FC920519

Overview
NameFC920519
Unique NameFC920519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:789..1467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_RALEH (60 kDa chaperonin OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=groL PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.577e-67
Identity = 130/224 (58.04%), Postives = 165/224 (73.66%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+E+GKS  + L VVEGMQFDRGY+SPYF+ + EK  V+ +N  +LL DKKI+N RDL+ VLE   +   P+LI+AED+E EALATLVVN +RG LK AA+KAPGFG+R+   L+DIAILTGGTVI +E+GL L+K G   LG A ++ + K+ T I+       A+  RV QIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMDKVGKEGVITVEDGKSLADELEVVEGMQFDRGYLSPYFINNPEKQVVQLDNPFVLLFDKKISNIRDLLPVLEQVAKAGRPLLIVAEDVEGEALATLVVNNIRGILKTAAVKAPGFGDRRKAMLEDIAILTGGTVIAEEIGLTLEKAGLNDLGQAKRIEIGKENTIIIDGAGDAAAIEGRVKQIRAQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_PSEPK (60 kDa chaperonin OS=Pseudomonas putida (strain KT2440) GN=groL PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.577e-67
Identity = 130/224 (58.04%), Postives = 163/224 (72.77%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG   EN L VVEGMQFDRGY+SPYFV   + M  E E   LLLVDKKI+N R+L+ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA+LTGG VI +E+GL+L+    E LGNA +V+L+K+ TTI+        +  RV QIR  IE    DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMEKVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFVNKPDTMVAELEGPLLLLVDKKISNIRELLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAVLTGGQVISEEIGLSLETATLEHLGNAKRVILSKENTTIIDGAGADTEIEARVKQIRAQIEETSSDYDREKLQERLAKLAGGVAVIKVGAGTE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_PSEPG (60 kDa chaperonin OS=Pseudomonas putida (strain GB-1) GN=groL PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.577e-67
Identity = 130/224 (58.04%), Postives = 163/224 (72.77%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG   EN L VVEGMQFDRGY+SPYFV   + M  E E   LLLVDKKI+N R+L+ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA+LTGG VI +E+GL+L+    E LGNA +V+L+K+ TTI+        +  RV QIR  IE    DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMEKVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFVNKPDTMVAELEGPLLLLVDKKISNIRELLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAVLTGGQVISEEIGLSLETATLEHLGNAKRVILSKENTTIIDGAGADTEIEARVKQIRAQIEETSSDYDREKLQERLAKLAGGVAVIKVGAGTE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_PSEP1 (60 kDa chaperonin OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=groL PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.577e-67
Identity = 130/224 (58.04%), Postives = 163/224 (72.77%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG   EN L VVEGMQFDRGY+SPYFV   + M  E E   LLLVDKKI+N R+L+ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA+LTGG VI +E+GL+L+    E LGNA +V+L+K+ TTI+        +  RV QIR  IE    DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMEKVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFVNKPDTMVAELEGPLLLLVDKKISNIRELLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAVLTGGQVISEEIGLSLETATLEHLGNAKRVILSKENTTIIDGAGADTEIEARVKQIRAQIEETSSDYDREKLQERLAKLAGGVAVIKVGAGTE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH604_RHIME (60 kDa chaperonin 4 OS=Rhizobium meliloti GN=groL4 PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.577e-67
Identity = 131/224 (58.48%), Postives = 169/224 (75.45%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG  GV+T+EE K+AE  L VVEGMQFDRGY+SPYFVT+ EKM  + E+  +LL +KK++N + ++ VLE  ++   P+LIIAED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L+DIAILTGGTVI +++G+ L+ V  ++LG A KV +TK+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 AEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAFILLHEKKLSNLQAMLPVLEAVVQTGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLESVTLDMLGRAKKVSITKENTTIVDGAGQKSDIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH603_RHIL3 (60 kDa chaperonin 3 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=groL3 PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.577e-67
Identity = 129/224 (57.59%), Postives = 171/224 (76.34%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM +VG  GV+T+EE K+AE  L VVEGMQFDRGY+SPYFVT+++KM VE+E+  +L+ +KK++N + ++ VLE  ++ + P+LIIAED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L+DIAILT GTVI +++G+ L+ V  ++LG A KV + K+ TTIV     +  +  RVAQIR  IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 AEAMERVGNDGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNADKMRVEFEDPYILIHEKKLSNLQSMLPVLEAVVQSSKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTAGTVISEDLGIKLESVTLDMLGRAKKVSIEKENTTIVDGSGAKSDIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH602_THEVL (60 kDa chaperonin 2 OS=Thermosynechococcus vulcanus GN=groL2 PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.577e-67
Identity = 131/223 (58.74%), Postives = 164/223 (73.54%), Query Frame = 2
Query:   11 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            AM+KVG+ GV+T+EE KS +  + +VEGMQFDRGYISPYFVTD E+M V+  N  LLL DKKIT+ +DLI  LE   R   P++IIAED+E EALATLVVNKLRG L + A+KAP FGER+   L DIAILTGG VI +EVGL L+ V   +LG AS V +TKDTT +V +   +  + KRV Q++  +   + +Y++EKL ERIAKL GGVAVI+VGA TET
Sbjct:  163 AMAKVGKDGVITIEESKSLQTEMEIVEGMQFDRGYISPYFVTDPERMIVQLNNAYLLLTDKKITSIQDLIPTLERVARSGRPLVIIAEDVEGEALATLVVNKLRGVLNVVAVKAPAFGERRKAMLQDIAILTGGQVISEEVGLTLEDVELTMLGEASSVTVTKDTTILVSEKGNKADIQKRVEQLKQQLAETDSEYDKEKLQERIAKLVGGVAVIKVGAATET 385          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH602_THEEB (60 kDa chaperonin 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.577e-67
Identity = 131/223 (58.74%), Postives = 164/223 (73.54%), Query Frame = 2
Query:   11 AMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            AM+KVG+ GV+T+EE KS +  + +VEGMQFDRGYISPYFVTD E+M V+  N  LLL DKKIT+ +DLI  LE   R   P++IIAED+E EALATLVVNKLRG L + A+KAP FGER+   L DIAILTGG VI +EVGL L+ V   +LG AS V +TKDTT +V +   +  + KRV Q++  +   + +Y++EKL ERIAKL GGVAVI+VGA TET
Sbjct:  163 AMAKVGKDGVITIEESKSLQTEMEIVEGMQFDRGYISPYFVTDPERMIVQLNNAYLLLTDKKITSIQDLIPTLERVARSGRPLVIIAEDVEGEALATLVVNKLRGVLNVVAVKAPAFGERRKAMLQDIAILTGGQVISEEVGLTLEDVELTMLGEASSVTVTKDTTILVSEKGNKADIQKRVEQLKQQLAETDSEYDKEKLQERIAKLVGGVAVIKVGAATET 385          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH601_RHIME (60 kDa chaperonin 1 OS=Rhizobium meliloti GN=groL1 PE=2 SV=2)

HSP 1 Score: 255.758 bits (652), Expect = 1.577e-67
Identity = 131/224 (58.48%), Postives = 169/224 (75.45%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG  GV+T+EE K+AE  L VVEGMQFDRGY+SPYFVT+ EKM  + E+  +LL +KK++N + ++ VLE  ++   P+LIIAED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L+DIAILTGGTVI +++G+ L+ V  ++LG A KV +TK+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 AEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAFILLHEKKLSNLQAMLPVLEAVVQTGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLESVTLDMLGRAKKVSITKENTTIVDGAGQKSDIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_SILST (60 kDa chaperonin OS=Silicibacter sp. (strain TM1040) GN=groL PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.059e-67
Identity = 129/224 (57.59%), Postives = 166/224 (74.11%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG  GV+T+EE K  E    VVEGMQFDRGY+SPYFVT+++KM  E E+C +LL +KK+++ + ++ +LE  I+   P+LIIAED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L DIAILTGG VI +++G+ L+ V  ++LG A K+ +TKD TTIV     +  +  RVAQIR  IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 ADAMQKVGNDGVITVEENKGLETETDVVEGMQFDRGYLSPYFVTNADKMTAELEDCLILLHEKKLSSLQPMVPLLEQVIQSQKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLESVTMDMLGTAKKIQITKDETTIVDGAGEKAEIEARVAQIRAQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTE 386          
The following BLAST results are available for this feature:
BLAST of FC920519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_RALEH1.577e-6758.0460 kDa chaperonin OS=Ralstonia eutropha (strain AT... [more]
CH60_PSEPK1.577e-6758.0460 kDa chaperonin OS=Pseudomonas putida (strain KT... [more]
CH60_PSEPG1.577e-6758.0460 kDa chaperonin OS=Pseudomonas putida (strain GB... [more]
CH60_PSEP11.577e-6758.0460 kDa chaperonin OS=Pseudomonas putida (strain F1... [more]
CH604_RHIME1.577e-6758.4860 kDa chaperonin 4 OS=Rhizobium meliloti GN=groL4... [more]
CH603_RHIL31.577e-6757.5960 kDa chaperonin 3 OS=Rhizobium leguminosarum bv.... [more]
CH602_THEVL1.577e-6758.7460 kDa chaperonin 2 OS=Thermosynechococcus vulcanu... [more]
CH602_THEEB1.577e-6758.7460 kDa chaperonin 2 OS=Thermosynechococcus elongat... [more]
CH601_RHIME1.577e-6758.4860 kDa chaperonin 1 OS=Rhizobium meliloti GN=groL1... [more]
CH60_SILST2.059e-6757.5960 kDa chaperonin OS=Silicibacter sp. (strain TM10... [more]

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Properties
Property NameValue
Genbank descriptionC32009E02EF RVDevelop1 Citrus clementina cDNA clone C32009E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920519 ID=FC920519; Name=FC920519; organism=Citrus clementina; type=EST; length=679bp
CTCTGCCGGGGCCATGAGTAAAGTGGGACGTACGGGTGTGGTGACCCTTG
AAGAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAA
TTTGATCGTGGTTATATTTCTCCCTACTTCGTCACTGATAGTGAGAAAAT
GGCAGTTGAATATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTA
CCAATGCAAGGGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCA
TACCCAATTTTGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAAC
TCTTGTCGTGAACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAG
CTCCTGGTTTTGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATT
TTGACTGGAGGAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAA
AGTTGGCAAGGAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGG
ATACCACCACCATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAA
CGAGTGGCGCAAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGA
AAGGGAGAAGCTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTG
TCATACAGGTTGGAGCTCAAACTGAGACA
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