FC920479

Overview
NameFC920479
Unique NameFC920479
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM_DEIRA (Superoxide dismutase [Mn] OS=Deinococcus radiodurans GN=sodA PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.895e-13
Identity = 50/142 (35.21%), Postives = 62/142 (43.66%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV-----IASYNKGDLLPAFNNAAQAWNHDFFW----XXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVPK 597
            + L   PY  +ALEPH+   T+E H  KHH+ YVDN NK + GTE  D   +E ++     + +  KG L    NNA    NH  FW                      I   FGS             T+FGSGWAWLV K
Sbjct:    3 YTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFAD-LPVEQLIQQLDRVPADKKGALR---NNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVVK 140          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM_YEREN (Superoxide dismutase [Mn] OS=Yersinia enterocolitica GN=sodA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 50/139 (35.97%), Postives = 61/139 (43.88%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVPK 597
            + L   PY  +ALEPH  K T+E H  KHH+ YV+N N  +         S+ED++       D +PA       NNA    NH  FW                  IERDFGS             T+FGSGWAWLV K
Sbjct:    3 YSLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANTVLESFPELAKFSVEDLI----KDLDKVPAEKRTFMRNNAGGHANHSLFW--KGLKLGTTLTGDLKAAIERDFGSVDSFKEKFEAAAATRFGSGWAWLVLK 135          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM_PSEAE (Superoxide dismutase [Mn] OS=Pseudomonas aeruginosa GN=sodA PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 43/134 (32.09%), Postives = 58/134 (43.28%), Query Frame = 1
Query:  205 LKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVPKP 600
            L P PY  +ALEPH+   T+E H  KHH+ YV+NLN  + GT   + + +E ++  +A   +    P  NN     NH  FW                  I+   G              T+FGSGWAWL   P
Sbjct:    5 LPPLPYAYDALEPHIDALTMEIHHSKHHQTYVNNLNAALEGTPYAE-QPVESLLRQLAGLPEKLRTPVVNNGGGHANHSLFWTVMSPQGGGRPDGDLGRAIDEQLGGFEAFKDAFTKAALTRFGSGWAWLSVTP 137          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM_HAEIN (Superoxide dismutase [Mn] OS=Haemophilus influenzae GN=sodA PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 48/130 (36.92%), Postives = 59/130 (45.38%), Query Frame = 1
Query:  220 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-----TELGDGKSLEDV-VIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 591
            Y  NALEPH    T+E H  KHH+AYV+N N  + G      E+  G  + ++  I +  +G L    NNA    NH  FW                  IERDFGS             T+FGSGWAWLV
Sbjct:   10 YAYNALEPHFDAQTMEIHHSKHHQAYVNNANAALEGLPAELVEMYPGHLISNLDKIPAEKRGALR---NNAGGHTNHSLFW--KSLKKGTTLQGALKDAIERDFGSVDAFKAEFEKAAATRFGSGWAWLV 134          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM2_PLEBO (Superoxide dismutase [Mn] 2 OS=Plectonema boryanum GN=sodA2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 45/133 (33.83%), Postives = 57/133 (42.86%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 591
            F+LKP PY  +ALEP++   T++ H  KHH AYV+NLN  I         S+ED+V  +    +       NNA    NH  FW                  I   FGS              +FGSGW WLV
Sbjct:    3 FELKPLPYAYDALEPYIDATTMQLHHDKHHAAYVNNLNAAIEKYSDLQSMSVEDLVTHLDRVPEDVRTTVRNNAGGHVNHTMFWEIMGANGSGAPTGAISEAINNSFGSFDAFKQQFNDAGTKRFGSGWVWLV 135          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODF_CAMCO (Superoxide dismutase [Fe] OS=Campylobacter coli GN=sodB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 46/138 (33.33%), Postives = 61/138 (44.20%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL-------IERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 591
            F+L+  PY  NA    +S +T  +H GKHH  YV NLN  I  TE    K L  ++ +S         FNNAAQ +NHDF++                 +       +E++FGS               FGSGW WLV
Sbjct:    2 FELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKYTEFA-SKDLVSIIKSSSG-----GVFNNAAQVYNHDFYFDCIKPITGCGCGGSCQSMDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLV 133          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM_XANCP (Superoxide dismutase [Mn] OS=Xanthomonas campestris pv. campestris GN=sodA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.100e-12
Identity = 42/136 (30.88%), Postives = 61/136 (44.85%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVPKP 600
            + L   PY  +ALEP++   T+E H  KHH+ Y++N+N  + GTE  D   +E++V  + S  +    P  NN     NH  FW                  I++D G              ++FGSGWAWL   P
Sbjct:    3 YTLPQLPYAYDALEPNIDAQTMEIHHTKHHQTYINNVNAALEGTEYAD-LPVEELVSKLKSLPENLQGPVRNNGGGHANHSLFWTVMSPNGGGEPKGEVAKAIDKDIGGFEKFKEAFTKAALSRFGSGWAWLSVTP 137          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM_XANC8 (Superoxide dismutase [Mn] OS=Xanthomonas campestris pv. campestris (strain 8004) GN=sodA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.100e-12
Identity = 42/136 (30.88%), Postives = 61/136 (44.85%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVPKP 600
            + L   PY  +ALEP++   T+E H  KHH+ Y++N+N  + GTE  D   +E++V  + S  +    P  NN     NH  FW                  I++D G              ++FGSGWAWL   P
Sbjct:    3 YTLPQLPYAYDALEPNIDAQTMEIHHTKHHQTYINNVNAALEGTEYAD-LPVEELVSKLKSLPENLQGPVRNNGGGHANHSLFWTVMSPNGGGEPKGEVAKAIDKDIGGFEKFKEAFTKAALSRFGSGWAWLSVTP 137          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODM_LISMO (Superoxide dismutase [Mn] OS=Listeria monocytogenes GN=sodA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.876e-12
Identity = 42/133 (31.58%), Postives = 59/133 (44.36%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 591
            ++L   PY  +ALEP+  K+T+E H+ KHH  YV  LN+ + G      KS E++V  + S  +       N+     NH  FW                  IE +FG+              +FGSGWAWLV
Sbjct:    3 YELPKLPYTYDALEPNFDKETMEIHYTKHHNTYVTKLNEAVAGHPELASKSAEELVTNLDSVPEDIRGAVRNHGGGHANHTLFWSILSPNGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLV 135          
BLAST of FC920479 vs. ExPASy Swiss-Prot
Match: SODF_METJ (Superoxide dismutase [Mn/Fe] OS=Methylomonas J GN=sodB PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.451e-12
Identity = 44/140 (31.43%), Postives = 56/140 (40.00%), Query Frame = 1
Query:  199 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLL------PAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVPKP 600
            + L P  Y   ALEPH+   T+E H  KHH+ Y++N+N  + GT   +     + V A   K D L      P  NN     NH  FW                  I+ D G              T+FGSGWAWL   P
Sbjct:    2 YTLPPLDYAYTALEPHIDAQTMEIHHTKHHQTYINNVNAALEGTSFAN-----EPVEALLQKLDSLPENLRGPVRNNGGGHANHSLFWKVLTPNGGGEPKGALADAIKSDIGGLDTFKEAFTKAALTRFGSGWAWLSVTP 136          
The following BLAST results are available for this feature:
BLAST of FC920479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
SODM_DEIRA2.895e-1335.21Superoxide dismutase [Mn] OS=Deinococcus radiodura... [more]
SODM_YEREN3.781e-1335.97Superoxide dismutase [Mn] OS=Yersinia enterocoliti... [more]
SODM_PSEAE4.938e-1332.09Superoxide dismutase [Mn] OS=Pseudomonas aeruginos... [more]
SODM_HAEIN4.938e-1336.92Superoxide dismutase [Mn] OS=Haemophilus influenza... [more]
SODM2_PLEBO4.938e-1333.83Superoxide dismutase [Mn] 2 OS=Plectonema boryanum... [more]
SODF_CAMCO4.938e-1333.33Superoxide dismutase [Fe] OS=Campylobacter coli GN... [more]
SODM_XANCP1.100e-1230.88Superoxide dismutase [Mn] OS=Xanthomonas campestri... [more]
SODM_XANC81.100e-1230.88Superoxide dismutase [Mn] OS=Xanthomonas campestri... [more]
SODM_LISMO1.876e-1231.58Superoxide dismutase [Mn] OS=Listeria monocytogene... [more]
SODF_METJ2.451e-1231.43Superoxide dismutase [Mn/Fe] OS=Methylomonas J GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32008H07EF RVDevelop1 Citrus clementina cDNA clone C32008H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920479 ID=FC920479; Name=FC920479; organism=Citrus clementina; type=EST; length=675bp
GGTTCAGGCTTTGCTTTCATCTGCTATAACCAAAGCTGTAATATATAAGG
CATGGCATCGGCGGCAGCAGCAGCTTCATCTGCTCCAACAATTTGGTTGA
CTGGCCAAGGACTTGGTGGAAGGAGTACGCGATTGCCTTTTCATTGGAGA
AACAAAAAGATGGAGCAGAGAAAGACTGGTGGCCGAATTTCTGCGAAATT
TGATTTGAAGCCTCCACCTTATCCACTGAATGCTCTGGAGCCACATATGA
GCAAGGACACCCTGGAATTCCACTGGGGAAAGCACCACAGAGCTTATGTG
GATAACCTCAACAAGCAAATTGTTGGAACTGAGCTTGGTGATGGAAAGTC
ATTGGAAGATGTCGTTATTGCTTCTTACAACAAGGGTGACTTGCTTCCAG
CTTTCAATAATGCTGCACAGGCGTGGAACCATGACTTCTTCTGGGAATCC
ATGAAACCGGGTGGTGGCGGAAAGCCGTCTGGTGAACTTCTAGGACTGAT
TGAAAGGGATTTTGGTTCTTTTGAAAAATTTCTTGAGGAATTCAAGGCGG
CTGCAGCCACTCAGTTTGGTTCTGGTTGGGCCTGGCTTGTACCAAAGCCA
ATAATAGAGCTGATGTGGCTAATGCGGTGAATCCTCTTCCATCGGAGAAG
GACAAGAGCCTTTTAGTGGTGAAGA
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