FC920465

Overview
NameFC920465
Unique NameFC920465
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14169 contig Ccv1_Contig14169:2..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920465 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 2 
Query:  251 QTPSYLTGEFPGDCGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQI 472
            + P+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PE+L       G+  WF+AG  +
Sbjct:  195 EPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261
The following BLAST results are available for this feature:
BLAST of FC920465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
LH18_EUGGR1.617e-1143.24Light-harvesting complex I LH38 proteins (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionC32008G05EF RVDevelop1 Citrus clementina cDNA clone C32008G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920465 ID=FC920465; Name=FC920465; organism=Citrus clementina; type=EST; length=682bp
GATATTCAGAGTGCGAAAAGAAGCTTCAGCAACAAAAGGAAAAGCTTTCG
CATAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCTGGC
CAGACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGC
TGACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCCCCAGA
GCATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAG
CAAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTGTGGCTGGGA
TACCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGC
TAGAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTC
TTCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTG
GTTCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTGACTATCTTG
GCAACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCCTGC
CAGGTTGTGCTCATGGGTTTTGTTGAAGGATACAGAATTGGTGGCGGTCC
TCTTGGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGACCCAC
TTGGTTTGGCTGATGACCCCGATCAATTTGCT
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