FC920519

Overview
NameFC920519
Unique NameFC920519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_ACIF2 (60 kDa chaperonin OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=groL PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.294e-65
Identity = 122/224 (54.46%), Postives = 164/224 (73.21%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG  GV+T+EEG    N L VVEGMQFDRGY+SPYFV + +KM  E EN  +LL DKKI++ RD++ +LE   + + P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L+D+AILTGG V+ +E+G+ L+      LG A K+V+ K+ TT++     Q  +  RV QIR  +E+A  DY+REKL ER+AKL+GGVAVI+VGA +E
Sbjct:  163 AEAMEKVGNEGVITVEEGSGLANELDVVEGMQFDRGYLSPYFVNNQDKMVAELENPYILLHDKKISSIRDMLPILEQVAKSSRPLLIVAEDVEGEALATLVVNTMRGIIKVAAVKAPGFGDRRKAMLEDMAILTGGRVVSEEIGMKLESTTLADLGQAKKIVIDKENTTMIDGAGQQSEIKARVEQIRRQMEDASSDYDREKLQERVAKLAGGVAVIKVGAGSE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH602_GLUDA (60 kDa chaperonin 2 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=groL2 PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.294e-65
Identity = 125/222 (56.31%), Postives = 165/222 (74.32%), Query Frame = 2
Query:   11 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A+ KVG+ GV+T+EE K  E  L VVEG+QFDRGYISPYFVT+SEK+  + EN  +L+ +KK+++ + L+ +LE+ ++   P+L IAED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L+DIAILTGG VI +++G+ L+ V    LG A ++V+ KD TTIV      DA+  RV QIR  IE    DY+REKL ER+AKL+GGVA+I+VG  TE
Sbjct:  165 AVQKVGKDGVITVEEAKGFETELDVVEGLQFDRGYISPYFVTNSEKLIADLENPYILIHEKKLSSLQPLLPLLENVVKSGRPLLSIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAILEDIAILTGGEVISEDLGIKLESVTLSQLGQARRIVIDKDNTTIVDGEGDADAIKGRVGQIRAQIEETTSDYDREKLQERLAKLAGGVAIIRVGGSTE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH601_RHOPS (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain BisB5) GN=groL1 PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.294e-65
Identity = 122/222 (54.95%), Postives = 167/222 (75.23%), Query Frame = 2
Query:   11 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            AM KVG  GV+T+EE KS E  L VVEGMQFDRGYISPYFVT+++KM VE+++  +L+ +KK++N  +L+ +LE  ++   P++I+AED+E EALATLVVN+LRG LK+AA+KAPGFG+R+   L DIAILTGG  I +++G+ ++ V  ++LG A KV++ K+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  165 AMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEFDDAYILINEKKLSNLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKMENVTLQMLGKAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_PARDP (60 kDa chaperonin OS=Paracoccus denitrificans (strain Pd 1222) GN=groL1 PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.608e-65
Identity = 125/224 (55.80%), Postives = 165/224 (73.66%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM +VG  GV+T+EE K  E  + VVEGMQFDRGY+SPYFVT+++KM  E E+  +LL +KK+++ + ++ +LE  I+   P+LI+AED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L DIAILTGG VI +++G+ L+ V  ++LG A KV + KD TTIV     +  +  RV+QIR  IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 AEAMQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_PARDE (60 kDa chaperonin OS=Paracoccus denitrificans GN=groL PE=1 SV=2)

HSP 1 Score: 247.284 bits (630), Expect = 5.608e-65
Identity = 125/224 (55.80%), Postives = 165/224 (73.66%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM +VG  GV+T+EE K  E  + VVEGMQFDRGY+SPYFVT+++KM  E E+  +LL +KK+++ + ++ +LE  I+   P+LI+AED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L DIAILTGG VI +++G+ L+ V  ++LG A KV + KD TTIV     +  +  RV+QIR  IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 AEAMQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_GALSU (60 kDa chaperonin, chloroplastic OS=Galdieria sulphuraria GN=groL PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.608e-65
Identity = 128/226 (56.64%), Postives = 171/226 (75.66%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNAR-DLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            A A+ KVGR GV+++EEGKS    L + EGM+F+RGYISPYFVTDS++M V  EN  +L+ DKKIT  + DL+ VLE   +   P+LIIAEDIE+EALATL+VNKLRG L + A+KAPGFG+R+   L+DIAILTGG +I ++ GL+LDKV   +LG A+KV++ K++TTI+ + + ++ V  R  QIR  IE  +  YE+EKL ER+AKL+GG+AVI+VGA TET
Sbjct:  162 ADAIEKVGREGVISIEEGKSTTTELEIKEGMKFERGYISPYFVTDSDRMEVVQENASVLITDKKITLVQQDLLPVLEQIAKTNKPLLIIAEDIEKEALATLIVNKLRGILNVVAVKAPGFGDRRKSILEDIAILTGGQLITEDAGLSLDKVDLSMLGQANKVIVNKESTTIISN-ANENNVKARCEQIRKQIEITDSSYEKEKLQERLAKLAGGIAVIKVGAATET 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_ERWCT (60 kDa chaperonin OS=Erwinia carotovora subsp. atroseptica GN=groL PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.608e-65
Identity = 127/224 (56.70%), Postives = 165/224 (73.66%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG   ++ L VVEGMQFDRGY+SPYF+   E  ++E E+  +LL DKKI+N R+++ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LT GTVI +E+GL L+K   E LG A +VV+ KDTT I+     + A+  RV QIR  IE+A  DY++EKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMEKVGKEGVITVEEGTGLQDELDVVEGMQFDRGYLSPYFINKPETGSIELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTAGTVISEEIGLELEKATLEDLGQAKRVVINKDTTIIIDGVGDEVAIQGRVTQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_BLOFL (60 kDa chaperonin OS=Blochmannia floridanus GN=groL PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.608e-65
Identity = 125/224 (55.80%), Postives = 163/224 (72.77%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG   ++ L VVEGMQFDRGY+SPYFV   E   VE E+  +LL DKKI+N R+++ +LE   +   P+LIIAED+E EALATLVVN +RG +K+ A+KAPGFG+R+   L DIAILT GTVI +E+GL L+K   E +G A +V++TKD TTI+     + ++  RVAQI    + A  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AQAMDKVGKEGVITVEEGSGLQDELDVVEGMQFDRGYLSPYFVNKPESGTVELEHPFILLADKKISNIREMLPILESVAKSGKPLLIIAEDVEGEALATLVVNNMRGIVKVTAVKAPGFGDRRKAMLQDIAILTSGTVISEEIGLELEKATLEDMGQAKRVLITKDATTIIDGVGNKSSIDSRVAQINQQRDEATSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_BACFO (60 kDa chaperonin OS=Bacteroides forsythus GN=groL PE=1 SV=3)

HSP 1 Score: 247.284 bits (630), Expect = 5.608e-65
Identity = 124/224 (55.36%), Postives = 164/224 (73.21%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KV + GV+T+EE K  E  + VVEGMQFDRGYIS YFVTD+EKM  ++EN  +L+ DKKI+  +DL+ +LE  ++    +LIIAEDI+ EALATLVVN+LRG LK+ A+KAPGFG+R+   L+DIAILTGGTVI +E G+ L+    ++LG+A KV + KD TTIV     + A+  R+ QI+  IE    DY++EKL ER+AKL+GGVAV+ VGA +E
Sbjct:  163 AEAMQKVKKEGVITVEEAKGTETTVEVVEGMQFDRGYISAYFVTDTEKMETQFENPYILIYDKKISVLKDLLPILEQMVQSGRALLIIAEDIDSEALATLVVNRLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVITEEKGMKLEDAKMDMLGSADKVTVNKDNTTIVKGNGDKAAIESRIGQIKAQIETTTSDYDKEKLQERLAKLAGGVAVLYVGAPSE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_AZOPC (60 kDa chaperonin OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=groL PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.608e-65
Identity = 126/224 (56.25%), Postives = 167/224 (74.55%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KV + GV+T+EE K  E  + VVEGMQFDRGYIS YFVT+++KM  + EN  +L+ DKKI+  +D++ +LE  I+   P+LIIAEDIE EALATLVVN+LRG+LK+ A+KAPGFG+R+ + L+DIA+LTGG VI +E GL L+ V  ++LG A KV ++KD T IV     + A+S RV+QI+T IE    DY+ EKL ER+AKL+GGVAV+ VGA +E
Sbjct:  163 AEAMKKVKKEGVITIEESKGIETYVDVVEGMQFDRGYISSYFVTNTDKMEADLENPYILIHDKKISVLKDILPILEKTIQTGRPMLIIAEDIESEALATLVVNRLRGSLKVCAVKAPGFGDRRKEMLEDIAVLTGGVVISEEKGLKLEGVTIDMLGTAEKVTISKDNTVIVNGAGEKSAISARVSQIKTQIEKTTSDYDSEKLQERLAKLAGGVAVLYVGAPSE 386          
The following BLAST results are available for this feature:
BLAST of FC920519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_ACIF24.294e-6554.4660 kDa chaperonin OS=Acidithiobacillus ferrooxidan... [more]
CH602_GLUDA4.294e-6556.3160 kDa chaperonin 2 OS=Gluconacetobacter diazotrop... [more]
CH601_RHOPS4.294e-6554.9560 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH60_PARDP5.608e-6555.8060 kDa chaperonin OS=Paracoccus denitrificans (str... [more]
CH60_PARDE5.608e-6555.8060 kDa chaperonin OS=Paracoccus denitrificans GN=g... [more]
CH60_GALSU5.608e-6556.6460 kDa chaperonin, chloroplastic OS=Galdieria sulp... [more]
CH60_ERWCT5.608e-6556.7060 kDa chaperonin OS=Erwinia carotovora subsp. atr... [more]
CH60_BLOFL5.608e-6555.8060 kDa chaperonin OS=Blochmannia floridanus GN=gro... [more]
CH60_BACFO5.608e-6555.3660 kDa chaperonin OS=Bacteroides forsythus GN=groL... [more]
CH60_AZOPC5.608e-6556.2560 kDa chaperonin OS=Azobacteroides pseudotrichony... [more]

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Properties
Property NameValue
Genbank descriptionC32009E02EF RVDevelop1 Citrus clementina cDNA clone C32009E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920519 ID=FC920519; Name=FC920519; organism=Citrus clementina; type=EST; length=679bp
CTCTGCCGGGGCCATGAGTAAAGTGGGACGTACGGGTGTGGTGACCCTTG
AAGAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAA
TTTGATCGTGGTTATATTTCTCCCTACTTCGTCACTGATAGTGAGAAAAT
GGCAGTTGAATATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTA
CCAATGCAAGGGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCA
TACCCAATTTTGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAAC
TCTTGTCGTGAACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAG
CTCCTGGTTTTGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATT
TTGACTGGAGGAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAA
AGTTGGCAAGGAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGG
ATACCACCACCATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAA
CGAGTGGCGCAAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGA
AAGGGAGAAGCTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTG
TCATACAGGTTGGAGCTCAAACTGAGACA
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