FC920462

Overview
NameFC920462
Unique NameFC920462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP2_MYXXA (ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus xanthus GN=clpP2 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.810e-18
Identity = 53/129 (41.09%), Postives = 76/129 (58.91%), Query Frame = 3
Query:  201 MPIGTPKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MP+  P V+ +T  GE S+   D+ + L ++R++ +G  ID++ +N I+A +L+L+S D  K + +YIN PGG VT  LAIYDTMQ +K PV T CVG A               R A+P SRI +  P
Sbjct:    4 MPV--PYVIEQTHRGERSY---DIISRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLYINSPGGSVTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIHQP 127          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_AQUAE (ATP-dependent Clp protease proteolytic subunit OS=Aquifex aeolicus GN=clpP PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.975e-18
Identity = 50/124 (40.32%), Postives = 74/124 (59.68%), Query Frame = 3
Query:  216 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            P V+ +TP GE ++   D+++ L ++R++ +G  ID+  +N I+A +L+L+S D  K +Y+YIN PGG VT  LAIYDTMQ +K  V T C+G A               R A+P SRI +  P
Sbjct:   12 PIVIEQTPRGERAY---DIYSRLLQDRIVLLGSPIDDHVANLIVAQLLFLESQDPDKDIYLYINSPGGSVTAGLAIYDTMQYIKPDVVTICMGQAASMGAILLAAGAPGKRYALPHSRIMIHQP 132          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_PELLD (ATP-dependent Clp protease proteolytic subunit OS=Pelodictyon luteolum (strain DSM 273) GN=clpP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.498e-18
Identity = 45/121 (37.19%), Postives = 70/121 (57.85%), Query Frame = 3
Query:  222 VLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            ++  T G G   + D+++ L RER+IF+G  IDE  +  I+A +++L+S D  + +Y+Y+N PGG V+  L IYDTMQ ++  V T CVG A               R+++P SRI +  P
Sbjct:   31 MVIETSGRGERAF-DIFSRLLRERIIFLGSGIDEHVAGLIMAQLIFLESEDPERDIYIYVNSPGGSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGAKGKRASLPHSRIMIHQP 150          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_DESPS (ATP-dependent Clp protease proteolytic subunit OS=Desulfotalea psychrophila GN=clpP PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 6.498e-18
Identity = 48/124 (38.71%), Postives = 74/124 (59.68%), Query Frame = 3
Query:  216 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            P V+ +TP GE S+   D+++ L +ER+IF+G  ++++ +N I+A +L+L++ D  K +  YIN PGG VT  +AIYDTMQ +K  + T C+G A               R A+P SRI +  P
Sbjct:    5 PMVVEQTPRGERSY---DIYSRLLKERIIFLGSGVNDDVANVIVAQLLFLEAEDPEKDITFYINSPGGSVTAGMAIYDTMQYIKCDIATLCMGQAASMGAVLLAAGTAGKRYALPNSRIMIHQP 125          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_CHLCH (ATP-dependent Clp protease proteolytic subunit OS=Chlorobium chlorochromatii (strain CaD3) GN=clpP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.498e-18
Identity = 53/147 (36.05%), Postives = 79/147 (53.74%), Query Frame = 3
Query:  144 KSLYSGIRNDKPIRGRIAMMPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            K LYSG   ++ I   +  M I        T G G   + D+++ L RER+IF+G  IDE  +  I+A +++L+S D  + +Y+YIN PGG V+  L IYDTMQ ++  + T CVG A               R+++P SRI +  P
Sbjct:   13 KKLYSGAI-EQGISNSLVPMVI-------ETSGRGERAF-DIFSRLLRERIIFLGTGIDEHVAGLIMAQLIFLESEDPERDIYIYINSPGGSVSAGLGIYDTMQYIRPEISTVCVGMAASMGAFLLASGNKGKRASLPHSRIMIHQP 150          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_CARHZ (ATP-dependent Clp protease proteolytic subunit OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=clpP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.498e-18
Identity = 48/124 (38.71%), Postives = 73/124 (58.87%), Query Frame = 3
Query:  216 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            P V+ +T  GE S+   D+W+ L ++R IFIG  ID+  +N ++A ML+L++ D  K +++YIN PGG +T  +AIYDTMQ +K  V T C+G A               R ++P +RI +  P
Sbjct:    6 PIVIEQTSRGERSY---DIWSRLLKDRTIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHLYINSPGGVITAGMAIYDTMQYIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPYARIMIHQP 126          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_THESQ (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga sp. (strain RQ2) GN=clpP PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.487e-18
Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = 3
Query:  264 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            D+++ L ++R++F+G  ID+  +N ++A +L+L++ D  K VY+YIN PGG VT  LAIYDTMQ +K  V T CVG A               R A+P +RI +  P
Sbjct:   28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQP 134          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_THEP1 (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=clpP PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.487e-18
Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = 3
Query:  264 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            D+++ L ++R++F+G  ID+  +N ++A +L+L++ D  K VY+YIN PGG VT  LAIYDTMQ +K  V T CVG A               R A+P +RI +  P
Sbjct:   28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQP 134          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_THEMA (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga maritima GN=clpP PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.487e-18
Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = 3
Query:  264 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            D+++ L ++R++F+G  ID+  +N ++A +L+L++ D  K VY+YIN PGG VT  LAIYDTMQ +K  V T CVG A               R A+P +RI +  P
Sbjct:   28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPGGSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQP 134          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP1_PROM9 (ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus (strain MIT 9312) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.108e-17
Identity = 45/113 (39.82%), Postives = 67/113 (59.29%), Query Frame = 3
Query:  246 GSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            GS +  D+++ L RER+IF+G+ +  E +N+I+A +L+L++ D  K +YMYIN PGG V   L I+DTMQ +K  + T CVG A               RS++  SRI +  P
Sbjct:   11 GSERVFDIYSRLLRERIIFLGEQVTSETANRIVAQLLFLEAEDPDKDIYMYINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLAAGTKGKRSSLRHSRIMIHQP 123          
The following BLAST results are available for this feature:
BLAST of FC920462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP2_MYXXA3.810e-1841.09ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_AQUAE4.975e-1840.32ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PELLD6.498e-1837.19ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESPS6.498e-1838.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CHLCH6.498e-1836.05ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CARHZ6.498e-1838.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THESQ8.487e-1841.12ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEP18.487e-1841.12ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEMA8.487e-1841.12ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_PROM91.108e-1739.82ATP-dependent Clp protease proteolytic subunit 1 O... [more]

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Properties
Property NameValue
Genbank descriptionC32008G01EF RVDevelop1 Citrus clementina cDNA clone C32008G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920462 ID=FC920462; Name=FC920462; organism=Citrus clementina; type=EST; length=585bp
TGTCCGTTTCTCTTAACGCAAACTTATATCAACCTTCTCTGAGCTGTAAC
CTCAAGCTTTATTCTGGATTAAAGATTCAATCACCAAGTGTTTTTGGAAC
TGGGAAACCTAATTTGAGTGCTGAATTCTATGGCAGAGTTCATAAGAGCC
TCTACTCCGGGATTCGTAATGATAAACCAATAAGGGGACGAATTGCAATG
ATGCCGATTGGGACACCAAAAGTGCTTTATAGGACGCCTGGTGAGGGATC
TTGGCAATGGGTTGATCTATGGAATGCCCTATATCGAGAACGTGTTATTT
TCATTGGGCAAAATATAGATGAAGAATTTAGCAACCAAATATTGGCAACG
ATGTTGTATCTAGACAGTGTTGATGATTCCAAAAGGGTTTATATGTACAT
CAACGGTCCTGGTGGGGATGTTACTCCCACCTTGGCAATTTACGACACTA
TGCAGAGCTTGAAGAGTCCTGTTGGCACTCACTGTGTGGGCTTTGCCTAT
CATTTAGCAGGGTTTCTTCTAGCAGGTGGAGAATAGGGGAATCGGTCTGC
AATGCCTCTTTCGAGAATTGCTTTAGACTCTCCAG
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