FC920462

Overview
NameFC920462
Unique NameFC920462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJB (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. GN=clpP2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.676e-19
Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = 3
Query:  264 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            D+++ L R+R+IF+G  +D++ +N I+A MLYL+S D  K +Y+YIN PGG V   +AIYDTMQ ++  V T C+G A               R A+P +RI +  P
Sbjct:   17 DIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFLLAGGTKGKRIALPHARIMIHQP 123          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJA (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.676e-19
Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = 3
Query:  264 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            D+++ L R+R+IF+G  +D++ +N I+A MLYL+S D  K +Y+YIN PGG V   +AIYDTMQ ++  V T C+G A               R A+P +RI +  P
Sbjct:   17 DIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFLLAGGAKGKRIALPHARIMIHQP 123          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_SYNAS (ATP-dependent Clp protease proteolytic subunit OS=Syntrophus aciditrophicus (strain SB) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.003e-18
Identity = 44/107 (41.12%), Postives = 67/107 (62.62%), Query Frame = 3
Query:  264 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            D+++ L ++R+IF+G  ID+E +N I+A +L+L+S D  K ++ Y+N PGG ++  +AIYDTM+ +K PV T CVG A               RSA+P SRI +  P
Sbjct:   19 DIYSRLLKDRIIFLGTPIDDEVANLIIAQLLFLESEDPDKEIFFYLNTPGGHISSGMAIYDTMRYIKPPVATVCVGQAASMGALLLAAGEQGKRSALPHSRILIHQP 125          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_NATTJ (ATP-dependent Clp protease proteolytic subunit OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.003e-18
Identity = 51/124 (41.13%), Postives = 74/124 (59.68%), Query Frame = 3
Query:  216 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            P V+ +T  GE S+   D+++ L ++R+IFIG  I+++ +N ++A ML+L+S D  K +++YIN PGG V   LAIYDTMQ ++S V T CVG A               R  +P SRI L  P
Sbjct:    5 PMVIEQTNRGERSY---DIYSRLLKDRIIFIGTGINDDIANSVIAQMLFLESEDPDKDIHLYINSPGGHVHAGLAIYDTMQYIRSDVSTICVGMAASMGAVLLAAGNEGKRFCLPNSRIMLHQP 125          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP1_MYXXD (ATP-dependent Clp protease proteolytic subunit 1 OS=Myxococcus xanthus (strain DK 1622) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.003e-18
Identity = 53/129 (41.09%), Postives = 77/129 (59.69%), Query Frame = 3
Query:  201 MPIGTPKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MP+  P V+ +T  GE S+   D+++ L ++R++ +G  ID++ +N I+A +L+L+S D  K + +YIN PGG VT  LAIYDTMQ +K PV T CVG A               R A+P SRI +  P
Sbjct:    4 MPV--PYVIEQTHRGERSY---DIYSRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLYINSPGGSVTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIHQP 127          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_CUSGR (ATP-dependent Clp protease proteolytic subunit OS=Cuscuta gronovii GN=clpP PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.309e-18
Identity = 44/128 (34.38%), Postives = 67/128 (52.34%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG P+V +    +    W+D++N LYRER +F+   I+ +  NQ+    +YL   DD K ++ ++N PGG +   LAIYD+MQ ++    T CVG A               R A P +R+ +  P
Sbjct:    1 MPIGVPRVRFLYDEDTGQVWIDIYNRLYRERCLFLTHTINTKIGNQLAGLFIYLGIQDDPKDIFFFLNSPGGGIISGLAIYDSMQVVRPDTQTICVGLAASMACFLLVGGTITKRLAFPHARVMMHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP2_RHOBA (ATP-dependent Clp protease proteolytic subunit 2 OS=Rhodopirellula baltica GN=clpP2 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.309e-18
Identity = 42/107 (39.25%), Postives = 66/107 (61.68%), Query Frame = 3
Query:  264 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            D+++ L ++R+IF+GQ +D++ SN ++A ML+L + D  K ++MYIN PGG +T  +AIYDTMQ +   V T+C+G A               R A+P +RI +  P
Sbjct:   19 DIYSRLLKDRIIFLGQQVDDQISNALVAQMLFLQADDPKKDIHMYINSPGGSITAGMAIYDTMQFVSCDVATYCIGQAASMGAVLLTAGAKGKRFALPNARIMIHQP 125          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_PELCD (ATP-dependent Clp protease proteolytic subunit OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=clpP PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.710e-18
Identity = 49/123 (39.84%), Postives = 75/123 (60.98%), Query Frame = 3
Query:  216 PKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            P V+ +T G G   + D+++ L ++R+IF+G  +D++ +N I+A ML+L+S D  K +++YIN PGG VT  +AIYDTMQ ++ PV T CVG A               R A+P +RI +  P
Sbjct:    5 PMVVEQT-GRGERAY-DIFSRLLKDRIIFLGGAVDDQVANLIIAQMLFLESEDPEKEIFLYINSPGGVVTAGMAIYDTMQYVRCPVSTLCVGQAASMGAVLLAAGGEGKRFALPHARIMIHQP 125          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_CHLPD (ATP-dependent Clp protease proteolytic subunit OS=Chlorobium phaeobacteroides (strain DSM 266) GN=clpP PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.233e-18
Identity = 53/147 (36.05%), Postives = 80/147 (54.42%), Query Frame = 3
Query:  144 KSLYSGIRNDKPIRGRIAMMPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            + LYSG   ++ I G +  M I        T G G   + D+++ L RER+IF+G  IDE  +  I+A +++L+S D  + +Y+Y+N PGG V+  L IYDTMQ ++  V T CVG A               R+++P SRI +  P
Sbjct:   13 RKLYSGAI-EQGITGSLVPMVI-------ETSGRGERAF-DIFSRLLRERIIFLGSGIDEHVAGLIMAQLIFLESEDPERDIYIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGTKGKRASLPHSRIMIHQP 150          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_CHLTE (ATP-dependent Clp protease proteolytic subunit OS=Chlorobium tepidum GN=clpP PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.810e-18
Identity = 53/147 (36.05%), Postives = 79/147 (53.74%), Query Frame = 3
Query:  144 KSLYSGIRNDKPIRGRIAMMPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            K LYSG   +  I  ++  M I        T G G   + D+++ L RER+IF+G  IDE  +  I+A +++L+S D  + +Y+YIN PGG V+  L IYDTMQ ++  + T CVG A               R+++P SRI +  P
Sbjct:   13 KKLYSGAIENS-INSQLVPMVI-------ETSGRGERAF-DIFSRLLRERIIFLGSPIDEHVAGLIIAQLIFLESEDPERDIYIYINSPGGSVSAGLGIYDTMQYIRPDISTVCVGMAASMGAFLLASGTSGKRASLPHSRIMIHQP 150          
The following BLAST results are available for this feature:
BLAST of FC920462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP2_SYNJB7.676e-1941.12ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_SYNJA7.676e-1941.12ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_SYNAS1.003e-1841.12ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NATTJ1.003e-1841.13ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_MYXXD1.003e-1841.09ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_CUSGR1.309e-1834.38ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_RHOBA1.309e-1839.25ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_PELCD1.710e-1839.84ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CHLPD2.233e-1836.05ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CHLTE3.810e-1836.05ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32008G01EF RVDevelop1 Citrus clementina cDNA clone C32008G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920462 ID=FC920462; Name=FC920462; organism=Citrus clementina; type=EST; length=585bp
TGTCCGTTTCTCTTAACGCAAACTTATATCAACCTTCTCTGAGCTGTAAC
CTCAAGCTTTATTCTGGATTAAAGATTCAATCACCAAGTGTTTTTGGAAC
TGGGAAACCTAATTTGAGTGCTGAATTCTATGGCAGAGTTCATAAGAGCC
TCTACTCCGGGATTCGTAATGATAAACCAATAAGGGGACGAATTGCAATG
ATGCCGATTGGGACACCAAAAGTGCTTTATAGGACGCCTGGTGAGGGATC
TTGGCAATGGGTTGATCTATGGAATGCCCTATATCGAGAACGTGTTATTT
TCATTGGGCAAAATATAGATGAAGAATTTAGCAACCAAATATTGGCAACG
ATGTTGTATCTAGACAGTGTTGATGATTCCAAAAGGGTTTATATGTACAT
CAACGGTCCTGGTGGGGATGTTACTCCCACCTTGGCAATTTACGACACTA
TGCAGAGCTTGAAGAGTCCTGTTGGCACTCACTGTGTGGGCTTTGCCTAT
CATTTAGCAGGGTTTCTTCTAGCAGGTGGAGAATAGGGGAATCGGTCTGC
AATGCCTCTTTCGAGAATTGCTTTAGACTCTCCAG
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