FC920504

Overview
NameFC920504
Unique NameFC920504
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920504 vs. ExPASy Swiss-Prot
Match: CSK21_XENLA (Casein kinase II subunit alpha OS=Xenopus laevis GN=csnk2a1 PE=2 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 8.475e-57
Identity = 101/162 (62.35%), Postives = 123/162 (75.93%), Query Frame = 1
Query:  250 PAMSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERCXXXXXXXXXXXXXXXXXXXLQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGNMHRDVKPHNXMID 735
            P  S+ARVYTDVN  RP++YWDYES  V+WG+QDDY++VRK+GRGKYSEVFE IN+  NE+                    L+NL GGPN++ L DIV+D  S+TP+L+FE+VN+TDFK LY TLTDYDIR+Y+YE+LKALDYCHS G MHRDVKPHN MID
Sbjct:    4 PVPSRARVYTDVNTHRPRDYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMID 165          
BLAST of FC920504 vs. ExPASy Swiss-Prot
Match: CSK21_RABIT (Casein kinase II subunit alpha OS=Oryctolagus cuniculus GN=CSNK2A1 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.466e-56
Identity = 101/162 (62.35%), Postives = 121/162 (74.69%), Query Frame = 1
Query:  250 PAMSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERCXXXXXXXXXXXXXXXXXXXLQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGNMHRDVKPHNXMID 735
            P  S+ RVYTDVN  RP+EYWDYES  V+WG+QDDY++VRK+GRGKYSEVFE IN+  NE+                    L+NL GGPN++ L DIV+D  S+TP+L FE+VN+TDFK LY TLTDYDIR+Y+YE+LKALDYCHS G MHRDVKPHN MID
Sbjct:    4 PVPSRVRVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPASRTPALAFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMID 165          
BLAST of FC920504 vs. ExPASy Swiss-Prot
Match: CSK2A_SPOFR (Casein kinase II subunit alpha OS=Spodoptera frugiperda PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.074e-55
Identity = 99/159 (62.26%), Postives = 119/159 (74.84%), Query Frame = 1
Query:  259 SKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERCXXXXXXXXXXXXXXXXXXXLQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGNMHRDVKPHNXMID 735
            S+ARVY DVN  RP+EYWDYES  V WG+Q+DY++VRK+GRGKYSEVFE IN+  NE+C                   L+NL GG N++ L  +V+D  S+TP+LIFE+VN+TDFK LY TL+DYDIRYY+YELLKALDYCHS G MHRDVKPHN MID
Sbjct:    7 SRARVYADVNSQRPREYWDYESYVVDWGNQEDYQLVRKLGRGKYSEVFEAINITNNEKCVVKILKPVKKKKIKREIKILENLRGGTNIITLQAVVKDPVSRTPALIFEHVNNTDFKQLYQTLSDYDIRYYLYELLKALDYCHSMGIMHRDVKPHNVMID 165          
BLAST of FC920504 vs. ExPASy Swiss-Prot
Match: CSK2A_SCHPO (Casein kinase II subunit alpha OS=Schizosaccharomyces pombe GN=cka1 PE=2 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 7.933e-55
Identity = 100/162 (61.73%), Postives = 120/162 (74.07%), Query Frame = 1
Query:  250 PAMSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERCXXXXXXXXXXXXXXXXXXXLQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGNMHRDVKPHNXMID 735
            P +S +RVY  VN   P+EYWDYE++   +G QD+YE++RKVGRGKYSEVFEG+NV  N +C                   LQNL GGPN++ LLDIVRD  SKTPSLIFE+V++ DF+ LYPTL+DYDIRYY YELLKALD+CHS+G MHRDVKPHN MID
Sbjct:    8 PVVSVSRVYAHVNEEMPREYWDYENMQEVFGYQDNYEIIRKVGRGKYSEVFEGLNVLNNSKCIIKVLKPVKYKKIKREIKILQNLAGGPNIISLLDIVRDPESKTPSLIFEFVDNIDFRTLYPTLSDYDIRYYSYELLKALDFCHSRGIMHRDVKPHNVMID 169          
BLAST of FC920504 vs. ExPASy Swiss-Prot
Match: CSK2A_DROME (Casein kinase II subunit alpha OS=Drosophila melanogaster GN=CkIIalpha PE=1 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 7.933e-55
Identity = 99/159 (62.26%), Postives = 119/159 (74.84%), Query Frame = 1
Query:  259 SKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERCXXXXXXXXXXXXXXXXXXXLQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGNMHRDVKPHNXMID 735
            S ARVYTDVN  +P EYWDYE+  V WG+QDDY++VRK+GRGKYSEVFE IN+ T E+C                   L+NL GG N++ LL +V+D  S+TP+LIFE+VN+TDFK LY TLTDY+IRYY++ELLKALDYCHS G MHRDVKPHN MID
Sbjct:    5 SAARVYTDVNAHKPDEYWDYENYVVDWGNQDDYQLVRKLGRGKYSEVFEAINITTTEKCVVKILKPVKKKKIKREIKILENLRGGTNIITLLAVVKDPVSRTPALIFEHVNNTDFKQLYQTLTDYEIRYYLFELLKALDYCHSMGIMHRDVKPHNVMID 163          
BLAST of FC920504 vs. ExPASy Swiss-Prot
Match: CSK2A_NEUCR (Casein kinase II subunit alpha OS=Neurospora crassa GN=cka PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.937e-54
Identity = 97/157 (61.78%), Postives = 116/157 (73.89%), Query Frame = 1
Query:  265 ARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERCXXXXXXXXXXXXXXXXXXXLQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGNMHRDVKPHNXMID 735
            ARVY DVN   P+ YWDY+S+ + WG  ++YEVVRK+GRGKYSEVFEGINV   ++C                   LQNL GGPN+V LLD+VRD  SKTPSLIFEYVN+T+F+ LYP   D+D+RYYI+ELLKALD+CHS+G MHRDVKPHN MID
Sbjct:    2 ARVYADVNQNMPRAYWDYDSVNISWGVLENYEVVRKIGRGKYSEVFEGINVVNYQKCVIKVLKPVKKKKIKREIKILQNLAGGPNIVALLDVVRDSQSKTPSLIFEYVNNTEFRTLYPRFNDFDVRYYIFELLKALDFCHSKGIMHRDVKPHNVMID 158          
BLAST of FC920504 vs. ExPASy Swiss-Prot
Match: CSK22_BOVIN (Casein kinase II subunit alpha' OS=Bos taurus GN=CSNK2A2 PE=1 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 3.937e-54
Identity = 98/161 (60.87%), Postives = 120/161 (74.53%), Query Frame = 1
Query:  253 AMSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERCXXXXXXXXXXXXXXXXXXXLQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGNMHRDVKPHNXMID 735
            A S+ARVY +VN LR +EYWDYE+    WG+QDDY++VRK+GRGKYSEVFE IN+  NER                    L+NL GG N++KL+D V+D  SKTP+L+FEY+N+TDFK LY  LTD+DIR+Y+YELLKALDYCHS+G MHRDVKPHN MID
Sbjct:    6 ARSRARVYAEVNSLRSREYWDYEAHVPSWGNQDDYQLVRKLGRGKYSEVFEAINITNNERVVVKILKPVKKKKIKREVKILENLRGGTNIIKLIDTVKDPVSKTPALVFEYINNTDFKQLYQILTDFDIRFYMYELLKALDYCHSKGIMHRDVKPHNVMID 166          
BLAST of FC920504 vs. ExPASy Swiss-Prot
Match: CSK22_MOUSE (Casein kinase II subunit alpha' OS=Mus musculus GN=Csnk2a2 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.142e-54
Identity = 100/166 (60.24%), Postives = 123/166 (74.10%), Query Frame = 1
Query:  241 IPLPAM-SKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERCXXXXXXXXXXXXXXXXXXXLQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGNMHRDVKPHNXMID 735
            +P PA  S+ARVY +VN LR +EYWDYE+    WG+QDDY++VRK+GRGKYSEVFE IN+  NER                    L+NL GG N++KL+D V+D  SKTP+L+FEY+N+TDFK LY  LTD+DIR+Y+YELLKALDYCHS+G MHRDVKPHN MID
Sbjct:    1 MPGPAAGSRARVYAEVNSLRSREYWDYEAHVPSWGNQDDYQLVRKLGRGKYSEVFEAINITNNERVVVKILKPVKKKKIKREVKILENLRGGTNIIKLIDTVKDPVSKTPALVFEYINNTDFKQLYQILTDFDIRFYMYELLKALDYCHSKGIMHRDVKPHNVMID 166          
BLAST of FC920504 vs. ExPASy Swiss-Prot
Match: CSK22_HUMAN (Casein kinase II subunit alpha' OS=Homo sapiens GN=CSNK2A2 PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.142e-54
Identity = 100/166 (60.24%), Postives = 123/166 (74.10%), Query Frame = 1
Query:  241 IPLPAM-SKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERCXXXXXXXXXXXXXXXXXXXLQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGNMHRDVKPHNXMID 735
            +P PA  S+ARVY +VN LR +EYWDYE+    WG+QDDY++VRK+GRGKYSEVFE IN+  NER                    L+NL GG N++KL+D V+D  SKTP+L+FEY+N+TDFK LY  LTD+DIR+Y+YELLKALDYCHS+G MHRDVKPHN MID
Sbjct:    1 MPGPAAGSRARVYAEVNSLRSREYWDYEAHVPSWGNQDDYQLVRKLGRGKYSEVFEAINITNNERVVVKILKPVKKKKIKREVKILENLRGGTNIIKLIDTVKDPVSKTPALVFEYINNTDFKQLYQILTDFDIRFYMYELLKALDYCHSKGIMHRDVKPHNVMID 166          
BLAST of FC920504 vs. ExPASy Swiss-Prot
Match: CSK2A_CAEEL (Casein kinase II subunit alpha OS=Caenorhabditis elegans GN=kin-3 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.552e-53
Identity = 96/162 (59.26%), Postives = 122/162 (75.31%), Query Frame = 1
Query:  250 PAMSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNTNERCXXXXXXXXXXXXXXXXXXXLQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGNMHRDVKPHNXMID 735
            P  S+ARVY +VN  RP+EYWDYE+  ++WG  DDY++VRK+GRGKYSEVFEG  ++T+E+                    L+NL GG N++ LLD+V+D  S+TP+LIFE+VN++DFK LY TL+DYDIRYY+YELLKALD+CHSQG MHRDVKPHN MID
Sbjct:    3 PIPSRARVYAEVNPSRPREYWDYEAHMIEWGQIDDYQLVRKLGRGKYSEVFEGFKMSTDEKVVVKILKPVKKKKIKREIKILENLRGGTNIITLLDVVKDPISRTPALIFEHVNNSDFKQLYQTLSDYDIRYYLYELLKALDFCHSQGIMHRDVKPHNVMID 164          
The following BLAST results are available for this feature:
BLAST of FC920504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
CSK21_XENLA8.475e-5762.35Casein kinase II subunit alpha OS=Xenopus laevis G... [more]
CSK21_RABIT2.466e-5662.35Casein kinase II subunit alpha OS=Oryctolagus cuni... [more]
CSK2A_SPOFR6.074e-5562.26Casein kinase II subunit alpha OS=Spodoptera frugi... [more]
CSK2A_SCHPO7.933e-5561.73Casein kinase II subunit alpha OS=Schizosaccharomy... [more]
CSK2A_DROME7.933e-5562.26Casein kinase II subunit alpha OS=Drosophila melan... [more]
CSK2A_NEUCR3.937e-5461.78Casein kinase II subunit alpha OS=Neurospora crass... [more]
CSK22_BOVIN3.937e-5460.87Casein kinase II subunit alpha' OS=Bos taurus GN=C... [more]
CSK22_MOUSE5.142e-5460.24Casein kinase II subunit alpha' OS=Mus musculus GN... [more]
CSK22_HUMAN5.142e-5460.24Casein kinase II subunit alpha' OS=Homo sapiens GN... [more]
CSK2A_CAEEL2.552e-5359.26Casein kinase II subunit alpha OS=Caenorhabditis e... [more]

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Properties
Property NameValue
Genbank descriptionC32009C07EF RVDevelop1 Citrus clementina cDNA clone C32009C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920504 ID=FC920504; Name=FC920504; organism=Citrus clementina; type=EST; length=736bp
GAAGCCAAACACAAACACCCAGCAGTACTTGCCGCACAGGTACAGGTACT
TCCCCTCCGCTTCTTGTTAGCGTGCGCCGTTCTTGCCTTGCGTGCGCCCA
TCGCGCACCATCCTATCCTGCGCACCCCCTGCCGAAGCTCCACATACAAT
CTTAACATCATCACAGATACTATCGCCGCTACTACCGTTGTCTACGAGGG
CGCTATCATCGATAAGATCGAGGAACGAAATCTCGCCGAGATCCCGCTGC
CGGCGATGTCGAAGGCTCGAGTTTATACCGACGTTAACGTTCTTCGGCCT
AAGGAATACTGGGATTACGAGTCGCTCACTGTTCAATGGGGTGATCAAGA
TGATTATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAATACAGTGAAGTTT
TTGAAGGCATAAATGTGAATACAAATGAGCGATGCATCATTAAGATCCTC
AAGCCTGTTAAGAAAAAGAAGATAAAGAGGGAGATAAAAATACTTCAGAA
CCTCTGTGGTGGTCCAAATGTTGTAAAGCTTCTTGATATTGTTAGAGATC
AGCACTCAAAAACTCCTAGCTTGATATTTGAGTATGTGAACAGCACTGAT
TTTAAAGTTTTGTACCCCACATTGACTGACTATGACATACGCTATTACAT
ATACGAGCTTCTGAAGGCATTAGATTACTGCCATTCACAGGGAAATATGC
ATAGAGATGTCAAGCCTCACAATGNTATGATAGACC
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