FC920462

Overview
NameFC920462
Unique NameFC920462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig107 contig Ccv1_Contig107:23..607. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_HUPLU (ATP-dependent Clp protease proteolytic subunit OS=Huperzia lucidula GN=clpP PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.218e-25
Identity = 51/128 (39.84%), Postives = 79/128 (61.72%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R PG+    W+D++N L+RER++F+GQ +D+E +NQ++  M+Y +  DDS+ +Y+Y+N PGG V   ++IYD MQ +   V T C+G A               R A+P +R+ +  P
Sbjct:    1 MPIGVPKVPFRLPGDEDAVWIDVYNRLFRERLLFLGQQVDDELANQLICIMIYPNGEDDSRDMYLYVNSPGGAVFAGISIYDAMQFVVPDVQTICIGLAASMGSFVLAGGEITKRIALPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_ANGEV (ATP-dependent Clp protease proteolytic subunit OS=Angiopteris evecta GN=clpP PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.218e-25
Identity = 54/128 (42.19%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R PGE    WVD+ N LYRER++F+GQ +D+E +NQ++  M+YL+  D+++ +Y+YIN PGG V P +++YD MQ +   V T C+G A               R A+P +R+ +  P
Sbjct:    1 MPIGVPKVPFRLPGEEDAVWVDV-NRLYRERLLFLGQQVDDEIANQLIGIMMYLNGEDETQDMYLYINSPGGAVLPGISVYDAMQFVVPDVHTICMGLAASMGSSILTGGEITKRIALPHARVMIHQP 127          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_CHLSC (ATP-dependent Clp protease proteolytic subunit OS=Chloranthus spicatus GN=clpP PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.202e-25
Identity = 58/128 (45.31%), Postives = 78/128 (60.94%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R+PGE    WVD+ N L+RER++F+GQ +D E SNQ++  M+YL   DD++ +Y++IN PGG V P L IYDTMQ +   V T C+G A               R A P +RI +  P
Sbjct:    1 MPIGVPKVPFRSPGEEDAVWVDV-NRLHRERLLFLGQEVDSEISNQLVGLMVYLSIEDDTRDLYLFINSPGGWVIPGLTIYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARIMIHQP 127          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_CHLAT (ATP-dependent Clp protease proteolytic subunit OS=Chlorokybus atmophyticus GN=clpP PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 4.202e-25
Identity = 52/128 (40.62%), Postives = 78/128 (60.94%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV YR PGE    +VD++N LYRER++F+G+++D+E +NQ++  M++L+S DD+K ++ YIN PGG +   L +YD +Q +   V T C+G A               R   P +R+ L  P
Sbjct:    1 MPIGIPKVAYRIPGESVSTYVDVYNRLYRERILFLGEDLDDEVANQLIGVMVFLNSEDDTKGIFFYINSPGGSMNSGLGVYDMIQHINVDVTTICMGLAASMASFILAGGTPGQRLMFPHARVMLHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_PHYPA (ATP-dependent Clp protease proteolytic subunit OS=Physcomitrella patens GN=clpP PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.488e-25
Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWN-ALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R PGE    W+D++N  LYRER++F+GQ++D+E +NQ++  M+YL+  D++K +Y+YIN PGG V   +++YD MQ +   V T C+G A               R A+P +R+ +  P
Sbjct:    1 MPIGVPKVPFRLPGEEDAVWIDVYNNRLYRERLLFLGQHVDDEIANQLIGIMMYLNGEDENKDMYLYINSPGGAVLAGISVYDAMQFVVPDVHTICMGLAASMGSFILAGGEITKRIALPHARVMIHQP 129          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_MESVI (ATP-dependent Clp protease proteolytic subunit OS=Mesostigma viride GN=clpP PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.488e-25
Identity = 52/128 (40.62%), Postives = 78/128 (60.94%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV YR PGE    +VD++N LYRER++F+G+++D+E +NQ++  M++L+S DD+K ++ YIN PGG +   L +YD +Q +   V T C+G A               R   P +R+ L  P
Sbjct:    1 MPIGIPKVAYRIPGEAVSTYVDVYNRLYRERILFLGEDLDDEVANQLIGVMVFLNSEDDTKGIFFYINSPGGSMNAGLGVYDMIQHVNVDVTTICMGLAASMASFILAGGTPGQRLMFPHARVMLHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_NEPOL (ATP-dependent Clp protease proteolytic subunit OS=Nephroselmis olivacea GN=clpP PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.168e-25
Identity = 55/128 (42.97%), Postives = 76/128 (59.38%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MP+G PKV YR PGE + QWVDL+N LYR+R++F+GQ + +E SNQ+   M+YL + D S  ++MYIN PGG VT  L ++D    +   V T CVG A               R A+P +R+ +  P
Sbjct:    1 MPVGVPKVPYRLPGESAPQWVDLYNRLYRQRLLFMGQELGDELSNQLCGIMIYLFAEDPSIPLFMYINSPGGSVTSGLGVFDIATVMMQDVTTICVGIAASMASLVLSGGSTGQRLALPHARMMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_ACOGR (ATP-dependent Clp protease proteolytic subunit OS=Acorus gramineus GN=clpP PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.362e-25
Identity = 53/128 (41.41%), Postives = 77/128 (60.16%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKVL+ +PGE    WVD++N L+RER++F+GQ +D E SNQ++  M+YL   D ++  +++IN PGG V P + +YDTMQ +   V T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPKVLFGSPGEEDAAWVDIYNRLHRERLLFLGQELDSEISNQLVGLMVYLSIEDKTRDFFLFINSPGGWVIPGIGLYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_ACOCL (ATP-dependent Clp protease proteolytic subunit OS=Acorus calamus GN=clpP PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.362e-25
Identity = 53/128 (41.41%), Postives = 77/128 (60.16%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R+PGE    WVD++N L+RER++F+GQ +D E SNQ++  M+YL   D ++  +++IN PGG V P + +YDTMQ +   V T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPKVPFRSPGEEDAAWVDIYNRLHRERLLFLGQELDSEISNQLVGLMVYLSIEDKTRDFFLFINSPGGWVIPGIGLYDTMQFVPPDVHTICMGLAASMGSFILVGGEITKRLAFPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_DIOEL (ATP-dependent Clp protease proteolytic subunit OS=Dioscorea elephantipes GN=clpP PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.223e-24
Identity = 57/128 (44.53%), Postives = 78/128 (60.94%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R+PGE    WVD+ N L+RER++F+GQ +D E SNQ++  M+YL   D +K +Y++IN PGG V P +AIYDTMQ +   V T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPKVPFRSPGEEDAVWVDV-NRLHRERLLFLGQEVDNEVSNQLVGLMVYLSIEDATKDLYLFINSPGGWVIPGMAIYDTMQFVSPDVHTICMGLAASMGSLILVGGEITKRLAFPHARVMIHQP 127          
The following BLAST results are available for this feature:
BLAST of FC920462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_HUPLU3.218e-2539.84ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ANGEV3.218e-2542.19ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CHLSC4.202e-2545.31ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CHLAT4.202e-2540.63ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PHYPA5.488e-2541.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_MESVI5.488e-2540.63ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NEPOL7.168e-2542.97ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ACOGR9.362e-2541.41ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ACOCL9.362e-2541.41ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DIOEL1.223e-2444.53ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32008G01EF RVDevelop1 Citrus clementina cDNA clone C32008G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920462 ID=FC920462; Name=FC920462; organism=Citrus clementina; type=EST; length=585bp
TGTCCGTTTCTCTTAACGCAAACTTATATCAACCTTCTCTGAGCTGTAAC
CTCAAGCTTTATTCTGGATTAAAGATTCAATCACCAAGTGTTTTTGGAAC
TGGGAAACCTAATTTGAGTGCTGAATTCTATGGCAGAGTTCATAAGAGCC
TCTACTCCGGGATTCGTAATGATAAACCAATAAGGGGACGAATTGCAATG
ATGCCGATTGGGACACCAAAAGTGCTTTATAGGACGCCTGGTGAGGGATC
TTGGCAATGGGTTGATCTATGGAATGCCCTATATCGAGAACGTGTTATTT
TCATTGGGCAAAATATAGATGAAGAATTTAGCAACCAAATATTGGCAACG
ATGTTGTATCTAGACAGTGTTGATGATTCCAAAAGGGTTTATATGTACAT
CAACGGTCCTGGTGGGGATGTTACTCCCACCTTGGCAATTTACGACACTA
TGCAGAGCTTGAAGAGTCCTGTTGGCACTCACTGTGTGGGCTTTGCCTAT
CATTTAGCAGGGTTTCTTCTAGCAGGTGGAGAATAGGGGAATCGGTCTGC
AATGCCTCTTTCGAGAATTGCTTTAGACTCTCCAG
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