FNFR DR   L  A   +DF+ F R + PK+ Y  M QYD  L LP  +   P E++   GE L   G+     +ET K+ HVTFF NG +   ++   E+   IPS    T++++P+M A E+ E     I S ++        N DMVGHTG  EA V A +A D  V  I
Sbjct:  236 DEFVKPTVITDSEGKPEAVIKDNDSIIFFNFRPDRARQLTWAFVNKDFENFPREKHPKVYYVCMAQYDETLDLPIAF--PPEELENVLGEVLSKQGLAQLRIAETEKYAHVTFFLNGGQEKCYEG--EDRCLIPSPKIATYDLKPEMSAYEVTEEVIGRIRSGKYDVIVLNFANMDMVGHTGIFEAAVKAVEAVDSCVGKI 432          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_PSEA6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=gpmI PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.763e-30
Identity = 75/206 (36.41%), Postives = 115/206 (55.83%), Query Frame = 2
Query:   86 NDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGML-QYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            ND+++ P VI D       PI DGDA+V  NFRADR   +++    +DF  F++     +    ML QY   +  P+ Y   P  +    GE+L ++G      SET KF HVTFF++G +   ++   EE + IPS    T+++QP+M + E+ ++  +AI S +F    C  PN DMVGHTG+ +A V AC+A D  +  +++A
Sbjct:  232 NDEFMQPTVIGD-----AAPIEDGDALVFMNFRADRAREISRPFVEKDFSDFEKGEHIDLSAFVMLTQYAESIDAPAAY--PPVALVNVMGEWLANHGKTQLRISETEKFAHVTFFYSGGKEDLYEG--EERILIPSPKVATYDLQPEMNSTELTDKLVEAIESGKFDAIICNYPNGDMVGHTGNFDAAVKACEAVDTCIGRVVEA 428          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_SHEHH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella halifaxensis (strain HAW-EB4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.221e-30
Identity = 75/224 (33.48%), Postives = 123/224 (54.91%), Query Frame = 2
Query:   29 HKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            H+  SAVE ++    + + ND+++    I D  G  +  + D DA++  NFRADR   + ++    DFD F R   PKI +  + +Y  ++K    Y  S  ++  T GE L +  +     SET K+ HVTFF+NG +   F    E+ + + S    T+++QP+M ++E+ ++  +AI S ++    C  PN DMVGHTG+ +A V AC+A D  +  I++A
Sbjct:  214 HQATSAVEGIEAAYTR-DENDEFVGSTAIPDAQGNII-KLEDNDALIFMNFRADRARQITRSFINADFDGFKRAVTPKINFVMLTEYAADIKAAIAYPSS--DLVNTLGETLQNRDLTQLRISETEKYAHVTFFFNGGKEEPFKG--EDRILVQSPKVATYDLQPEMSSVELTDKLVEAIESTQYDVIICNYPNGDMVGHTGNFDAAVKACEAVDSCIGRIVEA 431          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_PSEPF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas fluorescens (strain Pf0-1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.061e-29
Identity = 71/185 (38.38%), Postives = 106/185 (57.30%), Query Frame = 2
Query:  146 IVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            + DGDAVV  NFRADR   L++    + F +F+R R PK++Y G+ QY   +  P+ +  +P  ++   G+YL  NG      +ET K+ HVTFF++G R   F    EE + IPS    T+++QP+M A E+ +R  +AI ++R+        N DMVGH+G  EA V A +  D  V  I++A
Sbjct:  247 VEDGDAVVFMNFRADRARELSRVFVEDGFKEFERARQPKVQYVGLTQYAESIPAPAAF--APGSLENVLGDYLAKNGKTQLRIAETEKYAHVTFFFSGGREEPFPG--EERILIPSPKVATYDLQPEMSAPEVTDRIVEAIENQRYDVIVVNYANGDMVGHSGVFEAAVKAVECLDTCVGRIVEA 427          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_MYXXD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Myxococcus xanthus (strain DK 1622) GN=gpmI PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.061e-29
Identity = 76/198 (38.38%), Postives = 107/198 (54.04%), Query Frame = 2
Query:   89 DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAV 682
            D+++ P V+   +G  VG I DGDAV+ FNFRADR   L +AL + +F +FDR      RY  M QYD   KLP+  L  P +      E L   G+R F  +ET K+ HVTFF+NG R   +       V  P D   T++++P+M A E+     K + S ++        N DMVGH+G ++A + A KA DE +
Sbjct:  231 DEFVKPTVLAAGDGTPVGRIQDGDAVIFFNFRADRARELTQALAFPEFKEFDRGGLRLGRYVCMTQYDETFKLPA--LFEPDQPQDIFPELLSRQGLRQFRTAETEKYAHVTFFFNGGREVVYAGEDRHLVPSPRDVK-TYDLKPEMSAYEVTAELVKRLDSGKYDFALVNFANPDMVGHSGRLDAAMKAVKAVDECL 425          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_BACLD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=gpmI PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.386e-29
Identity = 77/224 (34.38%), Postives = 121/224 (54.02%), Query Frame = 2
Query:   32 KFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRV-RFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            K+++ ++ VK   E     D+++ P VI  ENG+ V  I D DAV+ +NFR DR + ++     +DF  FDR  + PK  +   L +  E  +  +    P  +D T GE L  NG++    +ET K+ HVTFF +G R   F    EE + I S    T++++P+M A E+ +   K I + + +       N DMVGH+G +E TV A +A DE + +++DA
Sbjct:  212 KYQNPLDVVKDSYEN-GIYDEFVIPSVITKENGEPVATIKDNDAVIFYNFRPDRAIQISNTFTNDDFRDFDRGDKHPKNLHFVCLTHFSET-VDGYVAFKPVNLDNTVGEVLSQNGLKQLRIAETEKYPHVTFFMSGGREEKFPG--EERILIDSPKVATYDLKPEMSAYEVKDALVKEIEAEKHNAIILNFANPDMVGHSGKVEPTVKAIEAVDECLGEVVDA 431          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=gpmI PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.364e-29
Identity = 77/206 (37.38%), Postives = 113/206 (54.85%), Query Frame = 2
Query:   86 NDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRY-AGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            +D+++PP +I  E+      I DGDAV+ FNFRADR   L        F  F+R   PK+ Y   M QYD  L   + +   P  ++ T GE L  +G+     +ET K+ HVTFF+NG     F +  EE + +PS    T+++QP+M A E+ +    AI S+ +H   C   N+DMVGHTG+ EATV A +  D+ ++ +  A
Sbjct:  231 SDEFVPPTLIGKEHS-----IQDGDAVLFFNFRADRARQLTSTFLDPSFKGFERKTLPKLSYFVSMTQYDKNLLTTTAF--PPVPLNNTLGEVLSSHGLSQLRIAETEKYAHVTFFFNGGCESVFTN--EERIMVPSPQVATYDLQPEMSAHELTKTLIAAINSQDYHVIICNYANADMVGHTGNFEATVQAIECLDQCMQQVWQA 427          
BLAST of FC920459 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila (strain Lens) GN=gpmI PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.087e-29
Identity = 77/206 (37.38%), Postives = 113/206 (54.85%), Query Frame = 2
Query:   86 NDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRY-AGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQGTCYLPNSDMVGHTGDIEATVVACKAADEAVKDIIDA 700
            +D+++PP +I  E+      I DGDAV+ FNFRADR   L        F  F+R   PK+ Y   M QYD  L   + +   P  ++ T GE L  +G+     +ET K+ HVTFF+NG     F +  EE + +PS    T+++QP+M A E+ +    AI S+ +H   C   N+DMVGHTG+ EATV A +  D+ ++ +  A
Sbjct:  231 SDEFVPPTLIGKEHS-----IQDGDAVLFFNFRADRARQLTSTFLDPSFKGFERKTLPKLSYFVSMTQYDKNLFTTTAF--PPVPLNNTLGEVLSSHGLSQLRIAETEKYAHVTFFFNGGCESVFTN--EERIMVPSPQVATYDLQPEMSAHELTKTLIAAINSQDYHVIICNYANADMVGHTGNFEATVQAIECLDQCMQQVWQA 427          
The following BLAST results are available for this feature:
BLAST of FC920459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_SHESH3.647e-3033.482,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEPA3.647e-3033.932,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI1_METBF3.647e-3037.812,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEA64.763e-3036.412,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEHH6.221e-3033.482,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEPF1.061e-2938.382,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYXXD1.061e-2938.382,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACLD1.386e-2934.382,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPH2.364e-2937.382,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPL3.087e-2937.382,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC32008F09EF RVDevelop1 Citrus clementina cDNA clone C32008F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920459 ID=FC920459; Name=FC920459; organism=Citrus clementina; type=EST; length=701bp
GGGATGCCCAAGTTCTTGGAGACACTCACACAAGTTTAAGAGCGCCGTTG
AAGCTGTCAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTA
CCTCCATTTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGT
AGATGGTGATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTA
TGCTTGCTAAGGCCCTTGAATATGAAGATTTTGACAAATTTGATCGAGTT
CGGTTCCCTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTT
GAAACTTCCCAGTCATTACCTTGTGTCTCCTCCAGAGATAGACAGAACAT
CTGGTGAATATTTAGTGCATAATGGTGTCCGTACTTTTGCTTGCAGTGAG
ACTGTCAAGTTTGGACATGTCACTTTCTTCTGGAATGGAAACCGCTCTGG
GTATTTCGACTCGAATTTGGAGGAATATGTGGAAATTCCTAGTGATTCTG
GAATTACTTTCAATGTACAGCCCAAGATGAAGGCTTTGGAGATTGCTGAG
AGGGCAAAGAAGGCCATCCTTAGTCGCAGGTTCCACCAGGGTACGTGTTA
CCTACCAAATAGTGACATGGTGGGGCACACGGGAGATATTGAGGCAACAG
TGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAAGATATCATTGATGCA
A
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