FC920462

Overview
NameFC920462
Unique NameFC920462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig107 contig Ccv1_Contig107:23..607. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP2_PROM9 (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus (strain MIT 9312) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.632e-27
Identity = 61/128 (47.66%), Postives = 81/128 (63.28%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIGTP V YR PG    +WVD++  L  ER++F+GQ +++  +N ++A MLYLDS D+SK +Y+YIN PGG VT  LAIYDT++ +KS V T CVG A               R A+P SRI +  P
Sbjct:    1 MPIGTPSVPYRLPGSQYERWVDIYTRLGVERILFLGQEVNDGIANSLVAQMLYLDSDDNSKPIYLYINSPGGSVTAGLAIYDTIKYVKSDVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_PSEAK (ATP-dependent Clp protease proteolytic subunit OS=Pseudendoclonium akinetum GN=clpP PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.438e-27
Identity = 60/128 (46.88%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV YR  G    +WVDL+N LYRERV+F+ Q++D+E +NQ++  MLYL++ D SK +Y+YIN PGG VT  + ++D M  +KS V T CVG A               R A+P SRI +  P
Sbjct:    1 MPIGVPKVPYRLAGNEVAEWVDLYNRLYRERVLFLCQDLDDELANQLIGIMLYLNAEDKSKGIYVYINSPGGSVTCGVGVFDAMNYIKSDVTTICVGTAASMASFVLAGGRKGKRLALPHSRIMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_CALFG (ATP-dependent Clp protease proteolytic subunit OS=Calycanthus floridus var. glaucus GN=clpP PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.438e-27
Identity = 58/128 (45.31%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R+PGE    WVD++N L+RER++F+GQ +D E SNQ++  M+YL   DD+K +Y++IN PGG V P +AIYDTMQ +   V T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPKVPFRSPGEEDAVWVDVYNRLHRERLLFLGQEVDSEISNQLVGLMVYLTIEDDTKDLYLFINSPGGWVIPGIAIYDTMQFVSPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_BUXMI (ATP-dependent Clp protease proteolytic subunit OS=Buxus microphylla GN=clpP PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.490e-27
Identity = 57/128 (44.53%), Postives = 79/128 (61.72%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R PGE    WVD++N L+RER++F+GQ +D E SNQ++  M+YL   DD+K +Y++IN PGG V P +AIYDTMQ +   + T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPKVPFRNPGEEDAVWVDVYNRLHRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTKDLYLFINSPGGWVIPGIAIYDTMQFVPPDIHTICMGLAASMGSFLLVGGEITKRLAFPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_VITVI (ATP-dependent Clp protease proteolytic subunit OS=Vitis vinifera GN=clpP PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.864e-27
Identity = 56/128 (43.75%), Postives = 78/128 (60.94%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R PGE    W+D++N LYRER++F+GQ ++ E SNQ++  M+YL   D++K +Y +IN PGG V P +AIYDTMQ +   V T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPKVPFRNPGEDDISWIDVYNRLYRERLLFLGQEVESEISNQLIGLMIYLSIEDENKDLYFFINSPGGWVLPGIAIYDTMQFVPPEVHTICLGLAASMGSFILVGGTITKRLAFPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_SOLLC (ATP-dependent Clp protease proteolytic subunit OS=Solanum lycopersicum GN=clpP PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.864e-27
Identity = 55/128 (42.97%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG P+V++R PG+    WVD++N LYRER++F+GQ I  E SNQ++  MLYL   D++K +Y+++N PGG V P +AIYDTMQ ++  + T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPRVVFRNPGDPISSWVDIYNRLYRERLLFLGQGIGTELSNQLIGLMLYLSMEDENKDLYLFVNSPGGWVIPGIAIYDTMQFVRPDIHTICLGLAASMGSFILAGGQLTKRIAFPHARVMIHEP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_PANGI (ATP-dependent Clp protease proteolytic subunit OS=Panax ginseng GN=clpP PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.864e-27
Identity = 57/128 (44.53%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R+PGE    WVD++N LYRER++F+GQ +  E SNQ++  M+YL   DD+K +Y+++N PGG V P +AIYDTMQ ++  V T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPKVPFRSPGEEDAYWVDIYNRLYRERLLFLGQPVASEISNQLIGLMVYLSIEDDTKDLYLFMNSPGGWVLPGIAIYDTMQFVRPDVHTICMGLAASMGSFILAGGEITKRLAFPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_OSTTA (ATP-dependent Clp protease proteolytic subunit OS=Ostreococcus tauri GN=clpP PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.864e-27
Identity = 57/128 (44.53%), Postives = 81/128 (63.28%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV YR PGE + QWVDL+N LYRERV+F+G  +D+E +NQ+   MLYL + D S+ +++YIN PGG VT  L+++D M  +++ V T  +GFA              +R A+P  R+ +  P
Sbjct:    1 MPIGVPKVAYRLPGESTPQWVDLYNRLYRERVLFLGSGLDDELANQLNGIMLYLSAEDASRSLFLYINSPGGSVTAGLSVFDIMNYVQASVTTIGIGFAASMASFILAGGERGSRIALPHCRVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP2_PROMP (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.864e-27
Identity = 60/128 (46.88%), Postives = 81/128 (63.28%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIGTP V YR PG    +WVD++  L  ER++F+GQ +++  +N ++A MLYLDS D++K +Y+YIN PGG VT  LAIYDT++ +KS V T CVG A               R A+P SRI +  P
Sbjct:    1 MPIGTPSVPYRLPGSQYERWVDIYTRLGVERILFLGQEVNDGIANSLVAQMLYLDSDDNTKPIYLYINSPGGSVTAGLAIYDTIKYVKSDVVTICVGLAASMGAFLLGAGTKGKRVALPHSRIMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_PLAOC (ATP-dependent Clp protease proteolytic subunit OS=Platanus occidentalis GN=clpP PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.658e-27
Identity = 57/128 (44.53%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R+PGE    WVD++N L+RER++F+GQ +D E SNQ++  M+YL   DD++ +Y++IN PGG V P +AIYDTMQ +   V T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPKVPFRSPGEEDAIWVDVYNRLHRERLLFLGQEVDSEISNQLIGLMVYLSIEDDTRDLYLFINSPGGWVIPGIAIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQP 128          
The following BLAST results are available for this feature:
BLAST of FC920462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP2_PROM92.632e-2747.66ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_PSEAK3.438e-2746.88ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CALFG3.438e-2745.31ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BUXMI4.490e-2744.53ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_VITVI5.864e-2743.75ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SOLLC5.864e-2742.97ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PANGI5.864e-2744.53ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_OSTTA5.864e-2744.53ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_PROMP5.864e-2746.88ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_PLAOC7.658e-2744.53ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32008G01EF RVDevelop1 Citrus clementina cDNA clone C32008G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920462 ID=FC920462; Name=FC920462; organism=Citrus clementina; type=EST; length=585bp
TGTCCGTTTCTCTTAACGCAAACTTATATCAACCTTCTCTGAGCTGTAAC
CTCAAGCTTTATTCTGGATTAAAGATTCAATCACCAAGTGTTTTTGGAAC
TGGGAAACCTAATTTGAGTGCTGAATTCTATGGCAGAGTTCATAAGAGCC
TCTACTCCGGGATTCGTAATGATAAACCAATAAGGGGACGAATTGCAATG
ATGCCGATTGGGACACCAAAAGTGCTTTATAGGACGCCTGGTGAGGGATC
TTGGCAATGGGTTGATCTATGGAATGCCCTATATCGAGAACGTGTTATTT
TCATTGGGCAAAATATAGATGAAGAATTTAGCAACCAAATATTGGCAACG
ATGTTGTATCTAGACAGTGTTGATGATTCCAAAAGGGTTTATATGTACAT
CAACGGTCCTGGTGGGGATGTTACTCCCACCTTGGCAATTTACGACACTA
TGCAGAGCTTGAAGAGTCCTGTTGGCACTCACTGTGTGGGCTTTGCCTAT
CATTTAGCAGGGTTTCTTCTAGCAGGTGGAGAATAGGGGAATCGGTCTGC
AATGCCTCTTTCGAGAATTGCTTTAGACTCTCCAG
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