FC920479

Overview
NameFC920479
Unique NameFC920479
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODF_PSEHT (Superoxide dismutase [Fe] OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=sodB PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.872e-20
Identity = 54/131 (41.22%), Postives = 66/131 (50.38%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 591
            F+L   PY ++ALEPH+SK+TLEFH GKHH  YV  LN  I GT+  + KSLE++V +S         FNNAAQ WNH F+W                  I   +GS               FGS W WLV
Sbjct:    2 FELPSLPYAIDALEPHISKETLEFHHGKHHNTYVVKLNGLIPGTKF-ENKSLEEIVCSSDG-----GVFNNAAQIWNHTFYWNSLSPNGGGAPTGAVADAINAKWGSFDAFKEALNDKAVNNFGSSWTWLV 126          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODF_RICBR (Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii (strain RML369-C) GN=sodB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.291e-20
Identity = 52/134 (38.81%), Postives = 65/134 (48.51%), Query Frame = 1
Query:  190 SAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 591
            S  F L   PY   + +PH + +T E+H GKHH AYV NLN  +   E    K+LE+++  S ++   +  FNNAAQ WNH FFW                  I  DFGS              QFGSGWAWLV
Sbjct:   11 SYPFVLPNLPYEKESFKPHFTAETFEYHHGKHHNAYVQNLNNLLKDKEELQKKNLEEIIDWS-SQNQNIAIFNNAAQVWNHTFFWHSIKPNGGGKPSGKILKQINEDFGSFEEFCEQFKAEATGQFGSGWAWLV 143          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODF_RICFE (Superoxide dismutase [Mn/Fe] OS=Rickettsia felis GN=sodB PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 51/134 (38.06%), Postives = 64/134 (47.76%), Query Frame = 1
Query:  190 SAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 591
            S  F L   PY   + +PH + +T ++H GKHH AYV NLN  +   E    K LE+++  S ++      FNNAAQ WNH FFW                  I +DFGS              QFGSGWAWLV
Sbjct:   11 SYPFILPDLPYDKESFKPHFTPETFDYHHGKHHNAYVQNLNNLLKDKEELQKKDLEEIIEWS-SQNSNAAIFNNAAQIWNHSFFWHSIKPQGGGKPSGKILEQINKDFGSFEGFCEQFKQEAVGQFGSGWAWLV 143          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODF_RHOCA (Superoxide dismutase [Fe] OS=Rhodobacter capsulatus GN=sodB PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 56/134 (41.79%), Postives = 70/134 (52.24%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEP-HMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA--FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 591
            F+L   PY  +AL    MSK+TLE+H   HH+AYVDN NK I GTE  +GKS+E++V  +Y  G +  +  FNNA+Q WNH  FW                  +   FGS              QFGSGWAWLV
Sbjct:    3 FELPALPYAHDALASLGMSKETLEYHHDLHHKAYVDNGNKLIAGTE-WEGKSVEEIVKGTYCAGAVAQSGIFNNASQHWNHAQFWEMMGPGEDKKMPGALEKALVESFGSVAKFKEDFAAAGAGQFGSGWAWLV 135          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODF_BABBO (Superoxide dismutase [Fe] OS=Babesia bovis GN=SODB PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 51/133 (38.35%), Postives = 65/133 (48.87%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVPK 597
            F L   PY +  L PH+S++TL FH+GKHH  YV+ LN  I GT L +  ++E++++     G     FNNAAQ WNH F+W                  IE  FGS               FGSGW WLV K
Sbjct:    3 FKLPALPYGMRELIPHISEETLSFHYGKHHAGYVNKLNSLIKGTPL-ESCTIEELIL-----GQTGAVFNNAAQIWNHTFYWNSMGPNCGGEPTGPIRKKIEEKFGSFSAFKTDFSNLLAGHFGSGWGWLVLK 129          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODF_RICCN (Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii GN=sodB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.752e-18
Identity = 49/134 (36.57%), Postives = 63/134 (47.01%), Query Frame = 1
Query:  190 SAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 591
            S  F L   PY   + +PH + +T ++H GKHH  YV NLN  +   E    K LE+++  S ++      FNNAAQ WNH FFW                  I +DFGS              QFGSGWAWL+
Sbjct:   11 SYPFILPDLPYEKESFKPHFTLETFDYHHGKHHNTYVQNLNNLLKDKEELQKKDLEEIIEWS-SQNSNAAIFNNAAQIWNHTFFWHSIKPQGGGKPSGKILEQINKDFGSFEEFCEQFKQEAVGQFGSGWAWLI 143          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODF_PLAVI (Superoxide dismutase [Fe] OS=Plasmodium vivax GN=SODB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.098e-18
Identity = 50/123 (40.65%), Postives = 59/123 (47.97%), Query Frame = 1
Query:  220 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 588
            Y LNAL PH+S++TL FH+ KHH  YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL
Sbjct:   10 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----AIFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWL 126          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODF_PLAMA (Superoxide dismutase [Fe] OS=Plasmodium malariae GN=SODB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.098e-18
Identity = 50/123 (40.65%), Postives = 59/123 (47.97%), Query Frame = 1
Query:  220 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 588
            Y LNAL PH+S++TL FH+ KHH  YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL
Sbjct:   10 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----AIFNNAAQIWNHTFYWDSMGPDCGGEPHGGIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWL 126          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODF_PLAFX (Superoxide dismutase [Fe] OS=Plasmodium falciparum (isolate HB3) GN=SODB PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.098e-18
Identity = 50/123 (40.65%), Postives = 59/123 (47.97%), Query Frame = 1
Query:  220 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 588
            Y LNAL PH+S++TL FH+ KHH  YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL
Sbjct:   10 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----AIFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWL 126          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODF_PLAFA (Superoxide dismutase [Fe] OS=Plasmodium falciparum GN=SODB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.098e-18
Identity = 50/123 (40.65%), Postives = 59/123 (47.97%), Query Frame = 1
Query:  220 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 588
            Y LNAL PH+S++TL FH+ KHH  YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL
Sbjct:   10 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----AIFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWL 126          
The following BLAST results are available for this feature:
BLAST of FC920479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
SODF_PSEHT1.872e-2041.22Superoxide dismutase [Fe] OS=Pseudoalteromonas hal... [more]
SODF_RICBR9.291e-2038.81Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii ... [more]
SODF_RICFE2.703e-1938.06Superoxide dismutase [Mn/Fe] OS=Rickettsia felis G... [more]
SODF_RHOCA6.022e-1941.79Superoxide dismutase [Fe] OS=Rhodobacter capsulatu... [more]
SODF_BABBO6.022e-1938.35Superoxide dismutase [Fe] OS=Babesia bovis GN=SODB... [more]
SODF_RICCN1.752e-1836.57Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii... [more]
SODF_PLAVI5.098e-1840.65Superoxide dismutase [Fe] OS=Plasmodium vivax GN=S... [more]
SODF_PLAMA5.098e-1840.65Superoxide dismutase [Fe] OS=Plasmodium malariae G... [more]
SODF_PLAFX5.098e-1840.65Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]
SODF_PLAFA5.098e-1840.65Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]

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Properties
Property NameValue
Genbank descriptionC32008H07EF RVDevelop1 Citrus clementina cDNA clone C32008H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920479 ID=FC920479; Name=FC920479; organism=Citrus clementina; type=EST; length=675bp
GGTTCAGGCTTTGCTTTCATCTGCTATAACCAAAGCTGTAATATATAAGG
CATGGCATCGGCGGCAGCAGCAGCTTCATCTGCTCCAACAATTTGGTTGA
CTGGCCAAGGACTTGGTGGAAGGAGTACGCGATTGCCTTTTCATTGGAGA
AACAAAAAGATGGAGCAGAGAAAGACTGGTGGCCGAATTTCTGCGAAATT
TGATTTGAAGCCTCCACCTTATCCACTGAATGCTCTGGAGCCACATATGA
GCAAGGACACCCTGGAATTCCACTGGGGAAAGCACCACAGAGCTTATGTG
GATAACCTCAACAAGCAAATTGTTGGAACTGAGCTTGGTGATGGAAAGTC
ATTGGAAGATGTCGTTATTGCTTCTTACAACAAGGGTGACTTGCTTCCAG
CTTTCAATAATGCTGCACAGGCGTGGAACCATGACTTCTTCTGGGAATCC
ATGAAACCGGGTGGTGGCGGAAAGCCGTCTGGTGAACTTCTAGGACTGAT
TGAAAGGGATTTTGGTTCTTTTGAAAAATTTCTTGAGGAATTCAAGGCGG
CTGCAGCCACTCAGTTTGGTTCTGGTTGGGCCTGGCTTGTACCAAAGCCA
ATAATAGAGCTGATGTGGCTAATGCGGTGAATCCTCTTCCATCGGAGAAG
GACAAGAGCCTTTTAGTGGTGAAGA
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