FC920490
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2) HSP 1 Score: 120.939 bits (302), Expect = 6.491e-27 Identity = 62/179 (34.64%), Postives = 111/179 (62.01%), Query Frame = 1 Query: 172 EDDLYSRLKSLQRQL-EFIDIQEEY--VKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 ED+ L S +R+L E DI+++ ++ ++ + ++ +++ ++K +QSV ++G+ ++ + + IV +T G Y V +IN+E LK V+L + ++ LP E D + +S + +++Y+D+GG Q +E+RE VELPL + EL+K++GI PP+G LL+GPPGTGK Sbjct: 19 EDERTKALNSYRRKLAECRDIEQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVLKQLSEEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRVGITPPKGCLLFGPPGTGK 197
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.107e-26 Identity = 63/194 (32.47%), Postives = 110/194 (56.70%), Query Frame = 1 Query: 118 VSEPPPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 +++P D ++ + ++ RLK L+ QL K L ++ +++ ++K +QSV ++G+ ++ + + IV +T G Y V +++ LKP VAL + ++ LP E D + +S + +V+Y++IGG Q +E+RE +ELPLT+ EL++++GI PP+G LLYGPPGTGK Sbjct: 1 MADPRDKALQDYRKKLLEHKEIDGRLKELREQL--------------KELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGK 180
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.107e-26 Identity = 63/194 (32.47%), Postives = 110/194 (56.70%), Query Frame = 1 Query: 118 VSEPPPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 +++P D ++ + ++ RLK L+ QL K L ++ +++ ++K +QSV ++G+ ++ + + IV +T G Y V +++ LKP VAL + ++ LP E D + +S + +V+Y++IGG Q +E+RE +ELPLT+ EL++++GI PP+G LLYGPPGTGK Sbjct: 1 MADPRDKALQDYRKKLLEHKEIDGRLKELREQL--------------KELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGK 180
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.107e-26 Identity = 63/194 (32.47%), Postives = 110/194 (56.70%), Query Frame = 1 Query: 118 VSEPPPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 +++P D ++ + ++ RLK L+ QL K L ++ +++ ++K +QSV ++G+ ++ + + IV +T G Y V +++ LKP VAL + ++ LP E D + +S + +V+Y++IGG Q +E+RE +ELPLT+ EL++++GI PP+G LLYGPPGTGK Sbjct: 1 MADPRDKALQDYRKKLLEHKEIDGRLKELREQL--------------KELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGK 180
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.107e-26 Identity = 63/194 (32.47%), Postives = 110/194 (56.70%), Query Frame = 1 Query: 118 VSEPPPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 +++P D ++ + ++ RLK L+ QL K L ++ +++ ++K +QSV ++G+ ++ + + IV +T G Y V +++ LKP VAL + ++ LP E D + +S + +V+Y++IGG Q +E+RE +ELPLT+ EL++++GI PP+G LLYGPPGTGK Sbjct: 1 MADPRDKALQDYRKKLLEHKEIDGRLKELREQL--------------KELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGK 180
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.088e-25 Identity = 63/216 (29.17%), Postives = 112/216 (51.85%), Query Frame = 1 Query: 115 PVSEPPPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNG---------------------IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 P+ E S D S ED + + L+ ++ + + E + K ++ QE++K + +P ++G +E+++ N ++ ++T ++ ++ ++ + LKP V +++ S ++D LP E DS + + EKP YNDIGG + Q QE+ EA+ LP+TH E ++++G+ PP+GVLLYGPPGTGK Sbjct: 4 PMVEDTSSFEEDQLASMSTED-IVRATRLLENEIRILKEDAQRTNLECDSYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGK 218
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3) HSP 1 Score: 115.161 bits (287), Expect = 3.562e-25 Identity = 59/196 (30.10%), Postives = 109/196 (55.61%), Query Frame = 1 Query: 175 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD------------------QNNG---IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 DD+ + L ++ + + + + +++K ++ QE++K + +P ++G +E+++ Q G ++ ++T ++ ++ ++ + LKP V +++ S ++D LP E DS + + EKP YNDIGG + Q QE+ EA+ LP+TH E ++++GI PP+GVLLYGPPGTGK Sbjct: 22 DDIGRASRLLANEIRILKEESQRTNLDLESVKEKIKENQEKIKLNKQLPYLVGNIVEILEMSPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGK 217
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25 Identity = 63/216 (29.17%), Postives = 111/216 (51.39%), Query Frame = 1 Query: 115 PVSEPPPSTRSDLTEQWSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNG---------------------IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 P+ E S D S ED + + L ++ + + E + K ++ QE++K + +P ++G +E+++ N ++ ++T ++ ++ ++ + LKP V +++ S ++D LP E DS + + EKP YNDIGG + Q QE+ EA+ LP+TH E ++++G+ PP+GVLLYGPPGTGK Sbjct: 4 PMVEDTSSFEEDQLASMSTED-ITRATRLLDNEIRILKEDAQRTNLECDSYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGK 218
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS6A_RAT (26S protease regulatory subunit 6A OS=Rattus norvegicus GN=Psmc3 PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.036e-24 Identity = 61/229 (26.64%), Postives = 116/229 (50.66%), Query Frame = 1 Query: 115 PVSEPPPSTRSDLTEQWSDED--------------DLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD-----------------QNNG---IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 P E P + + + W + + ++ R + L +++ + + V E + +K ++ E++K +++P ++ +E++D Q G ++ ++T Y++ ++ ++ E LKP V +++ S +++ LP E DS + + E+P Y+DIGG D Q QE+ EA+ LP+ H E ++ +GI PP+GVL+YGPPGTGK Sbjct: 5 PTPESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 233
BLAST of FC920490 vs. ExPASy Swiss-Prot
Match: PRS6A_HUMAN (26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3) HSP 1 Score: 113.235 bits (282), Expect = 1.353e-24 Identity = 57/195 (29.23%), Postives = 108/195 (55.38%), Query Frame = 1 Query: 175 DDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVD-----------------QNNG---IVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGK 699 +++ R + L +++ + + V E + +K ++ E++K +++P ++ +E++D Q G ++ ++T Y++ ++ ++ E LKP V +++ S +++ LP E DS + + E+P Y+DIGG D Q QE+ EA+ LP+ H E ++ +GI PP+GVL+YGPPGTGK Sbjct: 39 EEIIQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 233 The following BLAST results are available for this feature:
BLAST of FC920490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 147
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920490 ID=FC920490; Name=FC920490; organism=Citrus clementina; type=EST; length=702bpback to top |