FC920499

Overview
NameFC920499
Unique NameFC920499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920499_ssr37 microsatellite FC920499_ssr37:37..50. BLAST: Citrus ESTs to Prunus persica proteins V1
FC920499_ssr216 microsatellite FC920499_ssr216:216..227. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13253 contig Ccv1_Contig13253:1..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC920499 vs. ExPASy Swiss-Prot
Match: PSAF_PROMA (Photosystem I reaction center subunit III OS=Prochlorococcus marinus GN=psaF PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 41/121 (33.88%), Postives = 55/121 (45.45%), Query Frame = 2 
Query:  323 SGLTPCKESKQFAKREKQQLKKLESSPKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSG---------DQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKP 658
            S LT C E+ +F +R  Q                       AT  K   RF+ Y K    CG DGLPHL+++          ++ H G+ + PG +F+Y+AG IGW GR YL A    K P
Sbjct:   40 SALTTCSENTRFNERASQ-----------------------ATTPKDIARFERYSKAS--CGDDGLPHLVIAATIEPWGALANRHHEGDILIPGHIFIYVAGIIGWSGREYLRASKKTKNP 135
The following BLAST results are available for this feature:
BLAST of FC920499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PSAF_PROMA8.517e-1133.88Photosystem I reaction center subunit III OS=Proch... [more]

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Properties
Property NameValue
Genbank descriptionC32009C02EF RVDevelop1 Citrus clementina cDNA clone C32009C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920499 ID=FC920499; Name=FC920499; organism=Citrus clementina; type=EST; length=705bp
GATTTCACGTCCATCTCCGCTTCTCCATTAGACACTCACACACACACACA
CTCTCACCCTGAAAGAAAAGAAGAAAAGGAAAAAGAAGATGTCTCTGACA
ATTCCAACAAATCTTTCAAAACCCCTATTGAAGCCAAGATCAAACTCTCA
GTTGAGCCATGCAAAATTATCGAAACAAATGATCACGTGCTCTTCTTCCG
CTGGTTCTGAAGAGACTTCTTCTTCTTCTGGCAAGGCCGCCAAGCCGCTC
CAGGCTTTCTCAGCAGCCCTTGCACTCTCCTCAATTCTGCTATCAGCCCC
ACAGCCCGCAGTTGCCGACATCAGCGGCCTCACCCCCTGCAAAGAGTCCA
AACAATTCGCCAAGCGCGAGAAGCAGCAGCTCAAGAAGCTCGAGTCTTCA
CCAAAACTGTACGCTCCCGACAGCGCCCCGGCTCTCGCAATCAAAGCCAC
CATGGAGAAGACAAAACGGCGGTTTGACAACTACGGGAAGTACGGGTTGC
TGTGCGGGTCAGATGGGTTGCCGCATCTGATTGTGAGCGGTGACCAGAGG
CACTGGGGTGAGTTTATCACTCCGGGGTTGTTGTTTTTGTACATAGCTGG
ATGGATCGGGTGGGTTGGCAGAAGCTACTTGATCGCCATTAGCGGGGAAA
AGAAGCCGCCATGAAGGAGATCATCATTGATGTTCCTTTGGCTTCCAGGN
TGGTC
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