FC920519

Overview
NameFC920519
Unique NameFC920519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:789..1467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_NITSB (60 kDa chaperonin OS=Nitratiruptor sp. (strain SB155-2) GN=groL PE=3 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.177e-68
Identity = 135/226 (59.73%), Postives = 169/226 (74.78%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIR-GAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            A AM KVG+ GV+T+EEGKS ++ L VVEGMQFDRGY+SPYFVTD+EKM    EN  +LL DKKI+N +DL+ VLE  ++ G  P+LIIAEDIE EALATLVVNKLRG L + A+KAPGFG+R+   L DIAILTGG VI +EVG  L+    E LG A ++V+ K+ TTIVG    + AV  R+ +I+  IE    +Y++EKL ER+AKL+GGVAVI+VGA TET
Sbjct:  163 AEAMEKVGKDGVITVEEGKSLQDELEVVEGMQFDRGYLSPYFVTDTEKMEAVLENAYILLYDKKISNMKDLLPVLEKVVQTGNKPLLIIAEDIEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLQDIAILTGGQVISEEVGRTLESATLEDLGQADRIVVDKENTTIVGGKGDKAAVEARIKEIKAQIEQTTSEYDKEKLQERLAKLAGGVAVIKVGAATET 388          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_HELPJ (60 kDa chaperonin OS=Helicobacter pylori J99 GN=groL PE=3 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.177e-68
Identity = 132/224 (58.93%), Postives = 169/224 (75.45%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EE K  E+ L VVEGMQFDRGY+SPYFVT++EKM  + +N  +LL DKKI++ +D++ +LE  ++   P+LIIAEDIE EAL TLVVNKLRG L IAA+KAPGFG+R+ + L DIAILTGG VI +E+GL+L+    E LG A ++V+ KD TTIV      D V  RVAQI+T I +   DY++EKL ER+AKLSGGVAVI+VGA +E
Sbjct:  162 ADAMEKVGKDGVITVEEAKGIEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMKEGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAILTGGQVISEELGLSLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSDDVKDRVAQIKTQIASTTSDYDKEKLQERLAKLSGGVAVIKVGAASE 385          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_HELPH (60 kDa chaperonin OS=Helicobacter pylori (strain HPAG1) GN=groL PE=3 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.177e-68
Identity = 132/224 (58.93%), Postives = 169/224 (75.45%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EE K  E+ L VVEGMQFDRGY+SPYFVT++EKM  + +N  +LL DKKI++ +D++ +LE  ++   P+LIIAEDIE EAL TLVVNKLRG L IAA+KAPGFG+R+ + L DIAILTGG VI +E+GL+L+    E LG A ++V+ KD TTIV      D V  RVAQI+T I +   DY++EKL ER+AKLSGGVAVI+VGA +E
Sbjct:  162 ADAMEKVGKDGVITVEEAKGIEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMKEGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAILTGGQVISEELGLSLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSDDVKDRVAQIKTQIASTTSDYDKEKLQERLAKLSGGVAVIKVGAASE 385          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH602_SYNP6 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.177e-68
Identity = 133/225 (59.11%), Postives = 164/225 (72.89%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            A A++KV + GV+T+EE KS    L VVEGMQFDRGY+SPYFVTD ++  VEY+N  +LL DKKI + +DL+ VLED  R   P+LIIAEDIE EALATLVVNK RG L   A+KAP FG+R+   L DIA+LTGG VI +EVGL+L      VLG A K+ ++KDTT IV     +  V+ R+AQIR  +E  + DY+REKL ERIAKL+GGVAVI+VGA TET
Sbjct:  162 ADAVAKVTKDGVITVEESKSLATELEVVEGMQFDRGYLSPYFVTDQDRQVVEYDNPLILLTDKKIASIQDLVPVLEDVARAGRPLLIIAEDIEGEALATLVVNKARGVLNTVAVKAPAFGDRRKAILQDIAVLTGGQVISEEVGLSLADANSSVLGKAQKITISKDTTIIVAGDENKADVAARIAQIRRSLEETDSDYDREKLQERIAKLAGGVAVIKVGAPTET 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_VIBHB (60 kDa chaperonin OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=groL PE=3 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 4.149e-68
Identity = 131/224 (58.48%), Postives = 171/224 (76.34%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVGR GV+T+EEG++ ++ L VVEGMQFDRGY+SPYF+ + E  +VE EN  +LL+DKK++N R+L+  LE   + + P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGG VI +EVGL L+KV  E LG A +V +TK+ TTI+     +  +  RVAQIR  IE+A  DY++EKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMEKVGRDGVITVEEGQALQDELDVVEGMQFDRGYLSPYFINNQEAGSVELENPFILLIDKKVSNIRELLPALEAVAKASRPLLIIAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGIVISEEVGLELEKVALEDLGQAKRVAITKENTTIIDGMGEEAMIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_PSEHT (60 kDa chaperonin OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=groL PE=3 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 4.149e-68
Identity = 132/225 (58.67%), Postives = 172/225 (76.44%), Query Frame = 2
Query:    5 AGAMSKVGR-TGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVGR +GV+T+EEG+S EN L VVEGMQFDRGY+SPYF+   EK  VE +N  +LLVDKKI+N R+L+  LE   + + P+LIIAED+E EALATLVVN +RG +K++A+KAPGFG+R+   L DIA+LTGGTVI +E+GL L+K   E LG A +V++TKD TTI+     +  ++ RV+QI+  IE A  DY++EKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AQAMEKVGRNSGVITVEEGQSLENELDVVEGMQFDRGYLSPYFINSPEKGTVELDNPFILLVDKKISNIRELLPTLEAVAKASKPLLIIAEDLEGEALATLVVNNMRGIVKVSAVKAPGFGDRRKAMLQDIAVLTGGTVISEEIGLELEKATVEDLGTAKRVIITKDDTTIIDGAGEEAGINGRVSQIKAQIEEATSDYDKEKLQERMAKLAGGVAVIKVGAATE 387          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_HELPG (60 kDa chaperonin OS=Helicobacter pylori (strain G27) GN=groL PE=3 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 4.149e-68
Identity = 131/224 (58.48%), Postives = 169/224 (75.45%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EE K  E+ L VVEGMQFDRGY+SPYFVT++EKM  + +N  +LL DKKI++ +D++ +LE  ++   P+LIIAEDIE EAL TLVVNKLRG L IAA+KAPGFG+R+ + L DIA+LTGG VI +E+GL+L+    E LG A ++V+ KD TTIV      D V  RVAQI+T I +   DY++EKL ER+AKLSGGVAVI+VGA +E
Sbjct:  162 ADAMEKVGKDGVITVEEAKGIEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMKEGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAVLTGGQVISEELGLSLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSDDVKDRVAQIKTQIASTTSDYDKEKLQERLAKLSGGVAVIKVGAASE 385          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH602_VIBVY (60 kDa chaperonin 2 OS=Vibrio vulnificus (strain YJ016) GN=groL2 PE=3 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 4.149e-68
Identity = 131/224 (58.48%), Postives = 169/224 (75.45%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVGR GV+T+EEG+   N L VVEGMQFDRGY+SPYF+T+ +  AVE +N  +LLVDKK+++ R+L+ VLE   + +  +LIIAEDI+ EALATLVVN LRG ++ AA+KAPGFG+ +   L+DIA+LT GTVI +E+GL L+K   E LG+A KV +TKDTTTIVG  + + A+  RVA I   IEN    Y++EKL +RIAKLSGGVAVI++GA TE
Sbjct:  163 AEAMEKVGRNGVITVEEGQGLSNELSVVEGMQFDRGYLSPYFITNQDSGAVELDNPYILLVDKKVSSIRELLPVLESVAKASRSLLIIAEDIDGEALATLVVNNLRGIVRAAAVKAPGFGDNRKAMLEDIAVLTAGTVISEEIGLELEKATIEQLGSAKKVTITKDTTTIVGGAAQESAIRDRVATIEKQIENTTSSYDKEKLQQRIAKLSGGVAVIKIGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH602_VIBVU (60 kDa chaperonin 2 OS=Vibrio vulnificus GN=groL2 PE=3 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 4.149e-68
Identity = 131/224 (58.48%), Postives = 169/224 (75.45%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVGR GV+T+EEG+   N L VVEGMQFDRGY+SPYF+T+ +  AVE +N  +LLVDKK+++ R+L+ VLE   + +  +LIIAEDI+ EALATLVVN LRG ++ AA+KAPGFG+ +   L+DIA+LT GTVI +E+GL L+K   E LG+A KV +TKDTTTIVG  + + A+  RVA I   IEN    Y++EKL +RIAKLSGGVAVI++GA TE
Sbjct:  163 AEAMEKVGRNGVITVEEGQGLSNELSVVEGMQFDRGYLSPYFITNQDSGAVELDNPYILLVDKKVSSIRELLPVLESVAKASRSLLIIAEDIDGEALATLVVNNLRGIVRAAAVKAPGFGDNRKAMLEDIAVLTAGTVISEEIGLELEKATIEQLGSAKKVTITKDTTTIVGGAAQESAIRDRVATIEKQIENTTSSYDKEKLQQRIAKLSGGVAVIKIGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH602_RHILO (60 kDa chaperonin 2 OS=Rhizobium loti GN=groL2 PE=3 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 4.149e-68
Identity = 129/224 (57.59%), Postives = 172/224 (76.79%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG  GV+T+EE K+AE  L VVEGMQFDRGY+SPYF+T+ +KM VE E   +L+ +KK++N + L+ VLE  ++ + P+LIIAED+E EALATLVVNKLRG LK+AA+KAPGFG+R+   L+DIAILTGGT I +++G+ L+ V  E+LG A KVV+ K+ TTIV    ++D +  RV+QI++ IE    DY++EKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 AEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFITNQDKMRVELEEPYVLIHEKKLSNLQALLPVLEAVVQSSKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTAISEDLGIKLENVTLEMLGRAKKVVIEKENTTIVDGAGSKDEIQGRVSQIKSQIEETTSDYDKEKLQERLAKLAGGVAVIRVGGSTE 386          
The following BLAST results are available for this feature:
BLAST of FC920519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_NITSB3.177e-6859.7360 kDa chaperonin OS=Nitratiruptor sp. (strain SB1... [more]
CH60_HELPJ3.177e-6858.9360 kDa chaperonin OS=Helicobacter pylori J99 GN=gr... [more]
CH60_HELPH3.177e-6858.9360 kDa chaperonin OS=Helicobacter pylori (strain H... [more]
CH602_SYNP63.177e-6859.1160 kDa chaperonin 2 OS=Synechococcus sp. (strain A... [more]
CH60_VIBHB4.149e-6858.4860 kDa chaperonin OS=Vibrio harveyi (strain ATCC B... [more]
CH60_PSEHT4.149e-6858.6760 kDa chaperonin OS=Pseudoalteromonas haloplankti... [more]
CH60_HELPG4.149e-6858.4860 kDa chaperonin OS=Helicobacter pylori (strain G... [more]
CH602_VIBVY4.149e-6858.4860 kDa chaperonin 2 OS=Vibrio vulnificus (strain Y... [more]
CH602_VIBVU4.149e-6858.4860 kDa chaperonin 2 OS=Vibrio vulnificus GN=groL2 ... [more]
CH602_RHILO4.149e-6857.5960 kDa chaperonin 2 OS=Rhizobium loti GN=groL2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC32009E02EF RVDevelop1 Citrus clementina cDNA clone C32009E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920519 ID=FC920519; Name=FC920519; organism=Citrus clementina; type=EST; length=679bp
CTCTGCCGGGGCCATGAGTAAAGTGGGACGTACGGGTGTGGTGACCCTTG
AAGAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAA
TTTGATCGTGGTTATATTTCTCCCTACTTCGTCACTGATAGTGAGAAAAT
GGCAGTTGAATATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTA
CCAATGCAAGGGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCA
TACCCAATTTTGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAAC
TCTTGTCGTGAACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAG
CTCCTGGTTTTGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATT
TTGACTGGAGGAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAA
AGTTGGCAAGGAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGG
ATACCACCACCATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAA
CGAGTGGCGCAAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGA
AAGGGAGAAGCTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTG
TCATACAGGTTGGAGCTCAAACTGAGACA
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