FC920499

Overview
NameFC920499
Unique NameFC920499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920499 vs. ExPASy Swiss-Prot
Match: PSAF_GRATL (Photosystem I reaction center subunit III OS=Gracilaria tenuistipitata var. liui GN=psaF PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.383e-29
Identity = 62/117 (52.99%), Postives = 78/117 (66.67%), Query Frame = 2
Query:  308 AVADISGLTPCKESKQFAKREKQQLKKLESSPKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKP 658
            A  + +GLT C+ES  F KR    +KKLE+    Y  ++ PA+A++  + KTK RF+ Y K G+LCG+DGLPHLI  G   H GEF+ PG+LFLYI GWIGWVGR YL  IS   KP
Sbjct:   24 AEVETAGLTKCQESPAFTKRLNNSVKKLETRLAKYDANTPPAIALQTQIIKTKIRFNKYAKSGILCGTDGLPHLITDGRWNHAGEFMIPGVLFLYITGWIGWVGRGYLRDISQTTKP 140          
BLAST of FC920499 vs. ExPASy Swiss-Prot
Match: PSAF_CYACA (Photosystem I reaction center subunit III OS=Cyanidium caldarium GN=psaF PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.970e-27
Identity = 57/103 (55.34%), Postives = 67/103 (65.05%), Query Frame = 2
Query:  323 SGLTPCKESKQFAKREKQQLKKLESSPKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYL 631
            S LTPC+ S QF  R    +KKLE+    Y  +S    +IK  +EKTK RFD Y K  LLCG DGLPHLI  GD +H GEF  P +LF+YIAGWIGW G+ YL
Sbjct:   29 STLTPCENSAQFQARLNNNIKKLENKLTYYKQNSQEYTSIKQQIEKTKIRFDKYAKSSLLCGEDGLPHLITDGDWQHSGEFFIPSVLFIYIAGWIGWAGKGYL 131          
BLAST of FC920499 vs. ExPASy Swiss-Prot
Match: PSAF_SYNP6 (Photosystem I reaction center subunit III OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psaF PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.211e-22
Identity = 57/115 (49.57%), Postives = 67/115 (58.26%), Query Frame = 2
Query:  308 AVADISGLTPCKESKQFAKREKQQLKKLESSPKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEK 652
            A AD++GLTPC ES +F +R                       A  A   + K RF+NY +   LCG+DGLPHLIV G   H G+FI P LLFLYIAGWIGWVGRSYL AI  +K
Sbjct:   21 ASADVAGLTPCSESPRFIQR-----------------------AEAAATPQAKARFENYSQ--ALCGADGLPHLIVDGRLDHAGDFIIPSLLFLYIAGWIGWVGRSYLQAIKSDK 110          
BLAST of FC920499 vs. ExPASy Swiss-Prot
Match: PSAF_THEEB (Photosystem I reaction center subunit III OS=Thermosynechococcus elongatus (strain BP-1) GN=psaF PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.311e-19
Identity = 53/116 (45.69%), Postives = 68/116 (58.62%), Query Frame = 2
Query:  308 AVADISGLTPCKESKQFAKREKQQLKKLESSPKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAI--SGE 649
            A AD++GL PCK+S  F KR                  +A A+   A     ++RF+ Y +   LCG DGLPHL+V G     G+F+ P +LFLYIAGWIGWVGR+YLIA+  SGE
Sbjct:   21 ASADVAGLVPCKDSPAFQKR------------------AAAAVNTTADPASGQKRFERYSQ--ALCGEDGLPHLVVDGRLSRAGDFLIPSVLFLYIAGWIGWVGRAYLIAVRNSGE 116          
BLAST of FC920499 vs. ExPASy Swiss-Prot
Match: PSAF_SYNEN (Photosystem I reaction center subunit III OS=Synechococcus elongatus naegeli GN=psaF PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.311e-19
Identity = 53/116 (45.69%), Postives = 68/116 (58.62%), Query Frame = 2
Query:  308 AVADISGLTPCKESKQFAKREKQQLKKLESSPKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAI--SGE 649
            A AD++GL PCK+S  F KR                  +A A+   A     ++RF+ Y +   LCG DGLPHL+V G     G+F+ P +LFLYIAGWIGWVGR+YLIA+  SGE
Sbjct:   21 ASADVAGLVPCKDSPAFQKR------------------AAAAVNTTADPASGQKRFERYSQ--ALCGEDGLPHLVVDGRLSRAGDFLIPSVLFLYIAGWIGWVGRAYLIAVRNSGE 116          
BLAST of FC920499 vs. ExPASy Swiss-Prot
Match: PSAF_SYNY3 (Photosystem I reaction center subunit III OS=Synechocystis sp. (strain PCC 6803) GN=psaF PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.039e-16
Identity = 49/120 (40.83%), Postives = 60/120 (50.00%), Query Frame = 2
Query:  299 PQPAVADISGLTPCKESKQFAKREKQQLKKLESSPKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKP 658
            P  +  D + LTPC E+  +  + K  L           P+S             K R + Y     LCG +G PHLIV G   H G+F+ P +LFLYIAGWIGWVGRSYLI I   K P
Sbjct:   19 PSASADDFANLTPCSENPAYLAKSKNFLNTTND------PNSG------------KIRAERYAS--ALCGPEGYPHLIVDGRFTHAGDFLIPSILFLYIAGWIGWVGRSYLIEIRESKNP 118          
BLAST of FC920499 vs. ExPASy Swiss-Prot
Match: PSAF_MASLA (Photosystem I reaction center subunit III OS=Mastigocladus laminosus GN=psaF PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 49/112 (43.75%), Postives = 61/112 (54.46%), Query Frame = 2
Query:  305 PAVADISGLTPCKESKQFAKREKQQLKKLESSPKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAI 640
            PA A  + L PC ES  F +R  Q  +   + P                 E  K+RF+ Y +   LCG +GLPHLIV G   H G+F+ P +LFLYIAGWIGWVGR+YL  I
Sbjct:   20 PAQALGADLVPCSESPAFQQRA-QVARNTTADP-----------------ESGKKRFERYSQ--ALCGPEGLPHLIVDGRLDHAGDFLIPSILFLYIAGWIGWVGRAYLQTI 111          
BLAST of FC920499 vs. ExPASy Swiss-Prot
Match: PSAF_ANAVT (Photosystem I reaction center subunit III OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=psaF PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 46/112 (41.07%), Postives = 58/112 (51.79%), Query Frame = 2
Query:  305 PAVADISGLTPCKESKQFAKREKQQLKKLESSPKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAI 640
            PA A  + LTPC E+  F    K                   A    A  +  ++RF+ Y +   LCG +G PHLIV G     G+F+ P +LFLYIAGWIGWVGR+YL AI
Sbjct:   20 PAKALGADLTPCAENPAFQALAKN------------------ARNTTADPQSGQKRFERYSQ--ALCGPEGYPHLIVDGRLDRAGDFLIPSILFLYIAGWIGWVGRAYLQAI 111          
BLAST of FC920499 vs. ExPASy Swiss-Prot
Match: PSAF_ANASP (Photosystem I reaction center subunit III OS=Anabaena sp. (strain PCC 7120) GN=psaF PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 46/112 (41.07%), Postives = 58/112 (51.79%), Query Frame = 2
Query:  305 PAVADISGLTPCKESKQFAKREKQQLKKLESSPKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAI 640
            PA A  + LTPC E+  F    K                   A    A  +  ++RF+ Y +   LCG +G PHLIV G     G+F+ P +LFLYIAGWIGWVGR+YL AI
Sbjct:   20 PAKALGADLTPCAENPAFQALAKN------------------ARNTTADPQSGQKRFERYSQ--ALCGPEGYPHLIVDGRLDRAGDFLIPSILFLYIAGWIGWVGRAYLQAI 111          
BLAST of FC920499 vs. ExPASy Swiss-Prot
Match: PSAF_GLOVI (Photosystem I reaction center subunit III OS=Gloeobacter violaceus GN=psaF PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 40/104 (38.46%), Postives = 56/104 (53.85%), Query Frame = 2
Query:  335 PCKESKQFAKREKQQLKKLESSPKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISG 646
            P K  K     ++ + ++LE++ K  A D  P    +A    TK++F+ Y      CG DG PHLI SG     G+F+ P +LFL+IAG +GW GR YL    G
Sbjct:   37 PLKLCKDVPAYQELKTQRLEAAQKAQA-DGKPVTFNEAG---TKQKFERYDT--AYCGQDGYPHLITSGQLDRAGDFLIPSVLFLWIAGALGWAGRLYLAESKG 134          
The following BLAST results are available for this feature:
BLAST of FC920499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PSAF_GRATL2.383e-2952.99Photosystem I reaction center subunit III OS=Graci... [more]
PSAF_CYACA4.970e-2755.34Photosystem I reaction center subunit III OS=Cyani... [more]
PSAF_SYNP68.211e-2249.57Photosystem I reaction center subunit III OS=Synec... [more]
PSAF_THEEB1.311e-1945.69Photosystem I reaction center subunit III OS=Therm... [more]
PSAF_SYNEN1.311e-1945.69Photosystem I reaction center subunit III OS=Synec... [more]
PSAF_SYNY31.039e-1640.83Photosystem I reaction center subunit III OS=Synec... [more]
PSAF_MASLA3.022e-1643.75Photosystem I reaction center subunit III OS=Masti... [more]
PSAF_ANAVT4.825e-1441.07Photosystem I reaction center subunit III OS=Anaba... [more]
PSAF_ANASP4.825e-1441.07Photosystem I reaction center subunit III OS=Anaba... [more]
PSAF_GLOVI4.993e-1138.46Photosystem I reaction center subunit III OS=Gloeo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32009C02EF RVDevelop1 Citrus clementina cDNA clone C32009C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920499 ID=FC920499; Name=FC920499; organism=Citrus clementina; type=EST; length=705bp
GATTTCACGTCCATCTCCGCTTCTCCATTAGACACTCACACACACACACA
CTCTCACCCTGAAAGAAAAGAAGAAAAGGAAAAAGAAGATGTCTCTGACA
ATTCCAACAAATCTTTCAAAACCCCTATTGAAGCCAAGATCAAACTCTCA
GTTGAGCCATGCAAAATTATCGAAACAAATGATCACGTGCTCTTCTTCCG
CTGGTTCTGAAGAGACTTCTTCTTCTTCTGGCAAGGCCGCCAAGCCGCTC
CAGGCTTTCTCAGCAGCCCTTGCACTCTCCTCAATTCTGCTATCAGCCCC
ACAGCCCGCAGTTGCCGACATCAGCGGCCTCACCCCCTGCAAAGAGTCCA
AACAATTCGCCAAGCGCGAGAAGCAGCAGCTCAAGAAGCTCGAGTCTTCA
CCAAAACTGTACGCTCCCGACAGCGCCCCGGCTCTCGCAATCAAAGCCAC
CATGGAGAAGACAAAACGGCGGTTTGACAACTACGGGAAGTACGGGTTGC
TGTGCGGGTCAGATGGGTTGCCGCATCTGATTGTGAGCGGTGACCAGAGG
CACTGGGGTGAGTTTATCACTCCGGGGTTGTTGTTTTTGTACATAGCTGG
ATGGATCGGGTGGGTTGGCAGAAGCTACTTGATCGCCATTAGCGGGGAAA
AGAAGCCGCCATGAAGGAGATCATCATTGATGTTCCTTTGGCTTCCAGGN
TGGTC
back to top