FC920481
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAB (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=arnA PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.357e-13 Identity = 65/227 (28.63%), Postives = 108/227 (47.58%), Query Frame = 2 Query: 11 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV------TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643 Q R+L+ G GFIG+HL ++L+ + + EV +D GS D + + P F + D+ E + + D + L A+PI Y NP++ + + L ++ + G R++ STSEVYG DP +D S V PI R Y K++ + +++ Y +Q G+ + R FN GPR++ I R ++ I + G P+ + G Q Sbjct: 315 QRRTRVLILGVNGFIGNHLSERLLRDGRYEVHGMD---IGS-DAIERLKADPHFHFVEGDIGIHSEWLEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYGMCQDP-DFDEDRSNL-VVGPINKQRWIYSVSKQLLDRVIWAYGQQ-GLRFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQ 534
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: ARNA_PSE14 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=arnA PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13 Identity = 61/225 (27.11%), Postives = 109/225 (48.44%), Query Frame = 2 Query: 23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGN-----VNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQ 643 R+L+ G GFIG+HL ++L+++++ ++ +D GS D + + P F I D++ E + + D + L A+PI Y NP++ + + L ++ + R++ STSEVYG QD S+ + V PI R Y K++ + +++ Y Q G++ + R FN GPR++ I R ++ I + G P+ + G Q Sbjct: 320 RVLILGVNGFIGNHLSERLLQDDRYDIYGMD---IGS-DAIERLRTKPNFHFIEGDISIHTEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRVIFPSTSEVYG----MCQDASFNEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAY-GQKGLQFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQ 535
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: RFBB_SALTY (dTDP-glucose 4,6-dehydratase OS=Salmonella typhimurium GN=rfbB PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13 Identity = 62/233 (26.61%), Postives = 105/233 (45.06%), Query Frame = 2 Query: 20 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA----------KRVGARILLTSTSEVYGDPLVHPQDES------YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQL 646 M+IL+TGGAGFIGS +V +++N ++ V+ +D + G+ ++L R+ D+ + I + D + HLA + P I+TN++GT +L +A K+ R ST EVYGD L HP + + S Y K ++ L+ + R +G+ + N YGP + +++ I A+ G+PL + G Q+ Sbjct: 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGD-LPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKPLPIYGKGDQI 230
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: RFFG_ECOLI (dTDP-glucose 4,6-dehydratase OS=Escherichia coli (strain K12) GN=rffG PE=1 SV=3) HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13 Identity = 64/226 (28.32%), Postives = 102/226 (45.13%), Query Frame = 2 Query: 23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA----------KRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQL 646 +IL+TGGAGFIGS LV ++ + V+VVD + G+ +L RF + D+ + + + D + HLA + P I+TN++GT +L A K+ R ST EVYGD +H D+ ++ P S Y K ++ L+ + R +G+ I N YGP + +++ I A+ G+ L V G Q+ Sbjct: 3 KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGD--LHSTDD-FFTETTPYAPSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPE--KLIPLMILNALAGKSLPVYGNGQQI 223
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: RFBB_NEIMB (dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup B GN=rfbB1 PE=3 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13 Identity = 61/226 (26.99%), Postives = 105/226 (46.46%), Query Frame = 2 Query: 23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK----------RVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQL 646 +ILVTGGAGFIGS +V ++ N ++ V+ VD + G+ ++L + +PR+ + D+ + ++ D + HLA + + + I+TN++GT N+L A+ R ST EVYGD + + P S Y K ++ L+ + R +G+ + N YGP + +++ I A+ G+PL V G Q+ Sbjct: 3 KILVTGGAGFIGSAVVRHIIRNTRDAVVNVDKLTYAGNLESLTEVADNPRYAFEQVDICDRAELDRVFAQYRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYWQQMPSEQHEAFRFHHISTDEVYGD---LGGTDDLFTETAPYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPE--KLIPLMILNALDGKPLPVYGDGMQI 223
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: GALE_STRTR (UDP-glucose 4-epimerase OS=Streptococcus thermophilus GN=galE PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13 Identity = 58/191 (30.37%), Postives = 93/191 (48.69%), Query Frame = 2 Query: 20 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI--------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTSEVYGDPLVHPQDESYWGN-VNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 562 M ILV GGAG+IGSH+VD+L+E + +V+VVD+ TG + + HP + D+++ + +VD + H A + P+K N G + +L + G + I+ +ST+ YG P P E+ N +NP Y E K + ET+M + +GI+ R FN G + + Sbjct: 1 MAILVLGGAGYIGSHMVDRLVEKGQEKVVVVDSLVTGHRAAV-----HPDAIFYQGDLSDQDFMRKVFKENPDVDAVIHFAAYSLVGESMEKPLKYFDNNTAGMVKLLEVMNECGVKYIVFSSTAATYGIPEEIPILETTPQNPINP------YGESKLMMETIMKWSDQAYGIKYVPLRYFNVAGANLMV 180
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: RFBB_SHIFL (dTDP-glucose 4,6-dehydratase OS=Shigella flexneri GN=rfbB PE=3 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13 Identity = 65/234 (27.78%), Postives = 106/234 (45.30%), Query Frame = 2 Query: 20 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA----------KRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPI-------GVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQL 646 M+ILVTGGAGFIGS +V ++ N ++ V+ VD + G+ ++L R+ D+ + + + + D + HLA + P I+TN++GT +L A K+ R ST EVYGD L HP DE+ P+ S Y K ++ L+ + R +G+ + N YGP + +++ I A+ G+ L + G Q+ Sbjct: 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYAFEHADICDAVAMSRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALNDEKKKSFRFHHISTDEVYGD-LPHP-DEANNNEALPLFTETTAYAPSSPYSASKASSDHLVRAWKRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKALPIYGKGDQI 230
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: RFBB_NEIMA (dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup A GN=rfbB1 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13 Identity = 61/226 (26.99%), Postives = 104/226 (46.02%), Query Frame = 2 Query: 23 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA----------KRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQL 646 +ILVTGGAGFIGS +V ++ N ++ V+ +D + G+ ++L +PR+ + D+ + ++ D + HLA + + + I+TN++GT N+L A K R ST EVYGD + + P S Y K ++ L+ + R +G+ + N YGP + +++ I A+ G+PL V G Q+ Sbjct: 3 KILVTGGAGFIGSAVVRHIIRNTQDSVVNLDKLTYAGNLESLTDIADNPRYAFEQVDICDRAELDRVFAQHRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYRQQMPSEKHEAFRFHHISTDEVYGD---LSGTDDLFTETAPYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPE--KLIPLMILNALDGKPLPVYGDGMQI 223
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: TGDS_DICDI (dTDP-D-glucose 4,6-dehydratase OS=Dictyostelium discoideum GN=tgds PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.799e-13 Identity = 59/222 (26.58%), Postives = 104/222 (46.85%), Query Frame = 2 Query: 23 RILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGDPLVHPQDESYWGNVNP-------IGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPG 637 +IL+TGGAGFIGSHL L + KN ++IV+D + + +NL + F+ + ++ + L+E +D + HLA +K + N++GT +L K + + ST EVYG L+ D++ ++N + + Y K AE L+ Y++ + + I R N YGP+ + +++ FI + + T+ G Sbjct: 11 KILITGGAGFIGSHLAIYLTKKFKNSKIIVLDKLDYCSNINNLGCVLKELNFKFYKGNILDSELLENIFEKEKIDIVIHLAAYTHVDNSFKQSIKFTENNILGTHYLLETCKNYKLKKFIYVSTDEVYGSGLIEDNDDNN-NSINQSSNEKSILNPTNPYSASKAGAEHLVQSYYKSFKLPVIITRANNIYGPKQYPE--KIIPKFINLLLNNKKCTIHGTG 229
BLAST of FC920481 vs. ExPASy Swiss-Prot
Match: RFBB_ECOLI (dTDP-glucose 4,6-dehydratase OS=Escherichia coli (strain K12) GN=rfbB PE=3 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 8.799e-13 Identity = 63/233 (27.04%), Postives = 105/233 (45.06%), Query Frame = 2 Query: 20 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTE-PLLIEV------DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA----------KRVGARILLTSTSEVYGDPLVHPQDES------YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQL 646 M+ILVTGGAGFIGS +V ++ N ++ V+ VD + G++++L R+ D+ + P + + D + HLA + P I+TN++GT +L A K+ R ST EVYGD L HP + + + S Y K ++ L+ + R +G+ + N YGP + +++ I A+ G+ L + G Q+ Sbjct: 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNRESLADVSDSERYVFEHADICDAPAMARIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDSDKKNSFRFHHISTDEVYGD-LPHPDEVNNTEELPLFTETTAYAPSSPYSASKASSDHLVRAWKRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKALPIYGKGDQI 230 The following BLAST results are available for this feature:
BLAST of FC920481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 111
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920481 ID=FC920481; Name=FC920481; organism=Citrus clementina; type=EST; length=693bpback to top |