FC920519

Overview
NameFC920519
Unique NameFC920519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_BURPP (60 kDa chaperonin OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=groL PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 125/224 (55.80%), Postives = 161/224 (71.88%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+GKS ++ L VVEGMQFDRGY+SPYF+ + +K     +N  +LL DKK++N RDL+ VLE   +   P+LIIAED+E EALATLVVN +RG LK  A+KAPGFG+R+   L+DIAILTGG VI +E GL L+K     LG A ++ + K+ TTI+        +  RV Q+RT IE A  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMDKVGKEGVITVEDGKSLQDELDVVEGMQFDRGYLSPYFINNPDKQVAVLDNPFVLLHDKKVSNIRDLLPVLEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVIAEETGLTLEKATLAELGQAKRIEVGKENTTIIDGAGEAANIEARVKQVRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_BURMS (60 kDa chaperonin OS=Burkholderia mallei (strain SAVP1) GN=groL PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 127/224 (56.70%), Postives = 160/224 (71.43%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+GKS  + L VVEGMQFDRGY+SPYF+ + +K     EN  +LL DKK++N RDL+ VLE   +   P+LIIAED+E EALATLVVN +RG LK  A+KAPGFG+R+   L+DIAILTGG VI +E GL L+K     LG A ++ + K+ TTI+        +  RV QIRT IE A  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYFINNPDKQVAVLENPFVLLHDKKVSNIRDLLPVLEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVIAEETGLTLEKATLAELGQAKRIEVGKENTTIIDGAGEAVNIEARVKQIRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_BURMA (60 kDa chaperonin OS=Burkholderia mallei GN=groL PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 127/224 (56.70%), Postives = 160/224 (71.43%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+GKS  + L VVEGMQFDRGY+SPYF+ + +K     EN  +LL DKK++N RDL+ VLE   +   P+LIIAED+E EALATLVVN +RG LK  A+KAPGFG+R+   L+DIAILTGG VI +E GL L+K     LG A ++ + K+ TTI+        +  RV QIRT IE A  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYFINNPDKQVAVLENPFVLLHDKKVSNIRDLLPVLEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVIAEETGLTLEKATLAELGQAKRIEVGKENTTIIDGAGEAVNIEARVKQIRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_BURM9 (60 kDa chaperonin OS=Burkholderia mallei (strain NCTC 10229) GN=groL PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 127/224 (56.70%), Postives = 160/224 (71.43%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+GKS  + L VVEGMQFDRGY+SPYF+ + +K     EN  +LL DKK++N RDL+ VLE   +   P+LIIAED+E EALATLVVN +RG LK  A+KAPGFG+R+   L+DIAILTGG VI +E GL L+K     LG A ++ + K+ TTI+        +  RV QIRT IE A  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYFINNPDKQVAVLENPFVLLHDKKVSNIRDLLPVLEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVIAEETGLTLEKATLAELGQAKRIEVGKENTTIIDGAGEAVNIEARVKQIRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_BURM7 (60 kDa chaperonin OS=Burkholderia mallei (strain NCTC 10247) GN=groL PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 127/224 (56.70%), Postives = 160/224 (71.43%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+GKS  + L VVEGMQFDRGY+SPYF+ + +K     EN  +LL DKK++N RDL+ VLE   +   P+LIIAED+E EALATLVVN +RG LK  A+KAPGFG+R+   L+DIAILTGG VI +E GL L+K     LG A ++ + K+ TTI+        +  RV QIRT IE A  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYFINNPDKQVAVLENPFVLLHDKKVSNIRDLLPVLEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVIAEETGLTLEKATLAELGQAKRIEVGKENTTIIDGAGEAVNIEARVKQIRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_BACSU (60 kDa chaperonin OS=Bacillus subtilis GN=groL PE=1 SV=3)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 126/225 (56.00%), Postives = 160/225 (71.11%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            A AM +VG  GV+T+EE K     L VVEGMQFDRGY SPY VTDS+KM    +N  +L+ DKKITN ++++ VLE  ++   P+L+IAED+E EALATLVVNKLRG     A+KAPGFG+R+   L+DIA+LTGG VI +++GL L       LG ASKVV+TK+ TTIV      D +S RV QIR  +E    +++REKL ER+AKL+GGVAVI+VGA TET
Sbjct:  161 AEAMERVGNDGVITIEESKGFTTELEVVEGMQFDRGYASPYMVTDSDKMEAVLDNPYILITDKKITNIQEILPVLEQVVQQGKPLLLIAEDVEGEALATLVVNKLRGTFNAVAVKAPGFGDRRKAMLEDIAVLTGGEVITEDLGLDLKSTQIAQLGRASKVVVTKENTTIVEGAGETDKISARVTQIRAQVEETTSEFDREKLQERLAKLAGGVAVIKVGAATET 385          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_AZOSE (60 kDa chaperonin OS=Azoarcus sp. (strain EbN1) GN=groL PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 124/224 (55.36%), Postives = 161/224 (71.88%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A +M KVG+ GV+T+E+GKS +N L VVEGMQFDRGY+SPYF+ + +K     EN  +LL DKKI+N RDL+ VLE   +   P+LI+AED+E EALATLVVN +RG LK  ++KAPGFG+R+   L+DIA+LTGG VI +EVGL L+K     LG A+++ + K+ T I+        +  RV QIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AKSMDKVGKEGVITVEDGKSLQNELDVVEGMQFDRGYLSPYFINNPDKQVAILENPFILLFDKKISNIRDLLPVLEQVAKAGRPLLIVAEDVEGEALATLVVNNIRGILKTCSVKAPGFGDRRKAMLEDIAVLTGGQVIAEEVGLTLEKATLAELGQAARIEIGKENTIIIDGAGEGSRIEGRVKQIRAQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_AERSA (60 kDa chaperonin OS=Aeromonas salmonicida GN=groL PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 124/224 (55.36%), Postives = 164/224 (73.21%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVGR GV+T+E+G+  ++ L VVEGMQFDRGY+SPYFV   E  AVE ++  +LLVDKK++N R+++ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA+LT G  + +EVG+ L+K   E LG A ++V+TK+ TTI+        +  RVAQIR  IE    DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMDKVGRDGVITVEDGQGLDDELAVVEGMQFDRGYLSPYFVNKPETGAVELDDPFILLVDKKVSNIREMLPVLEGVAKAGKPLLIVAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIAMLTSGGTVIEEVGMELEKATLEDLGRAKRIVITKENTTIIDGVGDAALIESRVAQIRQQIEETSSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH603_NITHX (60 kDa chaperonin 3 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=groL3 PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 122/224 (54.46%), Postives = 165/224 (73.66%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG  GV+T+EE KS E  + +VEGM+FDRGY+SPYFVT++EKM  E +   +LL +KK++  + ++ +LE  ++   P+LI+AEDIE EALATLVVN+LRG LK+AA+KAPGFG+R+   L+DIAILTGG +I D++G+ L+ V  ++LG A KVV+ K+ TTIV     +  +  RV QI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 AQAMQKVGNEGVITVEENKSLETDVDIVEGMRFDRGYLSPYFVTNAEKMTAELDGAYILLHEKKLSGLQAILPLLEAVVKSGKPLLIVAEDIEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISDDLGIKLENVTVDMLGRAKKVVIDKENTTIVNGAGKKKDIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH602_SPHAL (60 kDa chaperonin 2 OS=Sphingopyxis alaskensis GN=groL2 PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 122/224 (54.46%), Postives = 166/224 (74.11%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG  GV+T+EE KS    L  VEGMQFDRGY+SPYF+T++EK+ VE ++  +L+ +KK++N + ++ +LE  ++   P+LIIAED+E EALATLVVN+LRG LK+AA+KAPGFG+R+   L+DIAILTGG V+ +++G+ L+ V   +LG A KVV+ KD TTIV     +  +  R+AQIR  I+    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 AEAMDKVGNEGVITVEEAKSLATELETVEGMQFDRGYLSPYFITNAEKLKVELDDPYILIHEKKLSNLQAMLPLLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGNVVSEDLGIKLENVTVNMLGRAKKVVIDKDNTTIVDGVGARTDIDARIAQIRQQIDTTTSDYDREKLQERLAKLAGGVAVIRVGGATE 386          
The following BLAST results are available for this feature:
BLAST of FC920519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BURPP2.783e-6455.8060 kDa chaperonin OS=Burkholderia phytofirmans (st... [more]
CH60_BURMS2.783e-6456.7060 kDa chaperonin OS=Burkholderia mallei (strain S... [more]
CH60_BURMA2.783e-6456.7060 kDa chaperonin OS=Burkholderia mallei GN=groL P... [more]
CH60_BURM92.783e-6456.7060 kDa chaperonin OS=Burkholderia mallei (strain N... [more]
CH60_BURM72.783e-6456.7060 kDa chaperonin OS=Burkholderia mallei (strain N... [more]
CH60_BACSU2.783e-6456.0060 kDa chaperonin OS=Bacillus subtilis GN=groL PE=... [more]
CH60_AZOSE2.783e-6455.3660 kDa chaperonin OS=Azoarcus sp. (strain EbN1) GN... [more]
CH60_AERSA2.783e-6455.3660 kDa chaperonin OS=Aeromonas salmonicida GN=groL... [more]
CH603_NITHX2.783e-6454.4660 kDa chaperonin 3 OS=Nitrobacter hamburgensis (s... [more]
CH602_SPHAL2.783e-6454.4660 kDa chaperonin 2 OS=Sphingopyxis alaskensis GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32009E02EF RVDevelop1 Citrus clementina cDNA clone C32009E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920519 ID=FC920519; Name=FC920519; organism=Citrus clementina; type=EST; length=679bp
CTCTGCCGGGGCCATGAGTAAAGTGGGACGTACGGGTGTGGTGACCCTTG
AAGAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAA
TTTGATCGTGGTTATATTTCTCCCTACTTCGTCACTGATAGTGAGAAAAT
GGCAGTTGAATATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTA
CCAATGCAAGGGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCA
TACCCAATTTTGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAAC
TCTTGTCGTGAACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAG
CTCCTGGTTTTGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATT
TTGACTGGAGGAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAA
AGTTGGCAAGGAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGG
ATACCACCACCATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAA
CGAGTGGCGCAAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGA
AAGGGAGAAGCTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTG
TCATACAGGTTGGAGCTCAAACTGAGACA
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