FC920462

Overview
NameFC920462
Unique NameFC920462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig107 contig Ccv1_Contig107:23..607. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_PINTH (ATP-dependent Clp protease proteolytic subunit OS=Pinus thunbergii GN=clpP PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.557e-24
Identity = 51/128 (39.84%), Postives = 78/128 (60.94%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MP+G PKV +R PG+    WVDL+N LYRER++F+ Q+I+ E +NQ++  M+YL + D +K ++ +IN PGG V P + ++D MQ++   V T C+G A               R A+P +RI +  P
Sbjct:    1 MPVGVPKVPFRAPGDEDATWVDLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDSNKDIFSFINCPGGSVIPGVGLFDMMQAIVPDVHTICMGVAASMGSFILIGGEMPKRIALPHARIMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_PHAVU (ATP-dependent Clp protease proteolytic subunit OS=Phaseolus vulgaris GN=clpP PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.068e-24
Identity = 51/100 (51.00%), Postives = 73/100 (73.00%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVD-LWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFA 497
            MPIG P+V +RTPG+    WVD L N LYRER++F+GQ++D E SNQ+++ M+YL    ++K +Y++IN PGG V P +A+YDTMQ ++  V T C+G A
Sbjct:    1 MPIGVPRVPFRTPGDRDASWVDILINRLYRERLLFLGQDVDSEISNQLISLMIYLSIEKENKDLYLFINSPGGWVIPGIALYDTMQFVQPDVQTVCLGLA 100          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_RANMC (ATP-dependent Clp protease proteolytic subunit OS=Ranunculus macranthus GN=clpP PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.925e-24
Identity = 54/128 (42.19%), Postives = 78/128 (60.94%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV +R PGE    WVD++  L+RER++F+GQ +D E SNQ++  M+YL   D+++ ++++IN PGG V P +AIYDTMQ +   V T C+G A               R A P +R+ +  P
Sbjct:    1 MPIGVPKVPFRIPGEEDAVWVDVYR-LHRERLLFLGQGVDSEISNQLIGLMVYLSLEDETRDLFLFINSPGGWVVPGVAIYDTMQFVPPDVHTICMGLAASMGSFLLVGGEITKRIAFPHARVMIHQP 127          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_PINCO (ATP-dependent Clp protease proteolytic subunit OS=Pinus contorta GN=clpP PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.925e-24
Identity = 50/128 (39.06%), Postives = 77/128 (60.16%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MP+G PKV +R PG+    WVDL+N LYRER++F+ Q+I+ E +NQ++  M+YL + D +K ++ +IN PGG V P + +Y  MQ++   V T C+G A               R A+P +R+ +  P
Sbjct:    1 MPVGVPKVPFRAPGDEDATWVDLYNRLYRERLLFLAQDINNEIANQLMGLMVYLSAEDANKEIFSFINCPGGSVIPGVGLYRMMQAIVPDVNTICMGVAASMGSFILIGGEMPKRIALPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_PINKO (ATP-dependent Clp protease proteolytic subunit OS=Pinus koraiensis GN=clpP PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.766e-23
Identity = 50/128 (39.06%), Postives = 77/128 (60.16%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MP+G PKV +R PG+    WVDL+N LYRER++F+ Q+I+ E +NQ++  M+YL + D +K ++ +IN PGG V P + ++D MQ +   V T C+G A               R A+P +R+ +  P
Sbjct:    1 MPVGVPKVPFRAPGDEDATWVDLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDANKDIFSFINCPGGSVIPGVGLFDMMQVIVPNVHTICMGVAASMGSFILIGGEITKRMALPHARVMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_LEPTE (ATP-dependent Clp protease proteolytic subunit OS=Leptosira terrestris GN=clpP PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.933e-23
Identity = 53/128 (41.41%), Postives = 75/128 (58.59%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MP+G PKV Y  P E    W+DL++ LY+ER+I I  ++++E  NQI++ ++YL + DDSK  ++YIN PGG VT  +AIYD M+   +PV T  VG +               R A P SRI +  P
Sbjct:    1 MPVGVPKVFYALPDEEEADWIDLYHCLYQERLIVICGDLNDEAVNQIVSVLIYLSTRDDSKEFFIYINSPGGSVTSGIAIYDAMRFNNTPVNTIAVGISASMASFILAGGDIGKRLAFPHSRIMIHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_BIGNA (ATP-dependent Clp protease proteolytic subunit OS=Bigelowiella natans GN=clpP PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.137e-23
Identity = 51/128 (39.84%), Postives = 77/128 (60.16%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKVL++   + + QWVD++  LY++R+IF+ Q +D++FSNQI++ +L+LDS    + +Y YIN  GG V   ++IYDTM  + S + T C+G A               R  +P SR+ L  P
Sbjct:    1 MPIGIPKVLFKESTDTTPQWVDIYTRLYKDRIIFLFQLLDDDFSNQIISMLLHLDSESKEELIYFYINSVGGSVLSGISIYDTMNFINSEIVTLCIGIASSISSLILANGKRTKRFILPHSRVLLHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_SORBI (ATP-dependent Clp protease proteolytic subunit OS=Sorghum bicolor GN=clpP PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.762e-23
Identity = 53/128 (41.41%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV YR PG+    WVDL+N +YRER +F+GQ I  E +N I   M+YL   D +  ++++IN PGG +   +AI+DTMQ++   + T C+G A               R A P +RI L  P
Sbjct:    1 MPIGVPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGNSDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_SACOF (ATP-dependent Clp protease proteolytic subunit OS=Saccharum officinarum GN=clpP PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.762e-23
Identity = 53/128 (41.41%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV YR PG+    WVDL+N +YRER +F+GQ I  E +N I   M+YL   D +  ++++IN PGG +   +AI+DTMQ++   + T C+G A               R A P +RI L  P
Sbjct:    1 MPIGVPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGNSDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQP 128          
BLAST of FC920462 vs. ExPASy Swiss-Prot
Match: CLPP_SACHY (ATP-dependent Clp protease proteolytic subunit OS=Saccharum hybrid GN=clpP PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.762e-23
Identity = 53/128 (41.41%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  201 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHXXXXXXXXXXXXNRSAMPLSRIALDSP 584
            MPIG PKV YR PG+    WVDL+N +YRER +F+GQ I  E +N I   M+YL   D +  ++++IN PGG +   +AI+DTMQ++   + T C+G A               R A P +RI L  P
Sbjct:    1 MPIGVPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGNSDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQP 128          
The following BLAST results are available for this feature:
BLAST of FC920462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_PINTH3.557e-2439.84ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PHAVU6.068e-2451.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_RANMC7.925e-2442.19ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PINCO7.925e-2439.06ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PINKO1.766e-2339.06ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LEPTE3.933e-2341.41ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BIGNA5.137e-2339.84ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SORBI8.762e-2341.41ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SACOF8.762e-2341.41ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SACHY8.762e-2341.41ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32008G01EF RVDevelop1 Citrus clementina cDNA clone C32008G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920462 ID=FC920462; Name=FC920462; organism=Citrus clementina; type=EST; length=585bp
TGTCCGTTTCTCTTAACGCAAACTTATATCAACCTTCTCTGAGCTGTAAC
CTCAAGCTTTATTCTGGATTAAAGATTCAATCACCAAGTGTTTTTGGAAC
TGGGAAACCTAATTTGAGTGCTGAATTCTATGGCAGAGTTCATAAGAGCC
TCTACTCCGGGATTCGTAATGATAAACCAATAAGGGGACGAATTGCAATG
ATGCCGATTGGGACACCAAAAGTGCTTTATAGGACGCCTGGTGAGGGATC
TTGGCAATGGGTTGATCTATGGAATGCCCTATATCGAGAACGTGTTATTT
TCATTGGGCAAAATATAGATGAAGAATTTAGCAACCAAATATTGGCAACG
ATGTTGTATCTAGACAGTGTTGATGATTCCAAAAGGGTTTATATGTACAT
CAACGGTCCTGGTGGGGATGTTACTCCCACCTTGGCAATTTACGACACTA
TGCAGAGCTTGAAGAGTCCTGTTGGCACTCACTGTGTGGGCTTTGCCTAT
CATTTAGCAGGGTTTCTTCTAGCAGGTGGAGAATAGGGGAATCGGTCTGC
AATGCCTCTTTCGAGAATTGCTTTAGACTCTCCAG
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