FC920465
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920465 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.562e-14 Identity = 55/181 (30.39%), Postives = 85/181 (46.96%), Query Frame = 2 Query: 65 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQS-------IWYGPDRPKYLGPFSEQTPSYLTGEFPGDCGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 586 A+S I AF+ ++ R + GGR +TP + + PDRP + P +L G PGD G+D GL++DPE+ N++ E++H RWAMLGA G PE+L+K G+ W+ AG Q +Y + ++ ++VL+G+ EG R Sbjct: 6 ASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ-------EYFTDTT--------TLFIVELVLIGWAEGRR 168
BLAST of FC920465 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14 Identity = 46/124 (37.10%), Postives = 64/124 (51.61%), Query Frame = 2 Query: 215 PDRPKYLGPFSEQTPSYLTGEFPGDCGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 586 PDRP + P +L G PGD G+D GL +DPE+ N + E++HSRWAMLGA G PE L+K GV W+ AG Q +Y + ++ ++VL+G+ EG R Sbjct: 63 PDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ-------EYFTDTT--------TLFVIELVLIGWAEGRR 168
BLAST of FC920465 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.910e-12 Identity = 51/142 (35.92%), Postives = 65/142 (45.77%), Query Frame = 2 Query: 257 PSYLTGEFPGDCGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQF 679 PSYL G PGD G+D+ GL P + +E E+IH RWAML G + PE L G W KA GG YLG P + ++ I A + + + FVE R AFDPLG + DP +F Sbjct: 56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKF 185
BLAST of FC920465 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.258e-12 Identity = 56/175 (32.00%), Postives = 78/175 (44.57%), Query Frame = 2 Query: 158 GRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDCGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQF 679 GR+TM + W+ P +P+ P++L G PGD G+D GL+ PE F + +E E+ H RWAML G + PE L G W KA +G YLGNP + ++ I A + + + F E R AFDPLG + DP +F Sbjct: 40 GRVTM--------SAEWF-PGQPR---------PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQR---TMEKDPEKKKYPGGAFDPLGFSKDPAKF 184
BLAST of FC920465 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.255e-12 Identity = 35/58 (60.34%), Postives = 40/58 (68.97%), Query Frame = 2 Query: 509 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFA 682 +L+HAQSILAIWACQVVLMG VEGYRI +FDPLGLA+DP+ FA Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFA 209
BLAST of FC920465 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.255e-12 Identity = 35/58 (60.34%), Postives = 40/58 (68.97%), Query Frame = 2 Query: 509 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFA 682 +L+HAQSILAIWACQVVLMG VEGYRI +FDPLGLA+DP+ FA Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFA 209
BLAST of FC920465 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.255e-12 Identity = 35/58 (60.34%), Postives = 40/58 (68.97%), Query Frame = 2 Query: 509 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFA 682 +L+HAQSILAIWACQVVLMG VEGYRI +FDPLGLA+DP+ FA Sbjct: 1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFA 58
BLAST of FC920465 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.255e-12 Identity = 35/58 (60.34%), Postives = 40/58 (68.97%), Query Frame = 2 Query: 509 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFA 682 +L+HAQSILAIWACQVVLMG VEGYRI +FDPLGLA+DP+ FA Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFA 207
BLAST of FC920465 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.255e-12 Identity = 35/58 (60.34%), Postives = 40/58 (68.97%), Query Frame = 2 Query: 509 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFA 682 +L+HAQSILAIWACQVVLMG VEGYRI +FDPLGLA+DP+ FA Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFA 207
BLAST of FC920465 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11 Identity = 36/66 (54.55%), Postives = 42/66 (63.64%), Query Frame = 2 Query: 488 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI-XXXXXXXXXXXXXXXXAFDPLGLADDPDQFA 682 LDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+ +FDPL DP+ FA Sbjct: 1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFA 66 The following BLAST results are available for this feature:
BLAST of FC920465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 71
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920465 ID=FC920465; Name=FC920465; organism=Citrus clementina; type=EST; length=682bpback to top |