FC920519

Overview
NameFC920519
Unique NameFC920519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:789..1467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_PSEMY (60 kDa chaperonin OS=Pseudomonas mendocina (strain ymp) GN=groL PE=3 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.200e-69
Identity = 134/224 (59.82%), Postives = 165/224 (73.66%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG   EN L VVEGMQFDRGY+SPYF+   + M  E E   LLLVDKKI+N R+L+ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +EVGL+L+    E LGNA +VVL KD TTI+     Q  +  RVAQIR  +E    DY++EKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMDKVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFINKPDTMVAELEGPLLLLVDKKISNIRELLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLESATLEHLGNAKRVVLNKDNTTIIDGAGAQADIEARVAQIRKQVEETSSDYDKEKLQERLAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_ALTMD (60 kDa chaperonin OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=groL PE=3 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.874e-69
Identity = 132/224 (58.93%), Postives = 170/224 (75.89%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG++ +N L VVEGMQFDRGY+SPYF+ + E   VE +N  +LLVDKKI+N R+L+  LE   +   P++IIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +E+GL L+KV  E LG A +VV+ KD TT+V     Q+A+  R AQI+  IE +  DY++EKL ER+AKLSGGVAVI+VGA TE
Sbjct:  163 AQAMEKVGKEGVITVEEGQALQNELDVVEGMQFDRGYLSPYFINNQENGTVELDNPFILLVDKKISNIRELLPTLEGVAKAGKPLMIIAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEIGLELEKVQLEDLGTAKRVVINKDNTTVVDGNGDQEAIEGRCAQIKGQIEESSSDYDKEKLQERLAKLSGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.874e-69
Identity = 131/223 (58.74%), Postives = 169/223 (75.78%), Query Frame = 2
Query:   11 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            AM KV + GV+T+EE KS    L VVEGMQ DRGY+SPYFVTD E++ V++EN ++L+ DKKI++ +DL+ VLE   R    +LIIAEDIE EALATLVVNK RG L +AA+KAPGFG+R+   L DIAILTGG +I +EVGL+L+ V  +++G   K+ + KD TTIV DG T + V KR+AQIR  +  ++ DY++EKL ERIAKL+GGVAVI+VGA TET
Sbjct:  163 AMDKVTKDGVITVEESKSLSTDLEVVEGMQIDRGYLSPYFVTDQERLVVDFENARILITDKKISSIQDLVPVLEKVARAGQSLLIIAEDIEGEALATLVVNKARGVLNVAAVKAPGFGDRRKAMLQDIAILTGGQLISEEVGLSLEMVDLDMMGIGRKISINKDNTTIVADGGTAEEVKKRIAQIRKQLGESDSDYDKEKLQERIAKLAGGVAVIKVGAATET 385          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_PROMH (60 kDa chaperonin OS=Proteus mirabilis (strain HI4320) GN=groL PE=3 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 3.753e-69
Identity = 135/224 (60.27%), Postives = 169/224 (75.45%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG   E+ L VVEGMQFDRGY+SPYF+   E    E EN  +LLVDKK++N R+L+ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILT GTVI +E+G+ L+K   E LG A +VV+ KDTTTI+     Q+A+S RVAQIR  IE+A  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AQAMEKVGKEGVITVEEGTGLEDELDVVEGMQFDRGYLSPYFINKPETGTAELENPFILLVDKKVSNIRELLPVLEGVAKANKPLLIIAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTNGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGLGEQEAISGRVAQIRQQIEDATSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_ALCBS (60 kDa chaperonin OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=groL PE=3 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 3.753e-69
Identity = 135/224 (60.27%), Postives = 169/224 (75.45%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG+S +N L VVEGMQFDRGY+SPYF+ + EKM VE E+  +LLVDKKI+N R+L+  LE+  +   P+LIIAEDIE EALATLVVN +RG +K AA+KAPGFG+R+   L DIAILTGGTVI +EVGL+L+    E LG A KV + K+ TTIV     Q  +  RV QIR  IEN+  DY++EKL ER+AKL+GGVAVI++GA TE
Sbjct:  162 AQAMEKVGQEGVITVEEGQSLQNELDVVEGMQFDRGYLSPYFINNQEKMQVELEDPYILLVDKKISNIRELLPALENVAKAGKPLLIIAEDIEGEALATLVVNNMRGIIKCAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLENASLEDLGTAKKVNIDKENTTIVDGAGQQADIDGRVEQIRKEIENSSSDYDKEKLQERVAKLAGGVAVIKIGAATE 385          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_CAMC5 (60 kDa chaperonin OS=Campylobacter curvus (strain 525.92) GN=groL PE=3 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 4.902e-69
Identity = 136/225 (60.44%), Postives = 167/225 (74.22%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            A AM KVG+ GV+T+EE KS E+ L VVEGMQFDRGY+SPYF+T++EKM VE  N  +LL DKKITN +DL+ VLE   +   P+LI+AEDIE EALATLVVNKLRG L I+A+KAPGFG+R+   L+DIAILTGG VI +E+G  L+    E LG AS VV+ KD TTIV     + A+  R+ QI+  I     DY++EKL ER+AKLSGGVAVI+VGA TET
Sbjct:  162 ADAMEKVGKDGVITVEEAKSIEDELNVVEGMQFDRGYLSPYFITNAEKMQVELSNPFILLFDKKITNLKDLLPVLEQIQKTGKPLLIVAEDIEGEALATLVVNKLRGVLNISAVKAPGFGDRRKAMLEDIAILTGGEVISEELGRTLESATLEDLGQASSVVIDKDNTTIVNGAGEKSAIDARINQIKAQIAETTSDYDKEKLQERLAKLSGGVAVIKVGAATET 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_SHEAM (60 kDa chaperonin OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=groL PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.402e-69
Identity = 132/224 (58.93%), Postives = 169/224 (75.45%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG++ EN L VVEGMQFDRGY+SPYF+   E  AVE +N  +LLVDKKI+N R+L+ +LE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +E+GL L+K   E LG A +VV+TKD TTI+     ++ +  RV QI+  IE    DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 ATAMEKVGKEGVITVEEGQALENELDVVEGMQFDRGYLSPYFINKPETGAVELDNPFVLLVDKKISNIRELLPILEGLAKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGNGAEEQIKARVGQIKQQIEETTSDYDREKLQERMAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_NITOC (60 kDa chaperonin OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=groL PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.402e-69
Identity = 128/224 (57.14%), Postives = 169/224 (75.45%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG   +N L VVEGMQFDRGY+SPYF+TD + MA + ++  +L+ DKKI+N RDL+ VLE   +   P+L+I+ED+E EALATLVVN +RG +K+ A+KAPGFG+R+   L+DIA+LTGGTVI +EVGL+LDKV  + LG A K+ + K+ TTIV    + D +  RV Q+R  IE A  DY++EKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMDKVGKEGVITVEEGSGLDNELEVVEGMQFDRGYLSPYFITDQQSMAADLDDPYILIHDKKISNIRDLLPVLESVAKAGKPLLVISEDVEGEALATLVVNTIRGIVKVCAVKAPGFGDRRKAMLEDIAVLTGGTVISEEVGLSLDKVTLDDLGRAKKITVNKENTTIVDGAGSADDIKARVEQVRIQIEEATSDYDKEKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_PSEU5 (60 kDa chaperonin OS=Pseudomonas stutzeri (strain A1501) GN=groL PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 8.361e-69
Identity = 133/224 (59.38%), Postives = 167/224 (74.55%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM +VG+ GV+T+EEG   EN L VVEGMQFDRGY+SPYF+   + M  E +N  LLLVDKKI+N R+L+ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +EVGL+L+    E LGNA +VVL K+ TTI+     Q  +  RVAQIR  IE+   DY++EKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMERVGKEGVITVEEGSGFENELSVVEGMQFDRGYLSPYFINKPDTMVAELDNPLLLLVDKKISNIRELLPVLEGVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLETATLEHLGNAKRVVLNKENTTIIDGAGAQADIEARVAQIRKQIEDTTSDYDKEKLQERLAKLAGGVAVIKVGAGTE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_PSEA6 (60 kDa chaperonin OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=groL PE=3 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.092e-68
Identity = 130/224 (58.04%), Postives = 171/224 (76.34%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG+S +N L VVEGMQFDRGY+SPYF+ + E   VE ++  +LLVDKK++N R+L+  LE   + + P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L D+A LTGGTVI +E+GL L+KV  E LG A +VV+ KD TT+V     ++A+  RVAQIR  IE +  DY++EKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMDKVGKEGVITVEEGQSLQNELEVVEGMQFDRGYLSPYFMNNQENGTVELDSPFILLVDKKVSNIRELLPTLEAVAKASKPLLIIAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDLATLTGGTVISEEIGLELEKVTLEDLGTAKRVVINKDNTTVVDGAGEEEAIQGRVAQIRAQIEESSSDYDKEKLQERLAKLAGGVAVIKVGAATE 386          
The following BLAST results are available for this feature:
BLAST of FC920519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_PSEMY2.200e-6959.8260 kDa chaperonin OS=Pseudomonas mendocina (strain... [more]
CH60_ALTMD2.874e-6958.9360 kDa chaperonin OS=Alteromonas macleodii (strain... [more]
CH601_TRIEI2.874e-6958.7460 kDa chaperonin 1 OS=Trichodesmium erythraeum (s... [more]
CH60_PROMH3.753e-6960.2760 kDa chaperonin OS=Proteus mirabilis (strain HI4... [more]
CH60_ALCBS3.753e-6960.2760 kDa chaperonin OS=Alcanivorax borkumensis (stra... [more]
CH60_CAMC54.902e-6960.4460 kDa chaperonin OS=Campylobacter curvus (strain ... [more]
CH60_SHEAM6.402e-6958.9360 kDa chaperonin OS=Shewanella amazonensis (strai... [more]
CH60_NITOC6.402e-6957.1460 kDa chaperonin OS=Nitrosococcus oceani (strain ... [more]
CH60_PSEU58.361e-6959.3860 kDa chaperonin OS=Pseudomonas stutzeri (strain ... [more]
CH60_PSEA61.092e-6858.0460 kDa chaperonin OS=Pseudoalteromonas atlantica (... [more]

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Properties
Property NameValue
Genbank descriptionC32009E02EF RVDevelop1 Citrus clementina cDNA clone C32009E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920519 ID=FC920519; Name=FC920519; organism=Citrus clementina; type=EST; length=679bp
CTCTGCCGGGGCCATGAGTAAAGTGGGACGTACGGGTGTGGTGACCCTTG
AAGAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAA
TTTGATCGTGGTTATATTTCTCCCTACTTCGTCACTGATAGTGAGAAAAT
GGCAGTTGAATATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTA
CCAATGCAAGGGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCA
TACCCAATTTTGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAAC
TCTTGTCGTGAACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAG
CTCCTGGTTTTGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATT
TTGACTGGAGGAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAA
AGTTGGCAAGGAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGG
ATACCACCACCATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAA
CGAGTGGCGCAAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGA
AAGGGAGAAGCTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTG
TCATACAGGTTGGAGCTCAAACTGAGACA
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