FC920519

Overview
NameFC920519
Unique NameFC920519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_STRSV (60 kDa chaperonin OS=Streptococcus sanguinis (strain SK36) GN=groL PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 122/223 (54.71%), Postives = 166/223 (74.44%), Query Frame = 2
Query:   11 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            AM KVG  GV+T+EE K  E  L VVEGMQFDRGY+S Y VTD+EKM  E +N  +L+ DKKI+N ++++ +LE+ ++   P+LI+A+D++ EAL TLV+NK+RG   + A+KAPGFG+R+   L+DIAILTGGTVI D++GL L     E LG ASKV + KD+T IV      +A++ RVA I++ IE++  +++REKL ER+AKLSGGVAVI+VGA TET
Sbjct:  163 AMEKVGNDGVITIEESKGMETELDVVEGMQFDRGYLSQYMVTDNEKMVAELDNPYILITDKKISNIQEILPLLENILKTNRPLLIVADDVDGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGTVITDDLGLELKDATIEALGQASKVTVDKDSTVIVEGSGNPEAIANRVAVIKSQIESSTSEFDREKLQERLAKLSGGVAVIKVGAATET 385          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_STRSA (60 kDa chaperonin OS=Streptococcus sanguis GN=groL PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 122/223 (54.71%), Postives = 166/223 (74.44%), Query Frame = 2
Query:   11 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            AM KVG  GV+T+EE K  E  L VVEGMQFDRGY+S Y VTD+EKM  E +N  +L+ DKKI+N ++++ +LE+ ++   P+LI+A+D++ EAL TLV+NK+RG   + A+KAPGFG+R+   L+DIAILTGGTVI D++GL L     E LG ASKV + KD+T IV      +A++ RVA I++ IE++  +++REKL ER+AKLSGGVAVI+VGA TET
Sbjct:  163 AMEKVGNDGVITIEESKGMETELDVVEGMQFDRGYLSQYMVTDNEKMVAELDNPYILITDKKISNIQEILPLLENILKTNRPLLIVADDVDGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGTVITDDLGLELKDATIEALGQASKVTVDKDSTVIVEGSGNPEAIANRVAVIKSQIESSTSEFDREKLQERLAKLSGGVAVIKVGAATET 385          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_STRAP (60 kDa chaperonin OS=Streptococcus anginosus GN=groL PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 122/223 (54.71%), Postives = 167/223 (74.89%), Query Frame = 2
Query:   11 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            AM KVG  GV+T+EE K  E  L VVEGMQFDRGY+S Y VTD+EKM  + +N  +L+ DKKI+N ++++ +LE+ ++ + P+LIIA+D++ EAL TLV+NK+RG   + A+KAPGFG+R+   L+DIAILTGGTVI +++GL L     E LG ASKV + KD+T IV      +A++ RVA I++ IE++  D++REKL ER+AKLSGGVAVI+VGA TET
Sbjct:  163 AMEKVGNDGVITIEESKGMETELDVVEGMQFDRGYLSQYMVTDNEKMVADLDNPYILITDKKISNIQEILPLLENILKTSRPLLIIADDVDGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAMLEDIAILTGGTVITEDLGLELKDATIEALGQASKVTVDKDSTVIVEGSGDAEAIANRVAVIKSQIESSTSDFDREKLQERLAKLSGGVAVIKVGAATET 385          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_RHOMR (60 kDa chaperonin OS=Rhodothermus marinus GN=groL PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 124/224 (55.36%), Postives = 160/224 (71.43%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A A  KVG+ GV+T+EE K  E  L VVEGMQFDRGY+SPYFVT+ + M    E+  +L+ DKKI+  +DL+ +LE  ++   P+LIIAED+E EALATLVVNKLRG LK+AA+KAPGFG+R+   L+DIAILTGGTVI +E G  L+    + LG A ++++ KD TTIVG       +  R  QIR  IE    DY+REKL ER+AKL+GGVAV+++GA TE
Sbjct:  163 ADAFEKVGKDGVITVEEAKGTETTLEVVEGMQFDRGYLSPYFVTNPDTMEAVLEDAYILIHDKKISAMKDLLPILEKVVQTGRPLLIIAEDVEGEALATLVVNKLRGVLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEEKGYRLENATLDYLGQAERIIVDKDNTTIVGGKGDPAQIKARANQIRQQIEETTSDYDREKLQERLAKLAGGVAVLKIGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_RHOCA (60 kDa chaperonin OS=Rhodobacter capsulatus GN=groL PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 123/224 (54.91%), Postives = 165/224 (73.66%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A A  KVG  GV+T+EE K  +  + VVEGMQFDRGY+SPYFVT+ +KM  + E+  +LL +KK+++ + ++ +LE  I+   P++I+AED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L DIAILTGG VI D++G+ L+ V  ++LG A KV ++K+ TTIV     +  ++ RVA IRT IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 ADASQKVGNEGVITVEENKGMDTEVEVVEGMQFDRGYLSPYFVTNPDKMIADLEDAYILLHEKKLSSLQPMVPLLEAVIQSTRPLIIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISDDLGMKLENVTLDMLGRAKKVTISKENTTIVDGHGDKAEINARVAHIRTQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_PHATR (60 kDa chaperonin, chloroplastic OS=Phaeodactylum tricornutum GN=groL PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 121/226 (53.54%), Postives = 170/226 (75.22%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNAR-DLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            A A+SKVG+ GV++LEEGK     L + EGM+ ++G+ISPYF+T++EKM V Y+N  +LL DK+IT  + DL+ +LE   +   P+LIIAED+E+EALATL++NKLRG + + A++APGFGE + Q L+DIAILTGGTVI  + GL+LD +   +LG A ++++ KD+TTIV DG T + ++ R  Q+R  +  A+  YE+EKL +RIAKLSGG+AVI+VGA TET
Sbjct:  162 ADALSKVGKEGVISLEEGKGIVTELEITEGMKLEKGFISPYFITNTEKMEVSYDNPYILLTDKRITLVQQDLLPILEQITKTKRPLLIIAEDVEKEALATLILNKLRGIINVVAVRAPGFGELRKQMLEDIAILTGGTVITQDAGLSLDNIQLNLLGQARRIIVNKDSTTIVSDGQTLNEINIRCEQLRKQVNIADTGYEKEKLQDRIAKLSGGIAVIRVGAVTET 387          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_GEOTN (60 kDa chaperonin OS=Geobacillus thermodenitrificans (strain NG80-2) GN=groL PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 126/225 (56.00%), Postives = 160/225 (71.11%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            A AM +VG  GV+TLEE K     L VVEGMQFDRGY+SPY +TD+EKM    EN  +L+ DKK++N ++L+ VLE  ++   P+LIIAED+E EALATLVVNKLRG     A+KAPGFG+R+   L+DIAILTGG VI +E+G  L       LG ASKVV+TK+TTTIV      + +  R+ QIR  +E    +++REKL ER+AKL+GGVAVI+VGA TET
Sbjct:  161 AEAMERVGNDGVITLEESKGFTTELDVVEGMQFDRGYVSPYMITDTEKMEAVLENPYILITDKKVSNIQELLPVLEQVVQQGRPLLIIAEDVEGEALATLVVNKLRGTFNAVAVKAPGFGDRRKAMLEDIAILTGGEVISEELGRELKSTTVASLGRASKVVVTKETTTIVEGAGDSERIKARINQIRAQLEETTSEFDREKLQERLAKLAGGVAVIKVGAATET 385          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_CHLPB (60 kDa chaperonin OS=Chlorobium phaeobacteroides (strain BS1) GN=groL PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 126/224 (56.25%), Postives = 161/224 (71.88%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EE K  +  L VVEGMQFDRGY+SPYFVT+SEKM  E E+  +L+ DKKI+N +DL+ +LE   +   P++II+EDIE EALATLVVNKLRG LK+ A+KAPGFG+R+   L+DIAILTGGTVI +E G  L+      LG A+ V + KD TTIV      D +  R+ +I+  I+ +  DY+ EKL ER+AKLSGGVAVI +GA TE
Sbjct:  163 ADAMEKVGKDGVITVEEAKGMDTELKVVEGMQFDRGYLSPYFVTNSEKMDAELEDPYILIHDKKISNMKDLLPILEKTAQSGRPLMIISEDIEGEALATLVVNKLRGTLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEEKGYKLENATISYLGQAATVTVDKDNTTIVEGKGQADDIKARINEIKNQIDASTSDYDTEKLQERLAKLSGGVAVINIGASTE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_BURVI (60 kDa chaperonin OS=Burkholderia vietnamiensis GN=groL PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 125/224 (55.80%), Postives = 161/224 (71.88%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+GKS  + L VVEGMQFDRGY+SPYF+ + +K     +N  +LL DKK++N RDL+ VLE   +   P+LIIAED+E EALATLVVN +RG LK  A+KAPGFG+R+   L+DIAILTGG VI +E GL L+K     LG A ++ + K+ TTI+       ++  RV Q+RT IE A  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYFINNPDKQVAVLDNPFVLLHDKKVSNIRDLLPVLEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVIAEETGLTLEKATLAELGQAKRIEVGKENTTIIDGAGEAASIEARVKQVRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_BURTH (60 kDa chaperonin OS=Burkholderia thailandensis GN=groL PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 127/224 (56.70%), Postives = 160/224 (71.43%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+GKS  + L VVEGMQFDRGY+SPYF+ + +K     EN  +LL DKK++N RDL+ VLE   +   P+LIIAED+E EALATLVVN +RG LK  A+KAPGFG+R+   L+DIAILTGG VI +E GL L+K     LG A ++ + K+ TTI+        +  RV QIRT IE A  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYFINNPDKQVAVLENPFVLLHDKKVSNIRDLLPVLEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVIAEETGLTLEKATLAELGQAKRIEVGKENTTIIDGAGEAVNIEARVKQIRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
The following BLAST results are available for this feature:
BLAST of FC920519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_STRSV2.783e-6454.7160 kDa chaperonin OS=Streptococcus sanguinis (stra... [more]
CH60_STRSA2.783e-6454.7160 kDa chaperonin OS=Streptococcus sanguis GN=groL... [more]
CH60_STRAP2.783e-6454.7160 kDa chaperonin OS=Streptococcus anginosus GN=gr... [more]
CH60_RHOMR2.783e-6455.3660 kDa chaperonin OS=Rhodothermus marinus GN=groL ... [more]
CH60_RHOCA2.783e-6454.9160 kDa chaperonin OS=Rhodobacter capsulatus GN=gro... [more]
CH60_PHATR2.783e-6453.5460 kDa chaperonin, chloroplastic OS=Phaeodactylum ... [more]
CH60_GEOTN2.783e-6456.0060 kDa chaperonin OS=Geobacillus thermodenitrifica... [more]
CH60_CHLPB2.783e-6456.2560 kDa chaperonin OS=Chlorobium phaeobacteroides (... [more]
CH60_BURVI2.783e-6455.8060 kDa chaperonin OS=Burkholderia vietnamiensis GN... [more]
CH60_BURTH2.783e-6456.7060 kDa chaperonin OS=Burkholderia thailandensis GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32009E02EF RVDevelop1 Citrus clementina cDNA clone C32009E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920519 ID=FC920519; Name=FC920519; organism=Citrus clementina; type=EST; length=679bp
CTCTGCCGGGGCCATGAGTAAAGTGGGACGTACGGGTGTGGTGACCCTTG
AAGAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAA
TTTGATCGTGGTTATATTTCTCCCTACTTCGTCACTGATAGTGAGAAAAT
GGCAGTTGAATATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTA
CCAATGCAAGGGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCA
TACCCAATTTTGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAAC
TCTTGTCGTGAACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAG
CTCCTGGTTTTGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATT
TTGACTGGAGGAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAA
AGTTGGCAAGGAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGG
ATACCACCACCATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAA
CGAGTGGCGCAAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGA
AAGGGAGAAGCTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTG
TCATACAGGTTGGAGCTCAAACTGAGACA
back to top