FC920519

Overview
NameFC920519
Unique NameFC920519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_AQUAE (60 kDa chaperonin OS=Aquifex aeolicus GN=groL PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 5.992e-67
Identity = 124/224 (55.36%), Postives = 166/224 (74.11%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM +VG+ GV+T+EE KSAE  L VV+GMQFDRGY+SPYFVTD EKM    EN  +L+ +KKITN ++L+ +LE  +R   P+L+IAED+E EALATLVVN ++G LK  A+KAPGFG+R+  YL DIA+LTGG  I +++G+ L+ V  ++LG A KVV+ K+ TTI+G     + +  R+ QI+  I+    DY+REKL ER+AKLSGGVA+I+VGA TE
Sbjct:  163 ADAMEEVGKDGVITVEESKSAETTLEVVKGMQFDRGYLSPYFVTDPEKMECVLENPYILIYEKKITNVKELLPILEQVVRSGRPLLVIAEDVEGEALATLVVNHIKGVLKACAVKAPGFGQRRKDYLGDIAVLTGGQAITEDLGIKLESVTLDMLGQAEKVVVDKEHTTIIGGKGDPEQIKARIEQIKRQIQETTSDYDREKLQERLAKLSGGVAIIRVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_AERHH (60 kDa chaperonin OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=groL PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 5.992e-67
Identity = 128/224 (57.14%), Postives = 167/224 (74.55%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVGR GV+T+E+G+  ++ L VVEGMQFDRGY+SPYFV   E  AVE ++  +LLVDKK++N R+++ VLE   +   P++I+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +EVG+ L+K   E LG A ++V+TK+ TTI+        +  RVAQIR  IE    DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMDKVGRDGVITVEDGQGLDDELAVVEGMQFDRGYLSPYFVNKPETGAVELDDPFILLVDKKVSNIREMLPVLEGVAKAGKPLIIVAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGMELEKATLEDLGRAKRIVITKENTTIIDGVGDASLIESRVAQIRQQIEETSSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH604_RHIEC (60 kDa chaperonin 4 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL4 PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 5.992e-67
Identity = 125/224 (55.80%), Postives = 172/224 (76.79%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A A+ KVG  GV+T+EE K+AE  L VVEGMQFDRGY+SPYFVT+++KM VE+E+  +L+ +KK++N + ++ +LE  ++   P+LIIAED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L+DIAILT GTVI +++G+ L+ V   +LG A K+ + K+ TTI+    +++ +S R+AQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 AEAVQKVGNDGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNADKMRVEFEDPYILIHEKKLSNLQSMLPILEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTAGTVISEDLGIKLENVTLNMLGRAKKITVEKENTTIIDGVGSKEEISGRIAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH603_RHILO (60 kDa chaperonin 3 OS=Rhizobium loti GN=groL3 PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 5.992e-67
Identity = 127/224 (56.70%), Postives = 172/224 (76.79%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG  GV+T+EE K+AE  L VVEGMQFDRGY+SPYFVT+++KM  + E+  +LL +KK++N + ++ VLE  ++ + P+LII+ED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L+DIAILTGG VI +++G+ L+ VG ++LG A KV ++K+ TTIV     ++ +  RVAQI+  IE    DY++EKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 AEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNADKMVADLEDAYILLHEKKLSNLQAMLPVLEAVVQTSKPLLIISEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTGGQVISEDLGIKLENVGLDMLGRAKKVSISKENTTIVDGAGKKEEIQGRVAQIKQQIEETTSDYDKEKLQERLAKLAGGVAVIRVGGATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH602_VIBPA (60 kDa chaperonin 2 OS=Vibrio parahaemolyticus GN=groL2 PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 5.992e-67
Identity = 126/224 (56.25%), Postives = 169/224 (75.45%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVGR GV+T+EEG+  +N L VVEGMQFDRGY+SPYF+T+ E  +VE +N  +LLVDKK+++ R+L+ VLE+  + +  +LIIAEDIE EALATLVVN +RG ++  A+KAPGFG+ +   ++DIA+LT GTVI +E+GL L+K   E LG+A KV +TKDTTTIVG  +   A++ RVA I   IE     Y+++KL +R+AKLSGGVAVI++GA TE
Sbjct:  163 AEAMEKVGRNGVITVEEGQGLDNELSVVEGMQFDRGYLSPYFITNQENGSVELDNPYILLVDKKVSSIRELLPVLEEVAKSSRSLLIIAEDIEGEALATLVVNNMRGIVRATAVKAPGFGDNRKAMMEDIAVLTAGTVISEEIGLELEKATLEQLGSAKKVTITKDTTTIVGGAAEASAIADRVASIEKQIETTTSQYDKDKLQQRVAKLSGGVAVIKIGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH602_SYNJA (60 kDa chaperonin 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL2 PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 5.992e-67
Identity = 135/225 (60.00%), Postives = 166/225 (73.78%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            A AM KVGR GV++LEEGKS    L V EGM+FD+GYISPYFVTD+E+M    EN  +L+ DKKIT  +DL+ VLE   R   P+LIIAEDIE+EALATLVVNKLRG L + A+KAPGFG+R+   L+DIAILTGG VI +E GL L+    +  G+A +V +TKD TTIV +G+ + AV  R  QIR  IE  +  Y++EKL ER+AKLSGGVAVI+VGA TET
Sbjct:  162 AEAMDKVGREGVISLEEGKSMTTELEVTEGMRFDKGYISPYFVTDTERMEAVLENPYILITDKKITLVQDLVPVLEQVARAGRPLLIIAEDIEKEALATLVVNKLRGVLSVVAVKAPGFGDRRKAMLEDIAILTGGEVISEERGLKLENARLDSFGSARRVTVTKDHTTIVAEGN-EAAVKARCEQIRRQIEETDSTYDKEKLQERLAKLSGGVAVIKVGAATET 385          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH602_GLOVI (60 kDa chaperonin 2 OS=Gloeobacter violaceus GN=groL2 PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 5.992e-67
Identity = 131/225 (58.22%), Postives = 167/225 (74.22%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            A AM KVG+ GV+T+EE KS    L VVEGMQFD+GY+SPYFVTD+E+M  + +   +LL DKKI+  +DLI VLE   R   P+LII+ED+E EALATLVVNKLRG L   A+KAPGFG+R+   L DIA+LTGG VI +++GL L+ V  ++LG A KV +TKD TTIV     + AV KR+AQI   +E+ + D++REKL ER+AKL+GGVAVI+VGA TET
Sbjct:  162 AEAMDKVGKEGVITVEESKSLVTELDVVEGMQFDKGYVSPYFVTDTERMITDLDEPFILLTDKKISIIQDLIPVLEKVARAGRPLLIISEDLEGEALATLVVNKLRGVLNCVAVKAPGFGDRRKAMLQDIAVLTGGDVISEDIGLKLENVTIDMLGKARKVTITKDKTTIVAGTDNKAAVEKRIAQIHKQMEDTDSDFDREKLQERLAKLAGGVAVIKVGAATET 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 5.992e-67
Identity = 127/225 (56.44%), Postives = 166/225 (73.78%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            A A+ KV + GV+T+EE KS    L VVEGMQ DRGYISPYF+T++E+  VE EN ++L+ DKKI++ ++L+ VLE   R   P+LIIAED+E +ALATLVVNK RG L +AA+KAPGFGER+   L DIAILT G +I +E+GL+LD    E LG A K+ + KD TTIV   +T+  + KR+AQIR  +E  + +Y+ EKL ERIAKL+GG+AVI+VGA TET
Sbjct:  161 AQAVEKVTKDGVITVEESKSLTTELDVVEGMQIDRGYISPYFITNNERQTVELENVRILITDKKISSIQELVPVLEKVARLGQPLLIIAEDVEGDALATLVVNKARGVLSVAAIKAPGFGERRKALLQDIAILTDGQLISEEIGLSLDTASLEALGTAQKITIEKDNTTIVAGNTTKPEIQKRIAQIRRQLEETDSEYDSEKLQERIAKLAGGIAVIKVGAATET 385          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH601_NITWN (60 kDa chaperonin 1 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=groL1 PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 5.992e-67
Identity = 127/224 (56.70%), Postives = 167/224 (74.55%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG  GV+T+EE KS E  L VVEGMQFDRGY+SPYFVTD+EKM VE+E+  +L+ +KK++  + ++ +LE  ++   P+L+IAED+E EALATLVVNKLRG LK+AA+KAPGFG+R+   L+DIAILTGGT I +++G+ L+ V   +LG A KVV+ K+ TTIV     +  +  RV QI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 AEAMQKVGNEGVITVEEAKSLETELEVVEGMQFDRGYVSPYFVTDAEKMRVEFEDPYVLIHEKKLSGLQAMVPLLESVVQSGKPLLVIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTAISEDLGIKLENVTLNMLGRAKKVVIDKENTTIVDGAGRKKDIEARVTQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_PECCC (60 kDa chaperonin (Fragment) OS=Pectobacterium carotovorum subsp. carotovorum GN=groL PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 7.826e-67
Identity = 129/224 (57.59%), Postives = 167/224 (74.55%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG   ++ L VVEGMQFDRGY+SPYF+   E  AVE E+  +LL DKKI+N R+++ VLE   +   P++I+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LTGGTVI +E+GL L+K   E LG A +VV+ KDTTTI+     + A+  RVAQIR  +E A  DY++EKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMDKVGKEGVITVEEGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLVIVAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGLELEKATLEDLGQAKRVVINKDTTTIIDGTGEEAAIQGRVAQIRQQVEEATSDYDKEKLQERVAKLAGGVAVIKVGAATE 386          
The following BLAST results are available for this feature:
BLAST of FC920519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_AQUAE5.992e-6755.3660 kDa chaperonin OS=Aquifex aeolicus GN=groL PE=3... [more]
CH60_AERHH5.992e-6757.1460 kDa chaperonin OS=Aeromonas hydrophila subsp. h... [more]
CH604_RHIEC5.992e-6755.8060 kDa chaperonin 4 OS=Rhizobium etli (strain CFN ... [more]
CH603_RHILO5.992e-6756.7060 kDa chaperonin 3 OS=Rhizobium loti GN=groL3 PE=... [more]
CH602_VIBPA5.992e-6756.2560 kDa chaperonin 2 OS=Vibrio parahaemolyticus GN=... [more]
CH602_SYNJA5.992e-6760.0060 kDa chaperonin 2 OS=Synechococcus sp. (strain J... [more]
CH602_GLOVI5.992e-6758.2260 kDa chaperonin 2 OS=Gloeobacter violaceus GN=gr... [more]
CH602_ANAVT5.992e-6756.4460 kDa chaperonin 2 OS=Anabaena variabilis (strain... [more]
CH601_NITWN5.992e-6756.7060 kDa chaperonin 1 OS=Nitrobacter winogradskyi (s... [more]
CH60_PECCC7.826e-6757.5960 kDa chaperonin (Fragment) OS=Pectobacterium car... [more]

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Properties
Property NameValue
Genbank descriptionC32009E02EF RVDevelop1 Citrus clementina cDNA clone C32009E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920519 ID=FC920519; Name=FC920519; organism=Citrus clementina; type=EST; length=679bp
CTCTGCCGGGGCCATGAGTAAAGTGGGACGTACGGGTGTGGTGACCCTTG
AAGAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAA
TTTGATCGTGGTTATATTTCTCCCTACTTCGTCACTGATAGTGAGAAAAT
GGCAGTTGAATATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTA
CCAATGCAAGGGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCA
TACCCAATTTTGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAAC
TCTTGTCGTGAACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAG
CTCCTGGTTTTGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATT
TTGACTGGAGGAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAA
AGTTGGCAAGGAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGG
ATACCACCACCATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAA
CGAGTGGCGCAAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGA
AAGGGAGAAGCTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTG
TCATACAGGTTGGAGCTCAAACTGAGACA
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