FC920519

Overview
NameFC920519
Unique NameFC920519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_THEYD (60 kDa chaperonin OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=groL PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.632e-64
Identity = 125/224 (55.80%), Postives = 160/224 (71.43%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EE K     L +VEGMQFDRGYISPYF+TD E++    E+  +L+ DKKI+  +DL+ +LE   R   P+LIIAED+E EALATLVVNKLRG L++ A+KAPGFGER+   L+DIAILTGGTVI +++GL L+ V  E LG A K+++ KD TTIV        +  R+ QI+  I+    DY+REKL ER+AKL+GGVA I VGA TE
Sbjct:  163 AEAMDKVGKDGVITVEEAKGMATTLDIVEGMQFDRGYISPYFITDPERLECILEDAFVLIHDKKISTMKDLLPILEQIARMGRPLLIIAEDVEGEALATLVVNKLRGVLQVCAVKAPGFGERRKAMLEDIAILTGGTVISEDIGLKLENVKVEDLGKAKKIIIDKDNTTIVEGAGDPQKIQARIKQIKVQIDETTSDYDREKLQERLAKLAGGVARINVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_PROA2 (60 kDa chaperonin OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=groL PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.632e-64
Identity = 125/224 (55.80%), Postives = 161/224 (71.88%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EE K  +  L VVEGMQFDRGY+SPYFVT+SEKM  + E+  +L+ DKKI+N ++L+ VLE   +   P++IIAEDIE EALATLVVNKLRG LK+ A+KAPGFG+R+   L+DIAILTGGTVI +E G  L+      LG A+ + + KD TTIV      D +  R+ +I+  IE +  DY+ EKL ER+AKLSGGVAV+ +GA TE
Sbjct:  163 AEAMDKVGKDGVITVEEAKGMDTELTVVEGMQFDRGYLSPYFVTNSEKMDADLEDPYILIYDKKISNMKELLPVLEKTAQSGRPLMIIAEDIEGEALATLVVNKLRGTLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEEKGYKLENATISYLGQAASITVDKDNTTIVDGKGQADDIKARIGEIKGQIEKSTSDYDTEKLQERLAKLSGGVAVLNIGASTE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_LEGPA (60 kDa chaperonin OS=Legionella pneumophila (strain Paris) GN=groL PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.632e-64
Identity = 122/224 (54.46%), Postives = 166/224 (74.11%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+G   EN L VVEGMQFDRGYISPYF+ + + M+ E E+  +LLVDKK+++ R++++VLE   +   P+LIIAED+E EALATLVVN +RG +K+ A+KAPGFG+R+   L DIAILT G VI +E+G +L+    E LG+A ++V+TK+ TTI+        ++ R+AQIR  +E    DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  162 AEAMEKVGKEGVITVEDGNGLENELSVVEGMQFDRGYISPYFINNQQNMSCELEHPFILLVDKKVSSIREMLSVLEGVAKSGRPLLIIAEDVEGEALATLVVNNMRGIVKVCAVKAPGFGDRRKAMLQDIAILTKGQVISEEIGKSLEGATLEDLGSAKRIVVTKENTTIIDGEGKATEINARIAQIRAQMEETTSDYDREKLQERVAKLAGGVAVIKVGAATE 385          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_BUCPP (60 kDa chaperonin OS=Buchnera aphidicola subsp. Pterocomma populeum GN=groL PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.632e-64
Identity = 123/224 (54.91%), Postives = 167/224 (74.55%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG  GV+T+EEG   ++ L VV+GMQFDRGY+SPYF+  SE   VE EN  +L+ DKKI+N R+++ +LE   +   P+LII+ED+E EALATLVVN +RG +K+AA+KAPGFG+ +   L DI+ILT GTVI +E+ + L+K   E LG A +VV++KDTTTI+G    + A+  R+ QIR  I++A  DY++EKLNER+AKL+GGVAV++VGA TE
Sbjct:  163 AEAMEKVGNDGVITVEEGTGLQDELEVVKGMQFDRGYLSPYFINKSETGIVELENPYILMADKKISNIREMLPILESVAKSGKPLLIISEDLEGEALATLVVNSMRGIVKVAAVKAPGFGDCRKAMLQDISILTNGTVISEELAMELEKSTLEDLGQAKRVVISKDTTTIIGGVGEKHAIQARINQIRQEIQDASSDYDKEKLNERLAKLAGGVAVLKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH602_TRIEI (60 kDa chaperonin 2 OS=Trichodesmium erythraeum (strain IMS101) GN=groL2 PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.632e-64
Identity = 121/225 (53.78%), Postives = 166/225 (73.78%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            A AM KVG+ GV++LEEGKS +  L + EGM+FD+GYISPYF TD E+M    E  ++L+ DKKI   +DL+ VLE   R   P+LI+AEDIE+EALATLVVN+LRG + +AA+KAPGFG+R+   L+DIA+LTGG VI ++ GL L+    ++LG A ++ +TKD TTIV +G+ ++ V  R  QIR  ++  +  Y++EKL ER+AKL+GGVAV++VGA TET
Sbjct:  162 AEAMDKVGKEGVISLEEGKSMQTELEITEGMRFDKGYISPYFATDMERMEASLEEPQILITDKKIALVQDLVPVLEQVARSGKPLLILAEDIEKEALATLVVNRLRGVVNVAAVKAPGFGDRRKAMLEDIAVLTGGQVITEDAGLKLENAKLDMLGKARRITITKDNTTIVAEGNEKE-VKARCEQIRRQMDETDSSYDKEKLQERLAKLAGGVAVVKVGAATET 385          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH602_NOCFA (60 kDa chaperonin 2 OS=Nocardia farcinica GN=groL2 PE=3 SV=2)

HSP 1 Score: 245.743 bits (626), Expect = 1.632e-64
Identity = 128/224 (57.14%), Postives = 164/224 (73.21%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EE  +    L + EGM+FD+GYIS YFVTD E+     E+  +LLV  K++  +DL+ +LE  I+   P+LIIAED+E EAL+TLVVNK+RG  K  A+KAPGFG+R+   L DIAILTGG VI +EVGL+L+  G E+LG A KVV+TKD TTIV      +A+  RVAQIRT IEN++ DY+REKL ER+AKL+GGVAVI+ GA TE
Sbjct:  161 AEAMDKVGKEGVITVEESNTFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVGSKVSTVKDLLPLLEKVIQAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAQLADIAILTGGEVISEEVGLSLETAGIELLGQARKVVVTKDETTIVEGAGDAEAIKGRVAQIRTEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATE 384          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_LEGPC (60 kDa chaperonin OS=Legionella pneumophila (strain Corby) GN=groL PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.131e-64
Identity = 121/224 (54.02%), Postives = 166/224 (74.11%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+G   EN L VVEGMQFDRGYISPYF+ + + M+ E E+  +LLVDKK+++ R++++VLE   +   P+LIIAED+E EALATLVVN +RG +K+ A+KAPGFG+R+   L DIAILT G VI +E+G +L+    E LG+A ++V+TK+ TT++        ++ R+AQIR  +E    DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  162 AEAMEKVGKEGVITVEDGNGLENELSVVEGMQFDRGYISPYFINNQQNMSCELEHPFILLVDKKVSSIREMLSVLEGVAKSGRPLLIIAEDVEGEALATLVVNNMRGIVKVCAVKAPGFGDRRKAMLQDIAILTKGQVISEEIGKSLEGATLEDLGSAKRIVVTKENTTVIDGEGKATEINARIAQIRAQMEETTSDYDREKLQERVAKLAGGVAVIKVGAATE 385          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_BUCBP (60 kDa chaperonin OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=groL PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.131e-64
Identity = 123/224 (54.91%), Postives = 166/224 (74.11%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG   ++ L VV+GMQFDRGY+SPYF+   E   VE EN  +L+ DKKI+N R+L+ +LE   +   P+LII+ED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DI+ILT G+VI +E+ + L+K   E LG A +VV+ KDTTTI+G    +  +  R++QIR  I+ A  DY++EKLNER+AKLSGGVAV++VGA TE
Sbjct:  163 ADAMDKVGKDGVITVEEGTGLQDELEVVKGMQFDRGYLSPYFINKPETGIVELENPYILMADKKISNVRELLPILEAVAKSGKPLLIISEDLEGEALATLVVNSMRGIVKVAAVKAPGFGDRRKAMLQDISILTSGSVISEELAMELEKSTLEDLGQAKRVVINKDTTTIIGGIGEKYNIQSRISQIRQQIQEATSDYDKEKLNERLAKLSGGVAVLKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_VARPS (60 kDa chaperonin OS=Variovorax paradoxus (strain S110) GN=groL PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 128/225 (56.89%), Postives = 166/225 (73.78%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIV-GDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+GKS ++ L VVEGMQFDRGY+SPYF+ + EK +   +N  +LL DKKI+N RDL+  LE   +   P+LIIAE++E EALATLVVN +RG LK+ A+KAPGFG+R+   L+DIAILTGG VI +EVGL L+KV    LG A ++ + K+ T I+ G G+  D +  RV Q+R  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 ADAMDKVGKEGVITVEDGKSLDSELDVVEGMQFDRGYLSPYFINNPEKQSALLDNPFVLLFDKKISNIRDLLPTLEQVAKAGRPLLIIAEEVEGEALATLVVNTIRGILKVVAVKAPGFGDRRKAMLEDIAILTGGKVIAEEVGLTLEKVTLADLGQAKRIEVGKENTIIIDGSGAAAD-IEARVKQVRVQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_THEEB (60 kDa chaperonin OS=Thermosynechococcus elongatus (strain BP-1) GN=groL PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 125/225 (55.56%), Postives = 165/225 (73.33%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            A AM KVG+ GV++LEEGKS    L V EGM+FD+GYISPYF TD+E+M    +   +L+ DKKIT  +DL+ +LE   R   P++IIAEDIE+EALATLVVN+LRG L +AA+KAPGFG+R+   L+DIA+LT G VI ++ GL L+    ++LG A ++ +TKD TTIV +G+ + AV  R  QIR  IE  +  Y++EKL ER+AKL+GGVAVI+VGA TET
Sbjct:  162 ADAMDKVGKEGVISLEEGKSMTTELEVTEGMRFDKGYISPYFATDTERMEAVLDEPFVLVTDKKITLVQDLVPILEQVARAGKPLVIIAEDIEKEALATLVVNRLRGVLNVAAVKAPGFGDRRKAMLEDIAVLTAGQVITEDAGLKLENAKLDMLGKARRITITKDHTTIVAEGN-EKAVKARCEQIRRQIEETDSSYDKEKLQERLAKLAGGVAVIKVGAATET 385          
The following BLAST results are available for this feature:
BLAST of FC920519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_THEYD1.632e-6455.8060 kDa chaperonin OS=Thermodesulfovibrio yellowsto... [more]
CH60_PROA21.632e-6455.8060 kDa chaperonin OS=Prosthecochloris aestuarii (s... [more]
CH60_LEGPA1.632e-6454.4660 kDa chaperonin OS=Legionella pneumophila (strai... [more]
CH60_BUCPP1.632e-6454.9160 kDa chaperonin OS=Buchnera aphidicola subsp. Pt... [more]
CH602_TRIEI1.632e-6453.7860 kDa chaperonin 2 OS=Trichodesmium erythraeum (s... [more]
CH602_NOCFA1.632e-6457.1460 kDa chaperonin 2 OS=Nocardia farcinica GN=groL2... [more]
CH60_LEGPC2.131e-6454.0260 kDa chaperonin OS=Legionella pneumophila (strai... [more]
CH60_BUCBP2.131e-6454.9160 kDa chaperonin OS=Buchnera aphidicola subsp. Ba... [more]
CH60_VARPS2.783e-6456.8960 kDa chaperonin OS=Variovorax paradoxus (strain ... [more]
CH60_THEEB2.783e-6455.5660 kDa chaperonin OS=Thermosynechococcus elongatus... [more]

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Properties
Property NameValue
Genbank descriptionC32009E02EF RVDevelop1 Citrus clementina cDNA clone C32009E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920519 ID=FC920519; Name=FC920519; organism=Citrus clementina; type=EST; length=679bp
CTCTGCCGGGGCCATGAGTAAAGTGGGACGTACGGGTGTGGTGACCCTTG
AAGAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAA
TTTGATCGTGGTTATATTTCTCCCTACTTCGTCACTGATAGTGAGAAAAT
GGCAGTTGAATATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTA
CCAATGCAAGGGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCA
TACCCAATTTTGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAAC
TCTTGTCGTGAACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAG
CTCCTGGTTTTGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATT
TTGACTGGAGGAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAA
AGTTGGCAAGGAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGG
ATACCACCACCATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAA
CGAGTGGCGCAAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGA
AAGGGAGAAGCTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTG
TCATACAGGTTGGAGCTCAAACTGAGACA
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