FC920515

Overview
NameFC920515
Unique NameFC920515
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920515 vs. ExPASy Swiss-Prot
Match: KCS9_ARATH (3-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana GN=KCS9 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25
Identity = 62/163 (38.04%), Postives = 99/163 (60.74%), Query Frame = 3
Query:  189 LQKRGQCCYMLAYECYKPCD--ETRRLDTESCARVVWRNKKLGLEEYRFQLKNMVSSGIGEETYGPRNVVEGREESPSLAEAFSEMDEIIFDTLDKLFARTDISPSEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFR 671
            +  R +  Y++ Y CY P +  + +       ++++    +  LE   FQ K +  SG+GEETY P   +      P++  A  E ++++F  LDKLF  T I+P +I VLVVN SLF+P PSL++ I+N+Y LR ++K+FNL GMGCSA V+++DL + + +
Sbjct:  101 IMSRPRSVYLVDYSCYLPPESLQVKYQKFMDHSKLIEDFNESSLE---FQRKILERSGLGEETYLPE-ALHCIPPRPTMMAAREESEQVMFGALDKLFENTKINPRDIGVLVVNCSLFNPTPSLSAMIVNKYKLRGNVKSFNLGGMGCSAGVISIDLAKDMLQ 259          
BLAST of FC920515 vs. ExPASy Swiss-Prot
Match: KCS4_ARATH (3-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana GN=KCS4 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.392e-24
Identity = 63/157 (40.13%), Postives = 95/157 (60.51%), Query Frame = 3
Query:  213 YMLAYECYKPCDETRRLDTESCARVVWRNKKLGLEE---YRFQLKNMVSSGIGEETYGPRNVVEGREESP---SLAEAFSEMDEIIFDTLDKLFARTDISPSEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQL 665
            Y++ + CY P D  +       AR +  ++  G  +     FQ K +  SG+GE+TY P    E     P   S+A A  E ++++F  LD LFA T++ P +I +LVVN SLF+P PSL++ I+N+Y LR +I+++NL GMGCSA V+AVDL + +
Sbjct:  113 YLVDFSCYLPPDHLKA----PYARFMEHSRLTGDFDDSALEFQRKILERSGLGEDTYVP----EAMHYVPPRISMAAAREEAEQVMFGALDNLFANTNVKPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSYNLGGMGCSAGVIAVDLAKDM 261          
BLAST of FC920515 vs. ExPASy Swiss-Prot
Match: KCS17_ARATH (3-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana GN=KCS17 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 9.025e-24
Identity = 55/158 (34.81%), Postives = 99/158 (62.66%), Query Frame = 3
Query:  213 YMLAYECYKPCDETRRLDTESCARVVW--RNKKLGL---EEYRFQLKNMVSSGIGEETYGPRNVVEGREESPSLAEAFSEMDEIIFDTLDKLFARTDISPSEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFR 671
            ++L + CYKP           C R  +  R++++G+   +   FQ K +  SG+G++TY P  ++     +P ++EA  E + ++F  +D +  +T ++P +I +LVVN SLF+P PSL++ I+N+Y LR ++ ++NL GMGCSA ++++DL +QL +
Sbjct:  106 FLLDFACYKPDSSL------ICTRETFMDRSQRVGIFTEDNLAFQQKILERSGLGQKTYFPEALLRV-PPNPCMSEARKEAETVMFGAIDAVLEKTGVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRGNVLSYNLGGMGCSAGLISIDLAKQLLQ 256          
BLAST of FC920515 vs. ExPASy Swiss-Prot
Match: KCS19_ARATH (3-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana GN=KCS19 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.626e-23
Identity = 55/158 (34.81%), Postives = 97/158 (61.39%), Query Frame = 3
Query:  213 YMLAYECYKPCDETRRLDTESCARVVW--RNKKLGL---EEYRFQLKNMVSSGIGEETYGPRNVVEGREESPSLAEAFSEMDEIIFDTLDKLFARTDISPSEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFR 671
            ++L + CYKP           C R  +  R++++G+   +   FQ K +  SG+G++TY P  ++     +P + EA  E + ++F  +D +  +T + P +I +LVVN SLF+P PSL++ I+N+Y LR +I ++NL GMGCSA ++++DL +Q+ +
Sbjct:  112 FLLDFSCYKPDPSL------ICTRETFMDRSQRVGIFTEDNLAFQQKILERSGLGQKTYFPEALLRV-PPNPCMEEARKEAETVMFGAIDAVLEKTGVKPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRGNILSYNLGGMGCSAGLISIDLAKQMLQ 262          
BLAST of FC920515 vs. ExPASy Swiss-Prot
Match: KCS8_ARATH (3-ketoacyl-CoA synthase 8 OS=Arabidopsis thaliana GN=KCS8 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.479e-23
Identity = 68/178 (38.20%), Postives = 98/178 (55.06%), Query Frame = 3
Query:  183 WVLQK--RGQCCYMLAYECYKPCDETR----------RLDTESCARVVWRNKKLGLEEYRFQLKNMVSSGIGEETYGPRNVVEGREESP---SLAEAFSEMDEIIFDTLDKLFARTDISPSEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFR 671
            W+L    R +  Y++ + CY P    +          R   E  A + W+NK+       FQ K +  SG+G+ETY P    EG +  P    +  +  E +E+IF  LD LF  T + P +I +LVVN S F+P PSL S I+N+Y LR++IK+ NL GMGCSA V+AVD+ + L +
Sbjct:   58 WILYMLTRPKPVYLVDFSCYLPPSHLKVSIQTLMGHARRARE--AGMCWKNKESD-HLVDFQEKILERSGLGQETYIP----EGLQCFPLQQGMGASRKETEEVIFGALDNLFRNTGVKPDDIGILVVNSSTFNPTPSLASMIVNKYKLRDNIKSLNLGGMGCSAGVIAVDVAKGLLQ 228          
BLAST of FC920515 vs. ExPASy Swiss-Prot
Match: KCS18_ARATH (3-ketoacyl-CoA synthase 18 OS=Arabidopsis thaliana GN=FAE1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 61/170 (35.88%), Postives = 93/170 (54.71%), Query Frame = 3
Query:  213 YMLAYECYKPCD--------------ETRRLDTESCARVVWRNKKLGLEEYRFQLKNMVSSGIGEETYGPRNVVEGREESPSLAEAFSEMDEIIFDTLDKLFARTDISPSEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFRTTK 680
            Y++ Y CY P                + R+ DT S  R V  +    L+   F  K    SG+G+ETY P  ++       + A +  E +++I   L+ LF  T ++P EI +LVVN S+F+P PSL++ ++N + LR++IK+FNL GMGCSA V+A+DL + L    K
Sbjct:   78 YLVDYSCYLPPPHLKVSVSKVMDIFYQIRKADTSS--RNVACDDPSSLD---FLRKIQERSGLGDETYSPEGLIHVPPRK-TFAASREETEKVIIGALENLFENTKVNPREIGILVVNSSMFNPTPSLSAMVVNTFKLRSNIKSFNLGGMGCSAGVIAIDLAKDLLHVHK 241          
BLAST of FC920515 vs. ExPASy Swiss-Prot
Match: KCS16_ARATH (3-ketoacyl-CoA synthase 16 OS=Arabidopsis thaliana GN=KCS16 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.468e-22
Identity = 63/171 (36.84%), Postives = 95/171 (55.56%), Query Frame = 3
Query:  189 LQKRGQCCYMLAYECYKPCDETRRLDTESCARV-------VWRNKKLGLEEYRFQLKNMVSSGIGEETYGPRNVVEGREESP---SLAEAFSEMDEIIFDTLDKLFARTDISPSEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFR 671
            L  R +  Y++ + CY P    +         V        W+ +   L +  F  K +  SG+G+ETY P    EG +  P   +LA +  E +E+I   +D LF  T ISPS+I +LVVN S F+P PSL+S ++N++ LR++IK+ NL GMGCSA V+A+D  + L +
Sbjct:   72 LMTRPKPVYLVDFSCYLPPSHLKASTQRIMQHVRLVREAGAWKQESDYLMD--FCEKILERSGLGQETYVP----EGLQTLPLQQNLAVSRIETEEVIIGAVDNLFRNTGISPSDIGILVVNSSTFNPTPSLSSILVNKFKLRDNIKSLNLGGMGCSAGVIAIDAAKSLLQ 236          
BLAST of FC920515 vs. ExPASy Swiss-Prot
Match: KCS7_ARATH (3-ketoacyl-CoA synthase 7 OS=Arabidopsis thaliana GN=KCS7 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.441e-21
Identity = 58/153 (37.91%), Postives = 91/153 (59.48%), Query Frame = 3
Query:  213 YMLAYECYKPCDETRRLDTESCARVVWRNKKLGLEEYRFQLKNMVSSGIGEETYGPRNVVEGREESPSLAEAFSEMDEIIFDTLDKLFARTDISPSEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFR 671
            Y++ + CY+P D  R     +    +  +     E    Q K +  SGI ++   P  V E    + S++ A  E  EI+F  +  LF++ +I P  ID+LV N SLF P+PS+TS IIN++ +R+DIK+F+LSGMGCSA +++V+LV+ L +
Sbjct:   48 YLIDFSCYQPPDFLRA-PVSNFIEHLTISGVFDQESLDLQQKILERSGISDDASVPATVHE-IPPNASISAAREETHEILFAIVQDLFSKHEIDPKSIDILVSNCSLFCPSPSITSMIINKFGMRSDIKSFSLSGMGCSAGILSVNLVKDLMK 198          
BLAST of FC920515 vs. ExPASy Swiss-Prot
Match: KCS20_ARATH (Probable 3-ketoacyl-CoA synthase 20 OS=Arabidopsis thaliana GN=KCS20 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.475e-21
Identity = 53/159 (33.33%), Postives = 97/159 (61.01%), Query Frame = 3
Query:  213 YMLAYECYKPCDETRRLDTESCARVVWRNKKLGLEEYRFQLKNMVSSGIGEETYGPRNVVEGREESPSLAEAFSEMDEIIFDTLDKLFARTDISPSEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFRTTKTAL 689
            Y+L + CY+  D + R+   +    ++ + KL  E   FQ + +  S +  +T  PR+++E   +  SL+    E    IF +++ L  +  +SP  ID+L+ N SL SP+PSL++ +IN++++R++IK+FNLSGMGC+A +++V+L   L +  + +L
Sbjct:   52 YLLDFTCYRAPD-SNRVPMSTLIETIYLDDKLDQESIDFQARILERSWLSNQTSIPRSLMEIPLKK-SLSSVKIETMTTIFTSVEDLLRKNKLSPRSIDILITNCSLHSPSPSLSAMVINKFHMRSNIKSFNLSGMGCAAGILSVNLANDLLQAHRGSL 208          
BLAST of FC920515 vs. ExPASy Swiss-Prot
Match: KCS14_ARATH (Probable 3-ketoacyl-CoA synthase 14 OS=Arabidopsis thaliana GN=KCS14 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.151e-21
Identity = 54/158 (34.18%), Postives = 92/158 (58.23%), Query Frame = 3
Query:  198 RGQCCYMLAYECYKPCDETRRLDTESCARVVWRNKKLGLEEYRFQLKNMVSSGIGEETYGPRNVVEGREESPSLAEAFSEMDEIIFDTLDKLFARTDISPSEIDVLVVNVSLFSPAPSLTSRIINRYNLRNDIKAFNLSGMGCSASVVAVDLVQQLFR 671
            R +  Y++ + C++P D  + + +E+   +    +    E  +F  + +  SG+G++TY PR ++     +PS+ EA  E + +IF  L+ LF +T I P E+ + +VN SLF+P PSL+S I+NRY L+ D+K +NLSG       ++VDL   L +
Sbjct:   56 RSKPVYLVDFSCHQPTDSCK-ISSETFFNMAKGAQLYTEETIQFMTRILNRSGLGDDTYSPRCMLTS-PPTPSMYEARHESELVIFGALNSLFKKTGIEPREVGIFIVNCSLFNPNPSLSSMIVNRYKLKTDVKTYNLSG-------ISVDLATNLLK 204          
The following BLAST results are available for this feature:
BLAST of FC920515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
KCS9_ARATH2.148e-2538.043-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana ... [more]
KCS4_ARATH1.392e-2440.133-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana ... [more]
KCS17_ARATH9.025e-2434.813-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana... [more]
KCS19_ARATH2.626e-2334.813-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana... [more]
KCS8_ARATH4.479e-2338.203-ketoacyl-CoA synthase 8 OS=Arabidopsis thaliana ... [more]
KCS18_ARATH4.952e-2235.883-ketoacyl-CoA synthase 18 OS=Arabidopsis thaliana... [more]
KCS16_ARATH6.468e-2236.843-ketoacyl-CoA synthase 16 OS=Arabidopsis thaliana... [more]
KCS7_ARATH1.441e-2137.913-ketoacyl-CoA synthase 7 OS=Arabidopsis thaliana ... [more]
KCS20_ARATH5.475e-2133.33Probable 3-ketoacyl-CoA synthase 20 OS=Arabidopsis... [more]
KCS14_ARATH7.151e-2134.18Probable 3-ketoacyl-CoA synthase 14 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC32009D10EF RVDevelop1 Citrus clementina cDNA clone C32009D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920515 ID=FC920515; Name=FC920515; organism=Citrus clementina; type=EST; length=720bp
CCGGGGGCTCATAAAAAAGTTCAAATTCGACTTCCTACGTAAAGAAAGAC
AGGGAAGTCTAGAGATTTTCTTTTTTTCTTTCCCTCCCTTCTCTCTTTGT
CAATTGAGTTATTTTTTTTTCTTTTATCATGGCATTATTGTACTTGTTAC
CTCTTTTTTATATCATTTTTCACTTGTATAAGTGGGTTCTTCAGAAAAGA
GGCCAATGCTGCTATATGCTTGCTTATGAGTGCTACAAGCCATGTGACGA
AACCAGGAGGCTTGACACTGAATCCTGTGCAAGAGTTGTTTGGAGAAACA
AGAAACTGGGGCTTGAAGAATACAGGTTTCAGTTAAAGAACATGGTCAGC
TCAGGCATCGGAGAGGAAACTTACGGCCCAAGAAACGTCGTTGAAGGCAG
AGAAGAGTCACCTTCTTTAGCTGAGGCATTTTCAGAAATGGATGAAATCA
TTTTTGACACACTTGACAAGCTCTTTGCAAGAACAGATATTTCTCCATCT
GAAATTGACGTTCTTGTCGTGAATGTGTCGCTATTTTCTCCTGCTCCTTC
TCTTACATCTCGAATTATAAATCGCTACAACCTGAGGAACGATATTAAGG
CCTTCAATTTATCCGGAATGGGCTGCAGTGCAAGCGTGGTAGCCGTTGAT
CTTGTGCAGCAGCTCTTCAGAACTACAAAAACAGCTTTGCATTGTTGTGA
GCACGAGTCCATGGGACCTA
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