FC920519

Overview
NameFC920519
Unique NameFC920519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH602_SYNAS (60 kDa chaperonin 2 OS=Syntrophus aciditrophicus (strain SB) GN=groL2 PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.288e-65
Identity = 127/225 (56.44%), Postives = 163/225 (72.44%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            A AM KVG+ GV+T+EE K  E  L +VEGMQFDRGY+SPYFVT+ EKM V  E+  +L+ +KKI+  +DL+ +LE   +   P+LIIAEDIE EALATLVVNK+RG L +AA+KAPGFG+R+   L+DIAILTGGTVI +++G  L+    E LG A ++ + KD TTI+     + A+  RV QIR  I+    DY+REKL ER+AKL GGVAVI+VGA TET
Sbjct:  163 AEAMGKVGKEGVITVEEAKGLETELEIVEGMQFDRGYLSPYFVTNPEKMEVSLEDALILIYEKKISGMKDLLPILEQIAKMGRPLLIIAEDIEGEALATLVVNKIRGTLHVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDMGYKLENTRLEDLGRAKRIQIDKDNTTIIDGAGERAALEGRVKQIRAQIDETTSDYDREKLQERLAKLVGGVAVIKVGAATET 387          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_SERRU (60 kDa chaperonin (Fragment) OS=Serratia rubidaea GN=groL PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.294e-65
Identity = 127/224 (56.70%), Postives = 164/224 (73.21%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG   ++ L VVEGMQFDRGY+SPYF+   E  +VE E+  +LL DKK++N R+L+ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LT GTVI +E+G+ L+K   E LG A +VV+ KDTT I+     +  +  RVAQIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMEKVGKEGVITVEEGTGLQDELDVVEGMQFDRGYLSPYFINKPETGSVELESPFILLADKKVSNIRELLPVLEAVAKAGKPLLIVAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTAGTVISEEIGMELEKATLEDLGQAKRVVINKDTTIIIDGIGDEATIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_SERFI (60 kDa chaperonin (Fragment) OS=Serratia ficaria GN=groL PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.294e-65
Identity = 128/224 (57.14%), Postives = 163/224 (72.77%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG   ++ L VVEGMQFDRGY+SPYF+   E  +VE E+  +LL DKKI+N R+L+ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LT GTVI +E+GL L+K   E LG A +VV+ KDTT I+     +  +  RV QIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMEKVGKEGVITVEEGTGLQDELDVVEGMQFDRGYLSPYFINKPETGSVELESPFILLADKKISNIRELLPVLEAVAKAGKPLLIVAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTAGTVISEEIGLELEKATLEDLGQAKRVVINKDTTIIIDGVGDEATIQGRVTQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_PSEFS (60 kDa chaperonin OS=Pseudomonas fluorescens (strain SBW25) GN=groL PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.294e-65
Identity = 123/224 (54.91%), Postives = 163/224 (72.77%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG   EN L VVEGMQFDRGY+SPYFV   E M  E ++  +LLVDKKI+N R+++ VLE   +   P+LI++ED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA+LTGGTVI +E+GL+L+    E LG+A +V ++K+ T IV     +  +  R+ QIR  +     DY+REKL ER+AKLSGGVAVI+VGA +E
Sbjct:  163 AEAMEKVGKEGVITVEEGTGLENELSVVEGMQFDRGYLSPYFVNKPETMVAELDSPLILLVDKKISNIREMLPVLEAVAKAGRPLLIVSEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAVLTGGTVISEEIGLSLESATLENLGSAKRVTISKENTIIVDGAGVEQDIQARITQIRAQVAETSSDYDREKLQERLAKLSGGVAVIKVGAGSE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_HYDS0 (60 kDa chaperonin OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=groL PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.294e-65
Identity = 121/225 (53.78%), Postives = 168/225 (74.67%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            A AM KVG+ GV+T+EE KS+E  L  V+GMQFDRGY+SPYF+TD++KM    EN  +L+ +KKI+N ++L+ VLE+ +R    ++IIAED+E EALATLVVN L+G ++  A+KAPGFG+R+  YL+DIAILTGG  I +++G+ L+ V  ++LG A KV++ K+ TTIVG    +  V  R+ QI+  I+    DY+REKL ER+AKLSGGVA+I+VGA TE+
Sbjct:  163 AEAMEKVGKDGVITVEESKSSETTLETVQGMQFDRGYLSPYFITDADKMQAVLENPYILIFEKKISNIKELLPVLENVVRVGRSLVIIAEDVEAEALATLVVNTLKGVIRAVAVKAPGFGQRRKDYLEDIAILTGGQAITEDLGIKLESVTLDMLGQAEKVIVDKENTTIVGGKGDKKKVEARIEQIKKQIKETTSDYDREKLQERLAKLSGGVAIIRVGAATES 387          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_DESVV (60 kDa chaperonin OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=groL PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.294e-65
Identity = 127/225 (56.44%), Postives = 161/225 (71.56%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            A AMSKVG+ GV+T+EE K  E  L VVEGMQFDRGY+SPYFVTD EKM  E +   +L  +KKI+  +D++ VLE   +   P++IIAED++ EALATLVVNKLRGAL++ A+KAPGFGER+   L DIA+LTGG V+ +++G+ L+ +    LG A +VV+ K+ TTIV      D +  RV QIR  IE    DY+REKL ER+AKL GGVAVI VGA TET
Sbjct:  163 AEAMSKVGKEGVITVEEAKGLETTLEVVEGMQFDRGYLSPYFVTDPEKMVCELDEPFILCNEKKISTMKDMLPVLEQVAKMQRPLVIIAEDVDGEALATLVVNKLRGALQVVAIKAPGFGERRKAMLQDIAVLTGGQVVSEDMGIKLENISVADLGTAKRVVIDKENTTIVDGAGKGDDIKARVKQIRAQIEETTSDYDREKLQERLAKLVGGVAVIHVGAATET 387          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_DESVH (60 kDa chaperonin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=groL PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.294e-65
Identity = 127/225 (56.44%), Postives = 161/225 (71.56%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            A AMSKVG+ GV+T+EE K  E  L VVEGMQFDRGY+SPYFVTD EKM  E +   +L  +KKI+  +D++ VLE   +   P++IIAED++ EALATLVVNKLRGAL++ A+KAPGFGER+   L DIA+LTGG V+ +++G+ L+ +    LG A +VV+ K+ TTIV      D +  RV QIR  IE    DY+REKL ER+AKL GGVAVI VGA TET
Sbjct:  163 AEAMSKVGKEGVITVEEAKGLETTLEVVEGMQFDRGYLSPYFVTDPEKMVCELDEPFILCNEKKISTMKDMLPVLEQVAKMQRPLVIIAEDVDGEALATLVVNKLRGALQVVAIKAPGFGERRKAMLQDIAVLTGGQVVSEDMGIKLENISVADLGTAKRVVIDKENTTIVDGAGKGDDIKARVKQIRAQIEETTSDYDREKLQERLAKLVGGVAVIHVGAATET 387          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_CHLP8 (60 kDa chaperonin OS=Chlorobaculum parvum (strain NCIB 8327) GN=groL PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.294e-65
Identity = 126/224 (56.25%), Postives = 163/224 (72.77%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EE K  +  L VVEGMQFDRGY+SPYFVT+ E M  E E   +L+ DKKI+N ++L+ +LE + +   P+LIIAEDIE EALAT+VVNKLRG LK+AA+KAPGFG+R+   L+DIAILTGGTVI +E G  L+      LG AS+V + KD TTIV     Q+ ++ R+ +I+  IE +  DY+ EKL ER+AKLSGGVAV+ +GA TE
Sbjct:  163 AEAMDKVGKDGVITVEEAKGMDTELKVVEGMQFDRGYLSPYFVTNPETMEAELEEALILIYDKKISNMKELLPILEKSAQSGRPLLIIAEDIEGEALATIVVNKLRGTLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEEKGYKLENATMAYLGQASRVNIDKDNTTIVEGKGKQEEITARINEIKGQIEKSTSDYDTEKLQERLAKLSGGVAVLNIGASTE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_BARQU (60 kDa chaperonin OS=Bartonella quintana GN=groL PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.294e-65
Identity = 125/224 (55.80%), Postives = 168/224 (75.00%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG  GV+T+EE K+AE  L VVEGMQFDRGY+SPYFVT+++KM  + ++  +L+ +KK++N + L+ VLE  ++   P+LIIAED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L+DIAILT G VI ++VG+ L+ V  ++LG A KV ++K+ TTI+     +  ++ RV QI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 ADAMEKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNADKMVADLDDPYILIHEKKLSNLQSLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTSGQVISEDVGIKLENVTLDMLGRAKKVNISKENTTIIDGAGKKAEINARVNQIKVQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_ACIF5 (60 kDa chaperonin OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=groL PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.294e-65
Identity = 122/224 (54.46%), Postives = 164/224 (73.21%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG  GV+T+EEG    N L VVEGMQFDRGY+SPYFV + +KM  E EN  +LL DKKI++ RD++ +LE   + + P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L+D+AILTGG V+ +E+G+ L+      LG A K+V+ K+ TT++     Q  +  RV QIR  +E+A  DY+REKL ER+AKL+GGVAVI+VGA +E
Sbjct:  163 AEAMEKVGNEGVITVEEGSGLANELDVVEGMQFDRGYLSPYFVNNQDKMVAELENPYILLHDKKISSIRDMLPILEQVAKSSRPLLIVAEDVEGEALATLVVNTMRGIIKVAAVKAPGFGDRRKAMLEDMAILTGGRVVSEEIGMKLESTTLADLGQAKKIVIDKENTTMIDGAGQQSEIKARVEQIRRQMEDASSDYDREKLQERVAKLAGGVAVIKVGAGSE 386          
The following BLAST results are available for this feature:
BLAST of FC920519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_SYNAS3.288e-6556.4460 kDa chaperonin 2 OS=Syntrophus aciditrophicus (... [more]
CH60_SERRU4.294e-6556.7060 kDa chaperonin (Fragment) OS=Serratia rubidaea ... [more]
CH60_SERFI4.294e-6557.1460 kDa chaperonin (Fragment) OS=Serratia ficaria G... [more]
CH60_PSEFS4.294e-6554.9160 kDa chaperonin OS=Pseudomonas fluorescens (stra... [more]
CH60_HYDS04.294e-6553.7860 kDa chaperonin OS=Hydrogenobaculum sp. (strain ... [more]
CH60_DESVV4.294e-6556.4460 kDa chaperonin OS=Desulfovibrio vulgaris subsp.... [more]
CH60_DESVH4.294e-6556.4460 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH60_CHLP84.294e-6556.2560 kDa chaperonin OS=Chlorobaculum parvum (strain ... [more]
CH60_BARQU4.294e-6555.8060 kDa chaperonin OS=Bartonella quintana GN=groL P... [more]
CH60_ACIF54.294e-6554.4660 kDa chaperonin OS=Acidithiobacillus ferrooxidan... [more]

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Properties
Property NameValue
Genbank descriptionC32009E02EF RVDevelop1 Citrus clementina cDNA clone C32009E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920519 ID=FC920519; Name=FC920519; organism=Citrus clementina; type=EST; length=679bp
CTCTGCCGGGGCCATGAGTAAAGTGGGACGTACGGGTGTGGTGACCCTTG
AAGAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAA
TTTGATCGTGGTTATATTTCTCCCTACTTCGTCACTGATAGTGAGAAAAT
GGCAGTTGAATATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTA
CCAATGCAAGGGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCA
TACCCAATTTTGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAAC
TCTTGTCGTGAACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAG
CTCCTGGTTTTGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATT
TTGACTGGAGGAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAA
AGTTGGCAAGGAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGG
ATACCACCACCATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAA
CGAGTGGCGCAAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGA
AAGGGAGAAGCTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTG
TCATACAGGTTGGAGCTCAAACTGAGACA
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