FC920519

Overview
NameFC920519
Unique NameFC920519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_OLEAN (60 kDa chaperonin OS=Oleispira antarctica GN=groL PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.690e-67
Identity = 129/224 (57.59%), Postives = 169/224 (75.45%), Query Frame = 2 
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEGK  E+ L VVEGMQFDRGY+SPYF+ + EKM VE EN  +LLVDKKI N ++L+ +LE+  +   P+LI+AED+E +ALATLVVN LRG  K+AA+KAPGFG+R+   L D+AILTGG VI +E+G++L+      LG ASKVV+ K+ T IV    T+ +V+ RV QIR  IE++  DY+ EKL ER+AKL+GGVAVI+VGA +E
Sbjct:  163 AEAMEKVGKEGVITVEEGKGLEDELDVVEGMQFDRGYLSPYFINNQEKMTVEMENPLILLVDKKIDNLQELLPILENVAKSGRPLLIVAEDVEGQALATLVVNNLRGTFKVAAVKAPGFGDRRKAMLQDLAILTGGQVISEELGMSLETADPSSLGTASKVVIDKENTVIVDGAGTEASVNTRVDQIRAEIESSTSDYDIEKLQERVAKLAGGVAVIKVGAGSE 386
[Close]
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH605_SINMW (60 kDa chaperonin 5 OS=Sinorhizobium medicae (strain WSM419) GN=groL5 PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.690e-67
Identity = 130/224 (58.04%), Postives = 169/224 (75.45%), Query Frame = 2 
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG  GV+T+EE K+AE  L VV+GMQFDRGY+SPYFVT+ EKM  + E+  +LL +KK++N + ++ VLE  ++   P+LIIAED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L+DIAILTGGTVI +++G+ L+ V  ++LG A KV +TK+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 AEAMQKVGNEGVITVEEAKTAETELEVVDGMQFDRGYLSPYFVTNPEKMVADLEDAYILLHEKKLSNLQAMLPVLEAVVQTGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLESVTLDMLGRAKKVSITKENTTIVDGAGQKSDIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATE 386
[Close]
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH602_MESSB (60 kDa chaperonin 2 OS=Mesorhizobium sp. (strain BNC1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.690e-67
Identity = 130/224 (58.04%), Postives = 167/224 (74.55%), Query Frame = 2 
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG  GV+T+EE K+AE  L VVEGMQFDRGY+SPYF+T+ EKM VE +   LL+ +KK+ + + L+ VLE  ++   P+LIIAED+E EALATLVVNKLRG LK+AA+KAPGFG+R+   L DIAILTGGT I +++G+ L+ V  E+LG A KVV+ K+ TTIV    ++D +  RV QI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 AQAMEKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFITNQEKMRVELDEPYLLIHEKKLASLQPLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGTAISEDLGIKLENVTLEMLGRAKKVVIEKENTTIVDGAGSKDEIQGRVNQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATE 386
[Close]
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH602_AZOC5 (60 kDa chaperonin 2 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=groL2 PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.690e-67
Identity = 128/224 (57.14%), Postives = 169/224 (75.45%), Query Frame = 2 
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG  GV+T+EE K+AE  L VVEGMQFDRGY+SPYFVT++EKM VE+E+  +L+ +KK++N ++L+ VLE  ++   P++I+AED+E EALATLVVNKLRG LK+AA+KAPGFG+R+   L DIAILTGG  I +++G+ L+ V   +LG A KVV+ K+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 AEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNAEKMRVEFEDPYILIHEKKLSNLQELLPVLEAVVQSGKPLVIVAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVNLSMLGRAKKVVIEKENTTIVDGNGEKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATE 386
[Close]
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH601_RHIEC (60 kDa chaperonin 1 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL1 PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.690e-67
Identity = 130/224 (58.04%), Postives = 169/224 (75.45%), Query Frame = 2 
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG  GV+T+EE K+AE  L VVEGMQFDRGY+SPYFVT+ EKM  + E+  +LL +KK++N + ++ VLE  ++   P+LIIAED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L+DIAILTGGTVI +++G+ L+ V  ++LG A KV ++K+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 AEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMIADLEDVFILLHEKKLSNLQSMLPVLEAVVQTGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLESVTLDMLGRAKKVSISKENTTIVDGSGAKSDIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTE 386
[Close]
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_PECCP (60 kDa chaperonin OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=groL PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.513e-67
Identity = 130/224 (58.04%), Postives = 167/224 (74.55%), Query Frame = 2 
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG   ++ L VVEGMQFDRGY+SPYF+   E  AVE E+  +LL DKKI+N R+++ VLE   +   P++I+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LTGGTVI +E+GL L+K   E LG A +VV+ KDTTTI+     + A+  RVAQIR  +E A  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMDKVGKEGVITVEEGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLVIVAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGLELEKATLEDLGQAKRVVINKDTTTIIDGTGEEAAIQGRVAQIRQQVEEATSDYDREKLQERVAKLAGGVAVIKVGAATE 386
[Close]
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_NEIMF (60 kDa chaperonin OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=groL PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.513e-67
Identity = 131/224 (58.48%), Postives = 166/224 (74.11%), Query Frame = 2 
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+GKS EN L VVEGMQFDRGY+SPYF+ D+EK     +N  +LL DKKI+N RDL+ VLE   + + P+LIIAED+E EALATLVVN +RG LK  A+KAPGFG+R+   L DIAILTGGTVI +EVGL+L+K   + LG A ++ + K+ TTI+        +  RVA+IR  IE A  DY++EKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMEKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINDAEKQIAGLDNPFVLLFDKKISNIRDLLPVLEQVAKASRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLEKATLDDLGQAKRIEIGKENTTIIDGFGDAAQIEARVAEIRQQIETATSDYDKEKLQERVAKLAGGVAVIKVGAATE 386
[Close]
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_NEIMA (60 kDa chaperonin OS=Neisseria meningitidis serogroup A GN=groL PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.513e-67
Identity = 131/224 (58.48%), Postives = 166/224 (74.11%), Query Frame = 2 
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+GKS EN L VVEGMQFDRGY+SPYF+ D+EK     +N  +LL DKKI+N RDL+ VLE   + + P+LIIAED+E EALATLVVN +RG LK  A+KAPGFG+R+   L DIAILTGGTVI +EVGL+L+K   + LG A ++ + K+ TTI+        +  RVA+IR  IE A  DY++EKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMEKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINDAEKQIAGLDNPFVLLFDKKISNIRDLLPVLEQVAKASRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLEKATLDDLGQAKRIEIGKENTTIIDGFGDAAQIEARVAEIRQQIETATSDYDKEKLQERVAKLAGGVAVIKVGAATE 386
[Close]
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_ENTIT (60 kDa chaperonin (Fragment) OS=Enterobacter intermedius GN=groL PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.513e-67
Identity = 131/224 (58.48%), Postives = 167/224 (74.55%), Query Frame = 2 
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+G   E+ L VVEGMQFDRGY+SPYF+   E  AVE E+  +LL DKKI+N R+++ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LTGGTVI +E+G+ L+K   E +G A +VV+ KDTTTI+     + A+  RVAQIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMDKVGKEGVITVEDGTGLEDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDMGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRKQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATE 386
[Close]
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_DICNV (60 kDa chaperonin OS=Dichelobacter nodosus (strain VCS1703A) GN=groL PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.513e-67
Identity = 127/224 (56.70%), Postives = 166/224 (74.11%), Query Frame = 2 
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG+  E+ L VVEGMQFDRGY+SPYF+ + +   VE EN  +LL DKKI N RD++ +LE   +   P+LI+AED+E EALATLV+N +RG +K+AA+KAPGFG+R+   L+DIAILTGGTVI +EVGL L+ V  + LG A +V + KD TTI+     + A+  RVA IR  IE +  DY++EKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMEKVGKEGVITVEEGQGLEDSLEVVEGMQFDRGYLSPYFINNQQSQQVELENPYILLHDKKIANIRDMLPLLEGVAKSGQPLLIVAEDVEGEALATLVINSMRGIVKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEEVGLTLESVTLDQLGTAKRVTVGKDNTTIIDGSGEKSAIEARVALIRHQIEESSSDYDKEKLQERVAKLAGGVAVIKVGAATE 386
The following BLAST results are available for this feature:
BLAST of FC920519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_OLEAN2.690e-6757.5960 kDa chaperonin OS=Oleispira antarctica GN=groL ... [more]
CH605_SINMW2.690e-6758.0460 kDa chaperonin 5 OS=Sinorhizobium medicae (stra... [more]
CH602_MESSB2.690e-6758.0460 kDa chaperonin 2 OS=Mesorhizobium sp. (strain B... [more]
CH602_AZOC52.690e-6757.1460 kDa chaperonin 2 OS=Azorhizobium caulinodans (s... [more]
CH601_RHIEC2.690e-6758.0460 kDa chaperonin 1 OS=Rhizobium etli (strain CFN ... [more]
CH60_PECCP3.513e-6758.0460 kDa chaperonin OS=Pectobacterium carotovorum su... [more]
CH60_NEIMF3.513e-6758.4860 kDa chaperonin OS=Neisseria meningitidis serogr... [more]
CH60_NEIMA3.513e-6758.4860 kDa chaperonin OS=Neisseria meningitidis serogr... [more]
CH60_ENTIT3.513e-6758.4860 kDa chaperonin (Fragment) OS=Enterobacter inter... [more]
CH60_DICNV3.513e-6756.7060 kDa chaperonin OS=Dichelobacter nodosus (strain... [more]

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Properties
Property NameValue
Genbank descriptionC32009E02EF RVDevelop1 Citrus clementina cDNA clone C32009E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920519 ID=FC920519; Name=FC920519; organism=Citrus clementina; type=EST; length=679bp
CTCTGCCGGGGCCATGAGTAAAGTGGGACGTACGGGTGTGGTGACCCTTG
AAGAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAA
TTTGATCGTGGTTATATTTCTCCCTACTTCGTCACTGATAGTGAGAAAAT
GGCAGTTGAATATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTA
CCAATGCAAGGGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCA
TACCCAATTTTGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAAC
TCTTGTCGTGAACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAG
CTCCTGGTTTTGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATT
TTGACTGGAGGAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAA
AGTTGGCAAGGAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGG
ATACCACCACCATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAA
CGAGTGGCGCAAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGA
AAGGGAGAAGCTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTG
TCATACAGGTTGGAGCTCAAACTGAGACA
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