FC920500

Overview
NameFC920500
Unique NameFC920500
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920500 vs. ExPASy Swiss-Prot
Match: PER1_WHEAT (Peroxidase OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 68/183 (37.16%), Postives = 91/183 (49.73%), Query Frame = 3
Query:  144 LVMNFYKDTCPQAEDIIKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFG-MRNFRYIENIKEAVERECPGVVSCADILALSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 689
            L   FY  +CP+A   IK  V            S LR  FHDC    CDAS+LL     T  E+    + G +R F  I+NIK  +E  C   VSCADIL ++ RD VVALGGP   +  GRRD   + A +    LP  + S S +   F    ++   +VAL G+H++G+  C     R+Y
Sbjct:   25 LSSTFYDTSCPRALVAIKSGVAAAVSSDPRMGASLLRLHFHDCF--GCDASVLL-----TGMEQNAGPNVGSLRGFGVIDNIKTQLESVCKQTVSCADILTVAARDSVVALGGPSWTVPLGRRDSTTASASLANSDLPGPSSSRSQLEAAFLKKNLNTVDMVALSGAHTIGKAQCSNFRTRIY 200          
BLAST of FC920500 vs. ExPASy Swiss-Prot
Match: PER1_MAIZE (Peroxidase 1 OS=Zea mays GN=PER1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 63/186 (33.87%), Postives = 96/186 (51.61%), Query Frame = 3
Query:  144 LVMNFYKDTCPQAEDIIKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMD---RSFGMRNFRYIENIKEAVERECPGVVSCADILALSGRDGVVALGGPYIPLKTGRRDGRKSRA-EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 689
            L + FY  +CP AE ++++ V   + +    A   +R  FHDC V+ CD S+LL +      + E D    +  +R F  I+  K AVE+ CP  VSCADI+A + RD +   G     +  GRRDGR S A E ++  LP    +   + + F A  +    +V L G+H+VGR+ C     R++
Sbjct:   35 LRVGFYDTSCPNAEALVRQAVAAAFAKDAGIAAGLIRLHFHDCFVRGCDGSVLL-TVNPGGGQTERDALPNNPSLRGFDVIDAAKTAVEQSCPRTVSCADIVAFAARDSISLTGSVSYQVPAGRRDGRVSNATETVD--LPPPTSTAQSLTDLFKAKELSVEDMVVLSGAHTVGRSFCASFFKRVW 217          
BLAST of FC920500 vs. ExPASy Swiss-Prot
Match: PER69_ARATH (Peroxidase 69 OS=Arabidopsis thaliana GN=PER69 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22
Identity = 64/172 (37.21%), Postives = 89/172 (51.74%), Query Frame = 3
Query:  150 MNFYKDTCPQAEDIIKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILALSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHC 665
            + FY + C   E I++  V+   +     A   LR  FHDC V  CD S+LL       SE+    +  +R F  IE  K  +E+ CP  VSCADIL L+ RD VV  GG    +  GR DGR S+A   +  LP  +DS++   + FAA  ++   LV L+G H++G   C
Sbjct:   39 VGFYGNRCRNVESIVRSVVQSHVRSIPANAPGILRMHFHDCFVHGCDGSVLLAGNT---SERTAVPNRSLRGFEVIEEAKARLEKACPRTVSCADILTLAARDAVVLTGGQRWEVPLGRLDGRISQAS--DVNLPGPSDSVAKQKQDFAAKTLNTLDLVTLVGGHTIGTAGC 205          
BLAST of FC920500 vs. ExPASy Swiss-Prot
Match: PERA_IPOBA (Anionic peroxidase OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.599e-18
Identity = 55/160 (34.38%), Postives = 80/160 (50.00%), Query Frame = 3
Query:  192 IKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEM-DRSFGMRNFRYIENIKEAVERECPGV-VSCADILALSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHC 665
            +KE V            S +R  FHDC V  CDA LLL+ T     E+     +  +R F  IE  K+ V+ + P + VSCADIL+++ RD      G    +  GR+D R +        L   N++++  L +FAA G +   +VALLGSH++G   C
Sbjct:   75 VKEVVVAAINAEARMGASLIRLFFHDCFVDGCDAGLLLNDTATFTGEQTAAGNNNSVRGFAVIEQAKQNVKTQMPDMSVSCADILSIAARDSFEKFSGSTYTVTLGRKDARTANFTGANTQLVGPNENLTSQLTKFAAKGFNGTEMVALLGSHTIGFARC 234          
BLAST of FC920500 vs. ExPASy Swiss-Prot
Match: PER2_SOLLC (Suberization-associated anionic peroxidase 2 OS=Solanum lycopersicum GN=TAP2 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.084e-17
Identity = 49/144 (34.03%), Postives = 75/144 (52.08%), Query Frame = 3
Query:  243 SWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMD--RSFGMRNFRYIENIKEAVERECPGV-VSCADILALSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHC 665
            S +R  FHDC V  CD  +LLD    T + ++     +  +R F  I   K++V   CP + VSCADILA++ RD +  LGG    +  GR D   +        LP  +D+++V +++F+        +VAL G+H+VG   C
Sbjct:  102 SLIRLHFHDCFVDGCDGGILLDDINGTFTGEQNSPPNNNSVRGFEVIAQAKQSVVDSCPNISVSCADILAIAARDSLAKLGGQTYTVALGRSDATTANFSGAINQLPAPSDNLTVQIQKFSDKNFTVREMVALAGAHTVGFARC 245          
BLAST of FC920500 vs. ExPASy Swiss-Prot
Match: PER1_SOLLC (Suberization-associated anionic peroxidase 1 OS=Solanum lycopersicum GN=TAP1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.084e-17
Identity = 51/144 (35.42%), Postives = 74/144 (51.39%), Query Frame = 3
Query:  243 SWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMD--RSFGMRNFRYIENIKEAVERECPGV-VSCADILALSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHC 665
            S +R  FHDC V  CD  +LLD    T + ++     +   R +  I   K++V   CP V VSCADILA++ RD V  LGG    +  GR D R +        LP   D+++V +++F+        +VAL G+H+VG   C
Sbjct:  103 SLIRLHFHDCFVDGCDGGILLDDINGTFTGEQNSPPNANSARGYEVIAQAKQSVINTCPNVSVSCADILAIAARDSVAKLGGQTYSVALGRSDARTANFSGAINQLPAPFDNLTVQIQKFSDKNFTLREMVALAGAHTVGFARC 246          
BLAST of FC920500 vs. ExPASy Swiss-Prot
Match: PERX_SOLTU (Suberization-associated anionic peroxidase OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.938e-16
Identity = 50/144 (34.72%), Postives = 73/144 (50.69%), Query Frame = 3
Query:  243 SWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMD--RSFGMRNFRYIENIKEAVERECPGV-VSCADILALSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHC 665
            S +R  FHDC V  CD  +LLD    T + ++     +   R +  I   K++V   CP + VSCADILA++ RD V  LGG    +  GR D R +        LP   D+++V +++F         +VAL G+H+VG   C
Sbjct:  102 SLIRLHFHDCFVDGCDGGILLDDINGTFTGEQNSPPNANSARGYEVIAQAKQSVIDTCPNISVSCADILAIAARDSVAKLGGQTYNVALGRSDARTANFTGALTQLPAPFDNLTVQIQKFNDKNFTLREMVALAGAHTVGFARC 245          
BLAST of FC920500 vs. ExPASy Swiss-Prot
Match: PERN_IPOBA (Neutral peroxidase OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14
Identity = 50/163 (30.67%), Postives = 74/163 (45.40%), Query Frame = 3
Query:  192 IKEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMD-RSFGMRNFRYIENIKEAVERECPGV-VSCADILALSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKL 674
            +KE V            S +R  FHDC V  CD  +LL+ T     E+     S  +R F  I+  K   + +C    VSCAD+LA++ RD           +  GR+D R +        LP   D++S+   +FA  G +   +V L G+H+VG + C  L
Sbjct:   76 VKEIVDAAITAETRMGASLIRLHFHDCFVDGCDGGILLNDTANFTGEQGAPANSNSVRGFSVIDQAKRNAQTKCADTPVSCADVLAIAARDAFRKFTNQTYNITLGRQDARTANLTGANTQLPAPFDNLSIQTAKFADKGFNQREMVVLAGAHTVGFSRCAVL 238          
The following BLAST results are available for this feature:
BLAST of FC920500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PER1_WHEAT3.747e-2237.16Peroxidase OS=Triticum aestivum PE=2 SV=1[more]
PER1_MAIZE3.747e-2233.87Peroxidase 1 OS=Zea mays GN=PER1 PE=1 SV=1[more]
PER69_ARATH8.347e-2237.21Peroxidase 69 OS=Arabidopsis thaliana GN=PER69 PE=... [more]
PERA_IPOBA5.599e-1834.38Anionic peroxidase OS=Ipomoea batatas PE=1 SV=1[more]
PER2_SOLLC8.084e-1734.03Suberization-associated anionic peroxidase 2 OS=So... [more]
PER1_SOLLC8.084e-1735.42Suberization-associated anionic peroxidase 1 OS=So... [more]
PERX_SOLTU8.938e-1634.72Suberization-associated anionic peroxidase OS=Sola... [more]
PERN_IPOBA2.875e-1430.67Neutral peroxidase OS=Ipomoea batatas PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32009C03EF RVDevelop1 Citrus clementina cDNA clone C32009C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920500 ID=FC920500; Name=FC920500; organism=Citrus clementina; type=EST; length=711bp
GAAAACCAAGGTTGGTCACCTTTAGTGAGTGAAGAGTAGAAGAGACAATG
GGTACGAAAGCTGTCTTCTTGCTTTTAGCTTTGCTTTCCTTCTCAGCTGT
GTCTCTGAGGTCTGCTTTGGCAGAAAATGAAGAGGACCCAGGTCTTGTTA
TGAATTTTTACAAGGATACATGCCCTCAGGCCGAGGACATTATCAAGGAA
CAAGTTAAGCTTCTGTACAAGCGCCACAAGAACACTGCATTTTCTTGGCT
TAGAAACATTTTCCATGACTGTGCTGTCCAGTCTTGTGATGCTTCACTGC
TTCTGGACTCGACAAGAAAGACCTTGTCTGAGAAGGAAATGGACAGGAGC
TTTGGTATGAGGAACTTCAGGTACATTGAGAACATCAAAGAAGCTGTTGA
AAGAGAGTGCCCTGGTGTTGTTTCCTGTGCTGATATTCTTGCCCTGTCCG
GTAGAGATGGCGTTGTTGCGCTTGGAGGCCCTTACATTCCTCTCAAGACA
GGAAGAAGAGATGGTAGAAAAAGCAGAGCAGAGATACTTGAGCAGTATCT
CCCAGATCACAATGACAGCATGTCTGTTGTTCTTGAGAGGTTTGCAGCCA
TTGGCATTGACGCCCCTGGACTTGTTGCTCTGCTAGGATCTCACAGTGTT
GGCAGAACTCATTGTGTGAAGCTGGTGCACCGTCTGTACCCAGAAGTTGA
CCCTGCACTGA
back to top