FC920519

Overview
NameFC920519
Unique NameFC920519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:789..1467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH602_RHOPS (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris (strain BisB5) GN=groL2 PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 122/224 (54.46%), Postives = 167/224 (74.55%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG  GV+T+EE KS +  + +VEGM+FDRGY+SPYFVT++EKM VE ++  +LL +KK++  + ++ VLE  ++   P+LIIAED+E EALATLVVN+LRG LK++A+KAPGFG+R+   L+DIAILTGG +I +E+G+ L+ V  ++LG A KVV+ K+ TTIV     +  +  RV QI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 AQAMQKVGNEGVITVEENKSLDTEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDVYILLHEKKVSGLQSMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVSAVKAPGFGDRRKAMLEDIAILTGGQLISEELGVKLESVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVQQIKAQIEETSSDYDREKLQERLAKLAGGVAVIRVGGATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH602_BRAJA (60 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN=groL2 PE=2 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 123/222 (55.41%), Postives = 164/222 (73.87%), Query Frame = 2
Query:   11 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            AM KVG  GV+T+EE KS E  L VVEGMQFDRGYISPYFVT+++KM VE ++  +L+ +KK++   +L+ +LE  ++   P++IIAED+E EALATLVVN+LRG LK+AA+KAPGFG+R+   L DIAILTGG  I +++G+ L+ V   +LG A KV++ K+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  165 AMKKVGNEGVITVEEAKSLETELEVVEGMQFDRGYISPYFVTNADKMRVEMDDAYVLINEKKLSQLNELLPLLEAVVQSGKPLVIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLNMLGRAKKVMIDKENTTIVSGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH601_BURVG (60 kDa chaperonin 1 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=groL1 PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 125/224 (55.80%), Postives = 161/224 (71.88%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+GKS  + L VVEGMQFDRGY+SPYF+ + +K     +N  +LL DKK++N RDL+ VLE   +   P+LIIAED+E EALATLVVN +RG LK  A+KAPGFG+R+   L+DIAILTGG VI +E GL L+K     LG A ++ + K+ TTI+       ++  RV Q+RT IE A  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYFINNPDKQVAVLDNPFVLLHDKKVSNIRDLLPVLEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVIAEETGLTLEKATLAELGQAKRIEVGKENTTIIDGAGEAASIEARVKQVRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH601_BURTA (60 kDa chaperonin 1 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=groL1 PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 127/224 (56.70%), Postives = 160/224 (71.43%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+GKS  + L VVEGMQFDRGY+SPYF+ + +K     EN  +LL DKK++N RDL+ VLE   +   P+LIIAED+E EALATLVVN +RG LK  A+KAPGFG+R+   L+DIAILTGG VI +E GL L+K     LG A ++ + K+ TTI+        +  RV QIRT IE A  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYFINNPDKQVAVLENPFVLLHDKKVSNIRDLLPVLEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVIAEETGLTLEKATLAELGQAKRIEVGKENTTIIDGAGEAVNIEARVKQIRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH601_BURPS (60 kDa chaperonin 1 OS=Burkholderia pseudomallei GN=groL1 PE=3 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 127/224 (56.70%), Postives = 160/224 (71.43%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+GKS  + L VVEGMQFDRGY+SPYF+ + +K     EN  +LL DKK++N RDL+ VLE   +   P+LIIAED+E EALATLVVN +RG LK  A+KAPGFG+R+   L+DIAILTGG VI +E GL L+K     LG A ++ + K+ TTI+        +  RV QIRT IE A  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYFINNPDKQVAVLENPFVLLHDKKVSNIRDLLPVLEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVIAEETGLTLEKATLAELGQAKRIEVGKENTTIIDGAGEAVNIEARVKQIRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH601_BURP6 (60 kDa chaperonin 1 OS=Burkholderia pseudomallei (strain 668) GN=groL1 PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 127/224 (56.70%), Postives = 160/224 (71.43%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+GKS  + L VVEGMQFDRGY+SPYF+ + +K     EN  +LL DKK++N RDL+ VLE   +   P+LIIAED+E EALATLVVN +RG LK  A+KAPGFG+R+   L+DIAILTGG VI +E GL L+K     LG A ++ + K+ TTI+        +  RV QIRT IE A  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYFINNPDKQVAVLENPFVLLHDKKVSNIRDLLPVLEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVIAEETGLTLEKATLAELGQAKRIEVGKENTTIIDGAGEAVNIEARVKQIRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH601_BURP1 (60 kDa chaperonin 1 OS=Burkholderia pseudomallei (strain 1710b) GN=groL1 PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 127/224 (56.70%), Postives = 160/224 (71.43%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+GKS  + L VVEGMQFDRGY+SPYF+ + +K     EN  +LL DKK++N RDL+ VLE   +   P+LIIAED+E EALATLVVN +RG LK  A+KAPGFG+R+   L+DIAILTGG VI +E GL L+K     LG A ++ + K+ TTI+        +  RV QIRT IE A  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYFINNPDKQVAVLENPFVLLHDKKVSNIRDLLPVLEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVIAEETGLTLEKATLAELGQAKRIEVGKENTTIIDGAGEAVNIEARVKQIRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH601_BURP0 (60 kDa chaperonin 1 OS=Burkholderia pseudomallei (strain 1106a) GN=groL1 PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 127/224 (56.70%), Postives = 160/224 (71.43%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+GKS  + L VVEGMQFDRGY+SPYF+ + +K     EN  +LL DKK++N RDL+ VLE   +   P+LIIAED+E EALATLVVN +RG LK  A+KAPGFG+R+   L+DIAILTGG VI +E GL L+K     LG A ++ + K+ TTI+        +  RV QIRT IE A  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYFINNPDKQVAVLENPFVLLHDKKVSNIRDLLPVLEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAILTGGQVIAEETGLTLEKATLAELGQAKRIEVGKENTTIIDGAGEAVNIEARVKQIRTQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_POLNS (60 kDa chaperonin OS=Polynucleobacter necessarius (strain STIR1) GN=groL PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.635e-64
Identity = 125/224 (55.80%), Postives = 159/224 (70.98%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+GKS E+ L VVEGMQFDRGY+SPYF+   EK     E+  +LL DKKI N RDL+ VLE   +   P+LIIAED+E EALATLVVN +RG +K  A+KAPGFG+R+   L+DIAILTGG VI +E+GL L+K   E LG A ++ + K+ T I+       A+  RV  IR  +E A  DY++EKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMEKVGKEGVITVEDGKSLEDELEVVEGMQFDRGYLSPYFINQPEKQVAVLESPYVLLFDKKIANIRDLLPVLEQVAKSGRPLLIIAEDVEGEALATLVVNNIRGIIKTCAVKAPGFGDRRKAMLEDIAILTGGIVIAEEIGLTLEKTTLEHLGQAKRLEVGKENTIIIDGAGDAKAIEARVKNIRVQVEEATSDYDKEKLQERVAKLAGGVAVIRVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_METI4 (60 kDa chaperonin OS=Methylacidiphilum infernorum (isolate V4) GN=groL PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.635e-64
Identity = 122/225 (54.22%), Postives = 164/225 (72.89%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            A A+ KVG+ G VT+EE K  E  L VVEGMQFDRGYISPYFVT++E++    EN  +L+ +KKI+N +DL+ +LE   +   P+LIIAED+E EALATLVVNKLRG L++ A+KAPGFG+R+   L+DIAILTGG  + +++G+ L+ V  E LG A ++++ K+ TTI+    ++  +  R+ QIR  IE    DY+REKL ER+AKL+GGVAVI VGA TET
Sbjct:  163 ADALDKVGKDGTVTVEEAKHIETTLEVVEGMQFDRGYISPYFVTNAEELEAVLENAYILIHEKKISNLKDLLPLLEKIAKAGRPLLIIAEDVEGEALATLVVNKLRGTLQVCAVKAPGFGDRRKAMLEDIAILTGGRCLTEDLGIKLENVQLEDLGRAKRIIVEKENTTIIEGSGSRSEIQGRINQIRRQIEETTSDYDREKLQERLAKLAGGVAVIHVGAATET 387          
The following BLAST results are available for this feature:
BLAST of FC920519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_RHOPS2.783e-6454.4660 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH602_BRAJA2.783e-6455.4160 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN... [more]
CH601_BURVG2.783e-6455.8060 kDa chaperonin 1 OS=Burkholderia vietnamiensis ... [more]
CH601_BURTA2.783e-6456.7060 kDa chaperonin 1 OS=Burkholderia thailandensis ... [more]
CH601_BURPS2.783e-6456.7060 kDa chaperonin 1 OS=Burkholderia pseudomallei G... [more]
CH601_BURP62.783e-6456.7060 kDa chaperonin 1 OS=Burkholderia pseudomallei (... [more]
CH601_BURP12.783e-6456.7060 kDa chaperonin 1 OS=Burkholderia pseudomallei (... [more]
CH601_BURP02.783e-6456.7060 kDa chaperonin 1 OS=Burkholderia pseudomallei (... [more]
CH60_POLNS3.635e-6455.8060 kDa chaperonin OS=Polynucleobacter necessarius ... [more]
CH60_METI43.635e-6454.2260 kDa chaperonin OS=Methylacidiphilum infernorum ... [more]

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Properties
Property NameValue
Genbank descriptionC32009E02EF RVDevelop1 Citrus clementina cDNA clone C32009E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920519 ID=FC920519; Name=FC920519; organism=Citrus clementina; type=EST; length=679bp
CTCTGCCGGGGCCATGAGTAAAGTGGGACGTACGGGTGTGGTGACCCTTG
AAGAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAA
TTTGATCGTGGTTATATTTCTCCCTACTTCGTCACTGATAGTGAGAAAAT
GGCAGTTGAATATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTA
CCAATGCAAGGGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCA
TACCCAATTTTGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAAC
TCTTGTCGTGAACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAG
CTCCTGGTTTTGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATT
TTGACTGGAGGAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAA
AGTTGGCAAGGAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGG
ATACCACCACCATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAA
CGAGTGGCGCAAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGA
AAGGGAGAAGCTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTG
TCATACAGGTTGGAGCTCAAACTGAGACA
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