FC920487

Overview
NameFC920487
Unique NameFC920487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920487 vs. ExPASy Swiss-Prot
Match: AQP5_MOUSE (Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 49/157 (31.21%), Postives = 76/157 (48.41%), Query Frame = 3
Query:  222 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS 692
            E+   +F++A+ AEF+A            + + S               IL I+ AFG  I  L      +SGGHINPA+T  L +  ++SL+RA+ Y+ AQ +GAI+G G++         R     N L++  + G  +  E+I TF L   +FS
Sbjct:    4 EVCSVAFFKAVFAEFLATLIFVFFGLGSALKWPSALPT-----------ILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAIFYVAAQLVGAIAGAGILYWLAPG-NARGNLAVNALSNNTTPGKAVVVELILTFQLALCIFS 148          
BLAST of FC920487 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 51/149 (34.23%), Postives = 74/149 (49.66%), Query Frame = 3
Query:  246 RALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS 692
            RA  AEF +            + Y   T         AG+    ++ AF   +FV V   A +SGGH+NPAVTFG F+   ++L+RA++Y +AQ LGA+    L+K       T     A  L+ G +    +  EI+ TF LVYTV++
Sbjct:   21 RAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATP--AGLVAASLSHAFA--LFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLKVSTGGMET----AAFSLSYGVTPWNAVVFEIVMTFGLVYTVYA 161          
BLAST of FC920487 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 53/157 (33.76%), Postives = 74/157 (47.13%), Query Frame = 3
Query:  222 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS 692
            EL   SF+RA+ AEF A            +G   +  P         + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA+ YMVAQ LGA++G  ++ +       R     N L  G S G     EI  T   V  +F+
Sbjct:    3 ELRSASFWRAICAEFFASLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPP-AVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFA 147          
BLAST of FC920487 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.799e-13
Identity = 52/157 (33.12%), Postives = 74/157 (47.13%), Query Frame = 3
Query:  222 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS 692
            EL   SF+RA+ AEF A            +G   +  P         + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA+ YM AQ LGA++G  ++ +   +   R     N L  G S G     EI  T   V  +F+
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMAAQLLGAVAGAAVLYSVTPA-AVRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFA 147          
BLAST of FC920487 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.149e-12
Identity = 54/151 (35.76%), Postives = 74/151 (49.01%), Query Frame = 3
Query:  246 RALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVK--AFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS 692
            +A +AEFIA            I Y   T    N       G++ IA A    +FV V   A ISGGH+NPAVTFGL +   ++++  + Y +AQ LGA     L+K     K+  T    G +EL        G+  EI+ TF LVYTV++
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYGQLT----NGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGLFYWIAQLLGASIACLLLKFVTHGKAIPTHGVAGISELE-------GVVMEIVITFALVYTVYA 158          
BLAST of FC920487 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.149e-12
Identity = 52/157 (33.12%), Postives = 77/157 (49.04%), Query Frame = 3
Query:  222 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS 692
            EL   SF+RA++AEF+             +G   +  P  +       G+LG A AFG     LV     +SGGHINPA+T    LA ++SL RA+ Y++AQ LGA++G G++     +   R   G + L      G G   E++ T   +  VF+
Sbjct:    3 ELRSSSFWRAILAEFLGSLLYTLLG----LGASLRWAPGPH-------GVLGSALAFGLAQATLVQALGHVSGGHINPAITLAFLLASQLSLPRALGYLLAQLLGALAGAGVLYGVTPA-AVRGTLGLSALHPSVGPGQGTVVELLLTAQFILCVFA 147          
BLAST of FC920487 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 52/157 (33.12%), Postives = 74/157 (47.13%), Query Frame = 3
Query:  222 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS 692
            EL   SF+RA+ AEF A            +G   +  P         + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA+ Y+VAQ LGA++G  ++ +       R     N L  G S G     EI  T   V  +F+
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPP-AVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFA 147          
BLAST of FC920487 vs. ExPASy Swiss-Prot
Match: AQP_CICVR (Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 44/119 (36.97%), Postives = 65/119 (54.62%), Query Frame = 3
Query:  354 CAGVGI------LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS 692
            C GV I      + IA  FG +I  +V C   +SG HINPAVT GL +   +S+++A+ Y++ QC+GAI+G  ++K    + + R       LA G +  +G   E   TFVL+  V S
Sbjct:   47 CTGVQISEGDVVVRIALTFGFIIATMVQCIGHVSGCHINPAVTCGLLVTGHISILKAIFYIIVQCVGAIAGSAILKVITPAEF-RGTLCMTSLAPGVTPPMGFLVEACITFVLILLVQS 164          
BLAST of FC920487 vs. ExPASy Swiss-Prot
Match: AQPZ2_RHIME (Aquaporin Z 2 OS=Rhizobium meliloti GN=aqpZ2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 40/116 (34.48%), Postives = 60/116 (51.72%), Query Frame = 3
Query:  360 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKA-------FQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTV 686
            G+G+LG+++AFG  +  + Y   GISGGH NPAV+ GL +A +V     V Y++AQ  GAI    ++         FQ   +   G G +    GYS    L  E++ TF  +  +
Sbjct:   33 GIGLLGVSFAFGLTVLTMAYTVGGISGGHFNPAVSLGLAVAGRVPAASLVSYVIAQVAGAIIAAAVLYVIATGKADFQLGSFAANGYGEHS-PGGYSLTAALVTEVVMTFFFLIII 147          
BLAST of FC920487 vs. ExPASy Swiss-Prot
Match: TIP21_MAIZE (Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 52/149 (34.90%), Postives = 69/149 (46.31%), Query Frame = 3
Query:  246 RALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS 692
            +A +AEFIA            I Y   T    N       G++ IA A    +FV V   A ISGGH+NPAVTFGL +   ++++  V Y VAQ LGA      V      + T           G S   G+  E++ TF LVYTV++
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYGQLT----NGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGVFYWVAQLLGA-----TVACLLLGFVTHGKAIPTHAVAGISELEGVVFEVVITFALVYTVYA 158          
The following BLAST results are available for this feature:
BLAST of FC920487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
AQP5_MOUSE3.950e-1331.21Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1[more]
TIP13_ARATH5.158e-1334.23Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
MIP_BOVIN6.737e-1333.76Lens fiber major intrinsic protein OS=Bos taurus G... [more]
MIP_RABIT8.799e-1333.12Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
TIP21_ORYSJ1.149e-1235.76Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
MIP_CHICK1.149e-1233.12Lens fiber major intrinsic protein OS=Gallus gallu... [more]
MIP_SHEEP1.501e-1233.12Lens fiber major intrinsic protein OS=Ovis aries G... [more]
AQP_CICVR1.501e-1236.97Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 ... [more]
AQPZ2_RHIME1.501e-1234.48Aquaporin Z 2 OS=Rhizobium meliloti GN=aqpZ2 PE=3 ... [more]
TIP21_MAIZE1.960e-1234.90Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32009A08EF RVDevelop1 Citrus clementina cDNA clone C32009A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920487 ID=FC920487; Name=FC920487; organism=Citrus clementina; type=EST; length=693bp
GATCCAAAAACAAGCAAAAAAAAAGAAAAAGAAAAAGAAAAAGGAAAAGG
CTTCTCTCTCGTTGTGCTTGTGGCTTTGCAGTGCTCTCAGTTTTCTCTGT
TTCTCTCCAAATCATTGTTACTGGTTTTCCAATGGCGAAGGACACTGGGG
TGGCAGAGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGCCG
GAGCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGAGC
CTTGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGTCT
TGACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGAC
GGCTGTGCCGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGCAT
GATCTTTGTCCTCGTTTACTGCACCGCAGGTATCTCAGGTGGTCACATTA
ACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGTC
CGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGTGT
TGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGTG
GGGCCAACGAGCTGGCCGATGGGTACAGCACCGGCGTTGGATTGGCCGCC
GAGATCATCGGCACCTTTGTCTTGGTTTACACTGTCTTCTCGG
back to top