FC920519

Overview
NameFC920519
Unique NameFC920519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH601_AZOSB (60 kDa chaperonin 1 OS=Azoarcus sp. (strain BH72) GN=groL1 PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 7.325e-65
Identity = 127/224 (56.70%), Postives = 160/224 (71.43%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+GKS  N L VVEGMQFDRGY+SPYF+ + +K     EN  +LL DKKI+N RDL+ VLE   +   P+LIIAED++ EALATLVVN +RG LK  A+KAPGFG+R+   L+DIAILTGG VI +EVGL L+K   + LG A ++ + K+ T I+        +  RV QIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AQAMEKVGKEGVITVEDGKSLNNELDVVEGMQFDRGYLSPYFINNPDKQVAILENPFVLLFDKKISNIRDLLPVLEQVAKAGRPLLIIAEDVDGEALATLVVNNIRGILKTCAVKAPGFGDRRKAMLEDIAILTGGQVIAEEVGLTLEKATLQDLGQAKRIEIGKENTIIIDGAGEASRIEARVKQIRVQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_STRM5 (60 kDa chaperonin OS=Stenotrophomonas maltophilia (strain R551-3) GN=groL PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 9.566e-65
Identity = 122/224 (54.46%), Postives = 168/224 (75.00%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM +VG+ GV+T+EEG   +N L VV+GMQFDRGY+SPYF+ + +    + ++  +LL DKKI+N RDL+ VLE   +   P+LI+AE++E EALATLVVN +RG +K+ A+KAPGFG+R+   L+D+A+LTGGTVI +EVGL+L+K   + LG A KV ++K+ TTI+     + AV  RVAQI+T I++   DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 ADAMKEVGKEGVITVEEGSGLDNELDVVKGMQFDRGYLSPYFINNQQSQTADLDDPFILLHDKKISNVRDLLPVLEGVAKAGKPLLIVAEEVEGEALATLVVNTIRGIVKVVAVKAPGFGDRRKAMLEDMAVLTGGTVISEEVGLSLEKATIKDLGRAKKVQVSKENTTIIDGVGDKAAVDSRVAQIKTQIQDTSSDYDREKLQERVAKLAGGVAVIKVGASTE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_PELTS (60 kDa chaperonin OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=groL PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 9.566e-65
Identity = 125/225 (55.56%), Postives = 163/225 (72.44%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            A AM KVG+ GV+T+EE K     L +VEGM FDRGYISPY +TD++KM     +  +L+ DKKI+   DL+ +LE  ++   P+L+IAED+E EALATLV+NKLRG  +  A+KAPGFG+R+   L DIAILTGGTVI +EVGL LDK   + LG A+KV + K+ T IVG   + D ++KRVAQI+  IE    ++++EKL ER+AKL+GGVAVIQVGA TET
Sbjct:  162 ADAMEKVGKDGVITVEESKGTTTNLEIVEGMNFDRGYISPYMITDADKMEATLNDPYILITDKKISAVGDLLPLLEKVVQSGKPLLVIAEDVEGEALATLVLNKLRGTFQCVAVKAPGFGDRRKAMLQDIAILTGGTVITEEVGLKLDKATIDQLGRANKVRVKKEETIIVGGAGSTDEITKRVAQIKKQIEETTSEFDKEKLQERLAKLAGGVAVIQVGAATET 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_FUSNP (60 kDa chaperonin OS=Fusobacterium nucleatum subsp. polymorphum GN=groL PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 9.566e-65
Identity = 125/224 (55.80%), Postives = 163/224 (72.77%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM+KVG TGV+T+EE KS E  L  VEGMQFD+GY+SPY VTDSE+M  E +N  +LL DKKI++ ++L+ +LE  ++ + P+LI+A+DIE EAL TLV+NKLRG L + A+KAP FG+R+   L+DIAILTGG VI +E G+ L++   + LG A  V +TKD T IV  G  Q  +S RV  I+  IE    DY++EKL ER+AKLSGGVAVI+VGA TE
Sbjct:  161 AQAMAKVGETGVITVEEAKSLETTLETVEGMQFDKGYVSPYMVTDSERMTAELDNPLILLTDKKISSMKELLPLLEQTVQMSKPVLIVADDIEGEALTTLVINKLRGTLNVVAVKAPAFGDRRKAILEDIAILTGGEVISEEKGMKLEEATIQQLGKAKTVKVTKDLTVIVDGGGEQKDISARVNSIKAQIEETTSDYDKEKLQERLAKLSGGVAVIKVGAATE 384          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_FUSNN (60 kDa chaperonin OS=Fusobacterium nucleatum subsp. nucleatum GN=groL PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 9.566e-65
Identity = 125/224 (55.80%), Postives = 163/224 (72.77%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM+KVG TGV+T+EE KS E  L +VEGMQFD+GY+SPY VTDSE+M  E +N  +LL DKKI++ ++L+ +LE  ++ + P+LI+A+DIE EAL TLV+NKLRG L + A+KAP FG+R+   L+DIAILTGG VI +E G+ L++   E LG A  V +TKD T IV  G  Q  +S RV  I+  I     DY++EKL ER+AKLSGGVAVI+VGA TE
Sbjct:  161 AQAMAKVGETGVITVEEAKSLETTLEIVEGMQFDKGYVSPYMVTDSERMTAELDNPLILLTDKKISSMKELLPLLEQTVQMSKPVLIVADDIEGEALTTLVINKLRGTLNVVAVKAPAFGDRRKAILEDIAILTGGEVISEEKGMKLEEATIEQLGKAKTVKVTKDLTVIVDGGGQQKDISARVNSIKAQIAETTSDYDKEKLQERLAKLSGGVAVIKVGAATE 384          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_COLP3 (60 kDa chaperonin OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=groL PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 9.566e-65
Identity = 127/225 (56.44%), Postives = 169/225 (75.11%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDA-VSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG  GV+T+EEG++  + L VVEGMQFDRGY+SPYF+   E   VE EN  +LLVDKK++N R+L+  LE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L D+A LT GTVI +E+G+ L+K   E LG A +VV++KDTT I+ DG  ++A +  RV+QIR  IE++  DY++EKL ER+AKL+GGVAVI++GA TE
Sbjct:  163 ATAMDKVGAEGVITVEEGQALTDELDVVEGMQFDRGYLSPYFINKQENGTVELENPFILLVDKKVSNIRELLTTLEAVAKSGKPLLIIAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDVATLTAGTVISEEIGMELEKATLEDLGQAKRVVISKDTTIII-DGIGEEADIKARVSQIRGQIEDSSSDYDKEKLQERLAKLAGGVAVIKIGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH602_RHOP5 (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris (strain BisA53) GN=groL2 PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 9.566e-65
Identity = 122/222 (54.95%), Postives = 166/222 (74.77%), Query Frame = 2
Query:   11 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            AM KVG  GV+T+EE KS E  L VVEGMQFDRGYISPYFVT+++KM VE+++  +L+ +KK++N  +L+ +LE  ++   P++I+AED+E EALATLVVN+LRG LK+AA+KAPGFG+R+   L DIAILTGG  I +++G+ ++ V   +LG A KV++ K+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  165 AMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEFDDAYILINEKKLSNLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKMENVTLAMLGKAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH601_RHOPB (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain BisB18) GN=groL1 PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 9.566e-65
Identity = 122/222 (54.95%), Postives = 166/222 (74.77%), Query Frame = 2
Query:   11 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            AM KVG  GV+T+EE KS E  L VVEGMQFDRGYISPYFVT+++KM VE+++  +L+ +KK++N  +L+ +LE  ++   P++I+AED+E EALATLVVN+LRG LK+AA+KAPGFG+R+   L DIAILTGG  I +++G+ ++ V   +LG A KV++ K+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  165 AMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEFDDAYILINEKKLSNLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKMENVTLAMLGKAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH601_RHOPA (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris GN=groL1 PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 9.566e-65
Identity = 122/224 (54.46%), Postives = 168/224 (75.00%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG  GV+T+EE KS E  + +VEGM+FDRGY+SPYFVT++EKM VE ++  +LL +KK++  + ++ VLE  ++   P+LIIAED+E EALATLVVN+LRG LK++A+KAPGFG+R+   L+DIAILTGG +I +++G+ L+ V  ++LG A KVV+ K+ TTIV     +  +  RV+QI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 AQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQSMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVSAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLETVTLKMLGRAKKVVIDKENTTIVNGAGKKPEIEARVSQIKAQIEETSSDYDREKLQERLAKLAGGVAVIRVGGATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH601_MOOTA (60 kDa chaperonin 1 OS=Moorella thermoacetica (strain ATCC 39073) GN=groL1 PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 9.566e-65
Identity = 125/225 (55.56%), Postives = 166/225 (73.78%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            A AM KVG+ GV+T+EE K     + VVEGM+FDRGY+SPYFVT++E M  E+E   +L+ +KKI+   DL+ +LE  +R   P++IIAEDIE EALATLVVNKLRG L  AA+KAPGFG+R+   ++DIAILTGGT + +++G+ L+ V   +LG A KV + K+ TTIV     ++AV  R+AQI+  IE  + DY+REKL ER+AKL+GGVAVI+VGA TET
Sbjct:  162 ADAMEKVGKDGVITVEESKGTATTVEVVEGMEFDRGYVSPYFVTNTEAMEAEFEEPYILIHEKKISAINDLLPLLEKVVRTGKPLVIIAEDIEGEALATLVVNKLRGTLNCAAVKAPGFGDRRKAMMEDIAILTGGTFLSEDLGVKLENVDLNMLGRAKKVKIAKEKTTIVEGYGKKEAVDGRIAQIKKQIEETDSDYDREKLQERLAKLAGGVAVIRVGAATET 386          
The following BLAST results are available for this feature:
BLAST of FC920519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_AZOSB7.325e-6556.7060 kDa chaperonin 1 OS=Azoarcus sp. (strain BH72) ... [more]
CH60_STRM59.566e-6554.4660 kDa chaperonin OS=Stenotrophomonas maltophilia ... [more]
CH60_PELTS9.566e-6555.5660 kDa chaperonin OS=Pelotomaculum thermopropionic... [more]
CH60_FUSNP9.566e-6555.8060 kDa chaperonin OS=Fusobacterium nucleatum subsp... [more]
CH60_FUSNN9.566e-6555.8060 kDa chaperonin OS=Fusobacterium nucleatum subsp... [more]
CH60_COLP39.566e-6556.4460 kDa chaperonin OS=Colwellia psychrerythraea (st... [more]
CH602_RHOP59.566e-6554.9560 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH601_RHOPB9.566e-6554.9560 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH601_RHOPA9.566e-6554.4660 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH601_MOOTA9.566e-6555.5660 kDa chaperonin 1 OS=Moorella thermoacetica (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32009E02EF RVDevelop1 Citrus clementina cDNA clone C32009E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920519 ID=FC920519; Name=FC920519; organism=Citrus clementina; type=EST; length=679bp
CTCTGCCGGGGCCATGAGTAAAGTGGGACGTACGGGTGTGGTGACCCTTG
AAGAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAA
TTTGATCGTGGTTATATTTCTCCCTACTTCGTCACTGATAGTGAGAAAAT
GGCAGTTGAATATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTA
CCAATGCAAGGGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCA
TACCCAATTTTGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAAC
TCTTGTCGTGAACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAG
CTCCTGGTTTTGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATT
TTGACTGGAGGAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAA
AGTTGGCAAGGAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGG
ATACCACCACCATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAA
CGAGTGGCGCAAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGA
AAGGGAGAAGCTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTG
TCATACAGGTTGGAGCTCAAACTGAGACA
back to top