FC920519

Overview
NameFC920519
Unique NameFC920519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH601_BURXL (60 kDa chaperonin 1 OS=Burkholderia xenovorans (strain LB400) GN=groL1 PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 9.566e-65
Identity = 125/224 (55.80%), Postives = 161/224 (71.88%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+GKS ++ L VVEGMQFDRGY+SPYF+ + +K     EN  +LL DKK++N RDL+ +LE   +   P+LIIAED+E EALATLVVN +RG LK  A+KAPGFG+R+   L+DIAILTGG VI +E GL L+K     LG A ++ + K+ TTI+        +  RV Q+RT IE A  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMDKVGKEGVITVEDGKSLQDELDVVEGMQFDRGYLSPYFINNPDKQVAVLENPFVLLHDKKVSNIRDLLPILEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVIAEETGLTLEKATLAELGQAKRIEVAKENTTIIDGAGEAANIEARVKQVRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_BURP8 (60 kDa chaperonin OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=groL PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.249e-64
Identity = 125/224 (55.80%), Postives = 162/224 (72.32%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+GKS ++ L VVEGMQFDRGY+SPYF+ + +K     +N  +LL DKK++N RDL+ VLE   +   P+LIIAED+E EALATLVVN +RG LK  A+KAPGFG+R+   L+DIAILTGG VI +E GL L+K   + LG A ++ + K+ TTI+        +  RV Q+RT IE A  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMDKVGKEGVITVEDGKSLQDELDVVEGMQFDRGYLSPYFINNPDKQVAVLDNPFVLLHDKKVSNIRDLLPVLEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVIAEETGLTLEKATLQELGQAKRIEVGKENTTIIDGAGEAANIEARVKQVRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH604_BRASB (60 kDa chaperonin 4 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=groL4 PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.249e-64
Identity = 123/224 (54.91%), Postives = 166/224 (74.11%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG  GV+T+EE KS E  L VVEGMQFDRGYISPYFVT+++KM VE ++  +L+ +KK+++  +L+ +LE  ++   P++I+AED+E EALATLVVN+LRG LK+AA+KAPGFG+R+   L DIAILTGG  I +++G+ L+ V   +LG A KV++ K+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 ADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVNLSMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH603_NITWN (60 kDa chaperonin 3 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=groL3 PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.249e-64
Identity = 124/224 (55.36%), Postives = 164/224 (73.21%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG  GV+T+EE KS E  + +VEGM+FDRGY+SPYFVT++EKMA E ++  +LL +KK+T  + L+ VLE  ++   P+LI+AED+E EALA LVVN+LRG LK+AA+KAPGFG+R+   L+DIAILT G +I DE+G+ L+ V   +LG A KV++ K+ TTIV     +  +  RV QIR  IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 AQAMQKVGNDGVITVEENKSLETDVDIVEGMKFDRGYLSPYFVTNAEKMAAELDDAYILLHEKKLTGLQALLPVLEAVVKSGKPLLIVAEDVEGEALAALVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTSGQLISDELGMKLENVTLNMLGRAKKVLIDKENTTIVNGAGKKKDIEARVGQIRARIEETTSDYDREKLQERLAKLAGGVAVIRVGGATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH602_POLNA (60 kDa chaperonin 2 OS=Polaromonas naphthalenivorans (strain CJ2) GN=groL2 PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.249e-64
Identity = 129/225 (57.33%), Postives = 168/225 (74.67%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDA-VSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+GKS E+ L VVEGMQFDRGY+SPYF+ + EK +   +N  +LL DKKI+N RDL+  LE   +   P+LIIAE++E EALATLVVN LRG LK+ A+KAPGFG+R+   L+DIA+LTGG VI +EVG++L+KV    LG A ++ + K+ T I+ DGS + A +  RV Q+R  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 ADAMDKVGKEGVITVEDGKSLESELDVVEGMQFDRGYLSPYFINNPEKQSALLDNPFVLLYDKKISNIRDLLPTLEQVAKAGRPLLIIAEEVEGEALATLVVNTLRGILKVVAVKAPGFGDRRKAMLEDIAVLTGGKVIAEEVGMSLEKVTLADLGQAKRIEVGKENTIII-DGSGEAADIEARVKQVRVQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH602_BRASO (60 kDa chaperonin 2 OS=Bradyrhizobium sp. (strain ORS278) GN=groL2 PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.249e-64
Identity = 123/224 (54.91%), Postives = 166/224 (74.11%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG  GV+T+EE KS E  L VVEGMQFDRGYISPYFVT+++KM VE ++  +L+ +KK+++  +L+ +LE  ++   P++I+AED+E EALATLVVN+LRG LK+AA+KAPGFG+R+   L DIAILTGG  I +++G+ L+ V   +LG A KV++ K+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 ADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVNLSMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH601_RHOFD (60 kDa chaperonin 1 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=groL1 PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.249e-64
Identity = 125/224 (55.80%), Postives = 164/224 (73.21%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+GKS ++ L VVEGMQFDRGY+SPYF+ + EK A   +N  +LL DKKI+N RDL+  LE   +   P+LII+ED+E EALATLVVN +RG LK+ A+KAPGFG+R+   L+DIAILTGG VI +EVG++L+KV    LG+A ++ + K+ T I+        +  RV Q+R  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 ADAMDKVGKEGVITVEDGKSLDSELDVVEGMQFDRGYLSPYFINNPEKQAALLDNPFVLLYDKKISNIRDLLPTLEQVAKSGRPLLIISEDVEGEALATLVVNTIRGILKVVAVKAPGFGDRRKAMLEDIAILTGGKVIAEEVGMSLEKVTLADLGSAKRIEVGKENTIIIDGAGAAADIEARVKQVRVQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH601_GLOVI (60 kDa chaperonin 1 OS=Gloeobacter violaceus GN=groL1 PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.249e-64
Identity = 128/225 (56.89%), Postives = 163/225 (72.44%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            A AM  VG+ GV+T+EE KS    L V EGMQFDRGY+SPY VTD E+M   ++   LL+ DKKI+   DL+ +LE   R   P++IIAEDIE+EALATLVVNKLRG L +AA+KAPGFG+R+   L DIA+LT G VI ++ G+ L+ V  + LG A K+ +TKD TTIV +G+ + AV  R AQI+  IE  + +Y+REKL ER+AKLSGGVAVI+VGA TET
Sbjct:  162 ARAMETVGKEGVITVEESKSLTTELEVTEGMQFDRGYVSPYLVTDQERMEAVFDEPFLLITDKKISIITDLVPILEKVARAGRPLVIIAEDIEKEALATLVVNKLRGVLNVAAVKAPGFGDRRKAMLQDIAVLTDGEVISEDTGIKLENVTTDQLGKARKMTITKDNTTIVAEGN-EAAVKARCAQIKQQIEETDSEYDREKLQERLAKLSGGVAVIKVGAATET 385          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_VEREI (60 kDa chaperonin OS=Verminephrobacter eiseniae (strain EF01-2) GN=groL PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.632e-64
Identity = 125/224 (55.80%), Postives = 162/224 (72.32%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+GKS E+ L VVEGMQFDRGY+SPYF+ + +K A   +N  +LL DKKI+N RDL+  LE   +   P+L+IAE++E EALATLVVN +RG LK+ A+KAPGFG+R+   L+DIAILTGG VI +EVGL L+KV    LG A ++ + K+ T I+        +  RV Q+R  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 ADAMDKVGKEGVITVEDGKSLESELDVVEGMQFDRGYLSPYFINNPDKQAALLDNPFVLLFDKKISNIRDLLPTLEQVAKAGRPLLVIAEEVEGEALATLVVNTIRGILKVVAVKAPGFGDRRKAMLEDIAILTGGKVIAEEVGLTLEKVTLADLGQAKRIEVGKENTIIIDGAGAAGDIEARVKQVRVQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_UNCTG (60 kDa chaperonin OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=groL PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.632e-64
Identity = 125/224 (55.80%), Postives = 167/224 (74.55%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEGKS+E  L VVEGMQFDRGY S YFVTD+E+M    E+  +++ DKKI++ ++++ +LE  I+     +IIAEDIE EALATLV+NK+RG LK+ A+KAPGFG+R+ + L DIAILTGGTVI +E GL LDK   ++LG A ++V+ K+ TTIV     +  +  R+AQIR  IE+ + DY++EKL ER+AKL GGVAV+ VGA TE
Sbjct:  161 ADAMEKVGKDGVITVEEGKSSETTLDVVEGMQFDRGYSSHYFVTDTERMQAILEDPYIIITDKKISSMQEILPLLEKIIQTGKSFMIIAEDIEGEALATLVLNKIRGTLKVIAVKAPGFGDRRKEMLQDIAILTGGTVITEETGLKLDKATIDLLGQAKRIVVDKENTTIVSGLGDKKEIEARIAQIRKQIEDTKSDYDKEKLQERLAKLVGGVAVVNVGAATE 384          
The following BLAST results are available for this feature:
BLAST of FC920519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_BURXL9.566e-6555.8060 kDa chaperonin 1 OS=Burkholderia xenovorans (st... [more]
CH60_BURP81.249e-6455.8060 kDa chaperonin OS=Burkholderia phymatum (strain... [more]
CH604_BRASB1.249e-6454.9160 kDa chaperonin 4 OS=Bradyrhizobium sp. (strain ... [more]
CH603_NITWN1.249e-6455.3660 kDa chaperonin 3 OS=Nitrobacter winogradskyi (s... [more]
CH602_POLNA1.249e-6457.3360 kDa chaperonin 2 OS=Polaromonas naphthalenivora... [more]
CH602_BRASO1.249e-6454.9160 kDa chaperonin 2 OS=Bradyrhizobium sp. (strain ... [more]
CH601_RHOFD1.249e-6455.8060 kDa chaperonin 1 OS=Rhodoferax ferrireducens (s... [more]
CH601_GLOVI1.249e-6456.8960 kDa chaperonin 1 OS=Gloeobacter violaceus GN=gr... [more]
CH60_VEREI1.632e-6455.8060 kDa chaperonin OS=Verminephrobacter eiseniae (s... [more]
CH60_UNCTG1.632e-6455.8060 kDa chaperonin OS=Uncultured termite group 1 ba... [more]

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Properties
Property NameValue
Genbank descriptionC32009E02EF RVDevelop1 Citrus clementina cDNA clone C32009E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920519 ID=FC920519; Name=FC920519; organism=Citrus clementina; type=EST; length=679bp
CTCTGCCGGGGCCATGAGTAAAGTGGGACGTACGGGTGTGGTGACCCTTG
AAGAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAA
TTTGATCGTGGTTATATTTCTCCCTACTTCGTCACTGATAGTGAGAAAAT
GGCAGTTGAATATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTA
CCAATGCAAGGGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCA
TACCCAATTTTGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAAC
TCTTGTCGTGAACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAG
CTCCTGGTTTTGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATT
TTGACTGGAGGAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAA
AGTTGGCAAGGAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGG
ATACCACCACCATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAA
CGAGTGGCGCAAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGA
AAGGGAGAAGCTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTG
TCATACAGGTTGGAGCTCAAACTGAGACA
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