FC920519

Overview
NameFC920519
Unique NameFC920519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:789..1467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH601_CHRVO (60 kDa chaperonin 1 OS=Chromobacterium violaceum GN=groL1 PE=3 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.863e-68
Identity = 131/224 (58.48%), Postives = 166/224 (74.11%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+GKS +N L VVEGMQFDRGY+SPYF+TD EK     E+  +LL DKKI+N RDL+ VLE   +   P+LI+AED+E EALATLVVN +RG LK+AA+KAPGFG+R+   L+DIAILTGGTVI +E GL L+K G   LG+A +V + K+ TTI+     +  +  RV  IR  I+ A  DY+REKL ER+AKLSGGVAVI++GA TE
Sbjct:  163 ADAMDKVGKEGVITVEDGKSLDNELAVVEGMQFDRGYLSPYFITDPEKQTAVLEDPLVLLYDKKISNIRDLLPVLEQVAKAGKPLLIVAEDVEGEALATLVVNSMRGILKVAAVKAPGFGDRRKAMLEDIAILTGGTVIAEETGLTLEKAGLAELGSAKRVEIGKENTTIIDGAGDKAKIDARVQAIRAQIDAATSDYDREKLQERVAKLSGGVAVIRIGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_SHEWM (60 kDa chaperonin OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=groL PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.433e-68
Identity = 130/224 (58.04%), Postives = 170/224 (75.89%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG++ EN L VVEGMQFDRGY+SPYF+   E  +VE E+  +LLVDKK++N R+L+ +LE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +E+GL L+K   E LG A +V++TKD TTI+     QD +  RVAQI+   E +  DY++EKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 ATAMEKVGKEGVITVEEGQALENELDVVEGMQFDRGYLSPYFINKPETGSVELESPFILLVDKKVSNIRELLPILEGLAKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVIAEEIGLELEKATLEDLGTAKRVIITKDDTTIIDGTGEQDQIQARVAQIKVQAEESTSDYDKEKLQERMAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_PSEAE (60 kDa chaperonin OS=Pseudomonas aeruginosa GN=groL PE=1 SV=3)

HSP 1 Score: 258.455 bits (659), Expect = 2.433e-68
Identity = 133/224 (59.38%), Postives = 166/224 (74.11%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG   EN L VVEGMQFDRGY+SPYFV   + MA E ++  LLLVDKKI+N R+++ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +EVGL+L+    E LGNA +VV+ K+ TTI+     Q  +  RV QIR  IE    DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMEKVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFVNKPDTMAAELDSPLLLLVDKKISNIREMLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLEGATLEHLGNAKRVVINKENTTIIDGAGVQADIEARVLQIRKQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_PSEAB (60 kDa chaperonin OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=groL PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.433e-68
Identity = 133/224 (59.38%), Postives = 166/224 (74.11%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG   EN L VVEGMQFDRGY+SPYFV   + MA E ++  LLLVDKKI+N R+++ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +EVGL+L+    E LGNA +VV+ K+ TTI+     Q  +  RV QIR  IE    DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMEKVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFVNKPDTMAAELDSPLLLLVDKKISNIREMLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLEGATLEHLGNAKRVVINKENTTIIDGAGVQADIEARVLQIRKQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_PSEA8 (60 kDa chaperonin OS=Pseudomonas aeruginosa (strain LESB58) GN=groL PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.433e-68
Identity = 133/224 (59.38%), Postives = 166/224 (74.11%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG   EN L VVEGMQFDRGY+SPYFV   + MA E ++  LLLVDKKI+N R+++ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +EVGL+L+    E LGNA +VV+ K+ TTI+     Q  +  RV QIR  IE    DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMEKVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFVNKPDTMAAELDSPLLLLVDKKISNIREMLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLEGATLEHLGNAKRVVINKENTTIIDGAGVQADIEARVLQIRKQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_PSEA7 (60 kDa chaperonin OS=Pseudomonas aeruginosa (strain PA7) GN=groL PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.433e-68
Identity = 133/224 (59.38%), Postives = 166/224 (74.11%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG   EN L VVEGMQFDRGY+SPYFV   + MA E ++  LLLVDKKI+N R+++ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +EVGL+L+    E LGNA +VV+ K+ TTI+     Q  +  RV QIR  IE    DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMEKVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFVNKPDTMAAELDSPLLLLVDKKISNIREMLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLEGATLEHLGNAKRVVINKENTTIIDGAGVQADIEARVLQIRKQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_CAMHC (60 kDa chaperonin OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=groL PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.433e-68
Identity = 135/225 (60.00%), Postives = 166/225 (73.78%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            A AM KVG+ GV+T+EE KS  + L VVEGMQFDRGY+SPYF+TD+EKM VE  +  +LL DKKITN +DL+ VLE   +   P+LIIAEDIE EALATLVVNKLRG L I+A+KAPGFG+R+   L+DIAILTGGTVI +E+G  L+      LG A ++++ KD TTIV     +D +  RV QI+  I     DY+REKL ER+AKLSGGVAVI+VGA TET
Sbjct:  162 ADAMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGYLSPYFITDAEKMQVELNSPLVLLFDKKITNLKDLLPVLEQVQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVKAPGFGDRRKAMLEDIAILTGGTVISEELGRTLESASIADLGKAERILIDKDNTTIVNGAGKKDDIKARVDQIKAQIAVTSSDYDREKLQERLAKLSGGVAVIKVGAATET 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH602_VIBC3 (60 kDa chaperonin 2 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=groL2 PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.433e-68
Identity = 131/224 (58.48%), Postives = 171/224 (76.34%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVGR GV+T+EEG++ ++ L VVEGMQFDRGY+SPYF+ + E  +VE +N  +LLVDKKI+N R+L+ VLE   + + P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGG VI +E+GL L+K   E LG A +V +TK+ +TI+     Q A+  RVAQIR  IE A  DY++EKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMEKVGRDGVITVEEGQALQDELDVVEGMQFDRGYLSPYFINNQESGSVELDNPFILLVDKKISNIRELLPVLEGVAKASRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGVVISEEIGLELEKATLEDLGQAKRVSITKENSTIIDGAGDQAAIQGRVAQIRQQIEEATSDYDKEKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH601_VIBCH (60 kDa chaperonin 1 OS=Vibrio cholerae GN=groL1 PE=3 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.433e-68
Identity = 131/224 (58.48%), Postives = 171/224 (76.34%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVGR GV+T+EEG++ ++ L VVEGMQFDRGY+SPYF+ + E  +VE +N  +LLVDKKI+N R+L+ VLE   + + P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGG VI +E+GL L+K   E LG A +V +TK+ +TI+     Q A+  RVAQIR  IE A  DY++EKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMEKVGRDGVITVEEGQALQDELDVVEGMQFDRGYLSPYFINNQESGSVELDNPFILLVDKKISNIRELLPVLEGVAKASRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGVVISEEIGLELEKATLEDLGQAKRVSITKENSTIIDGAGDQAAIQGRVAQIRQQIEEATSDYDKEKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_SHESH (60 kDa chaperonin OS=Shewanella sediminis (strain HAW-EB3) GN=groL PE=3 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.177e-68
Identity = 130/224 (58.04%), Postives = 170/224 (75.89%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG++ EN L VVEGMQFDRGY+SPYF+   E  +VE E+  +LLVDKK++N R+L+ +LE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +E+GL L+K   E LG A +V++TKD TTI+     QD +  RVAQI+   E +  DY++EKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 ATAMEKVGKEGVITVEEGQALENELDVVEGMQFDRGYLSPYFINKPETGSVELESPFILLVDKKVSNIRELLPILEGLAKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVIAEEIGLELEKATLEDLGTAKRVIITKDDTTIIDGTGEQDQIKARVAQIKIQAEESTSDYDKEKLQERMAKLAGGVAVIKVGAATE 386          
The following BLAST results are available for this feature:
BLAST of FC920519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_CHRVO1.863e-6858.4860 kDa chaperonin 1 OS=Chromobacterium violaceum G... [more]
CH60_SHEWM2.433e-6858.0460 kDa chaperonin OS=Shewanella woodyi (strain ATC... [more]
CH60_PSEAE2.433e-6859.3860 kDa chaperonin OS=Pseudomonas aeruginosa GN=gro... [more]
CH60_PSEAB2.433e-6859.3860 kDa chaperonin OS=Pseudomonas aeruginosa (strai... [more]
CH60_PSEA82.433e-6859.3860 kDa chaperonin OS=Pseudomonas aeruginosa (strai... [more]
CH60_PSEA72.433e-6859.3860 kDa chaperonin OS=Pseudomonas aeruginosa (strai... [more]
CH60_CAMHC2.433e-6860.0060 kDa chaperonin OS=Campylobacter hominis (strain... [more]
CH602_VIBC32.433e-6858.4860 kDa chaperonin 2 OS=Vibrio cholerae serotype O1... [more]
CH601_VIBCH2.433e-6858.4860 kDa chaperonin 1 OS=Vibrio cholerae GN=groL1 PE... [more]
CH60_SHESH3.177e-6858.0460 kDa chaperonin OS=Shewanella sediminis (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC32009E02EF RVDevelop1 Citrus clementina cDNA clone C32009E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920519 ID=FC920519; Name=FC920519; organism=Citrus clementina; type=EST; length=679bp
CTCTGCCGGGGCCATGAGTAAAGTGGGACGTACGGGTGTGGTGACCCTTG
AAGAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAA
TTTGATCGTGGTTATATTTCTCCCTACTTCGTCACTGATAGTGAGAAAAT
GGCAGTTGAATATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTA
CCAATGCAAGGGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCA
TACCCAATTTTGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAAC
TCTTGTCGTGAACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAG
CTCCTGGTTTTGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATT
TTGACTGGAGGAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAA
AGTTGGCAAGGAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGG
ATACCACCACCATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAA
CGAGTGGCGCAAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGA
AAGGGAGAAGCTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTG
TCATACAGGTTGGAGCTCAAACTGAGACA
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