FC920519

Overview
NameFC920519
Unique NameFC920519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:789..1467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_PSEPW (60 kDa chaperonin OS=Pseudomonas putida (strain W619) GN=groL PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.059e-67
Identity = 134/225 (59.56%), Postives = 168/225 (74.67%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDA-VSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG   EN L VVEGMQFDRGY+SPYFV   + M  E E+  LLLVDKKI+N R+L+ VLE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA+LTGG VI +E+GL L+    E LGNA +V+L+K+ TTI+ DG+  DA +  RV QIR  IE    DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMEKVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFVNKPDTMVAELESPLLLLVDKKISNIRELLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAVLTGGQVISEEIGLTLETTTLEHLGNAKRVILSKENTTII-DGAGVDADIEARVKQIRAQIEETSSDYDREKLQERLAKLAGGVAVIKVGAGTE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_PHOLL (60 kDa chaperonin OS=Photorhabdus luminescens subsp. laumondii GN=groL PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.059e-67
Identity = 129/224 (57.59%), Postives = 168/224 (75.00%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EEG   E+ L VVEGMQFDRGY+SPYF+   E  +VE EN  +LLVDKKI+N R+L+ VLE   + + P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA+LT G VI +E+GL L+K   E LG A ++V+ KDTTTI+     +DA+  RV+QI   I+ +  DY+REKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMDKVGKEGVITVEEGTGLEDELDVVEGMQFDRGYLSPYFINKPENGSVELENPYILLVDKKISNIRELLPVLEGVAKASKPLLIVAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLHDIAVLTNGNVISEEIGLELEKATLEDLGQAKRIVINKDTTTIIDGVGEEDAIKGRVSQINQQIKESTSDYDREKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_HELPS (60 kDa chaperonin OS=Helicobacter pylori (strain Shi470) GN=groL PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.059e-67
Identity = 133/225 (59.11%), Postives = 171/225 (76.00%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIV-GDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EE K  E+ L VVEGMQFDRGY+SPYFVT++EKM  + +N  +LL DKKI++ +D++ +LE  ++   P+LIIAEDIE EAL TLVVNKLRG L IAA+KAPGFG+R+ + L DIA+LTGG VI +E+GL L+    E LG A ++V+ KD TTIV G G + D V  RVAQI+T I +   DY++EKL ER+AKLSGGVAVI+VGA +E
Sbjct:  162 ADAMEKVGKDGVITVEEAKGIEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMKEGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAVLTGGQVISEELGLTLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSHD-VKDRVAQIKTQIASTTSDYDKEKLQERLAKLSGGVAVIKVGAASE 385          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_HELAH (60 kDa chaperonin OS=Helicobacter acinonychis (strain Sheeba) GN=groL PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.059e-67
Identity = 133/225 (59.11%), Postives = 171/225 (76.00%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIV-GDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG+ GV+T+EE K  E+ L VVEGMQFDRGY+SPYFVT++EKM  + +N  +LL DKKI++ +D++ +LE  ++   P+LIIAEDIE EAL TLVVNKLRG L IAA+KAPGFG+R+ + L DIA+LTGG VI +E+GL L+    E LG A ++V+ KD TTIV G G + D V  RVAQI+T I +   DY++EKL ER+AKLSGGVAVI+VGA +E
Sbjct:  162 ADAMEKVGKDGVITVEEAKGIEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTMKEGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAVLTGGQVISEELGLTLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSHD-VKDRVAQIKTQIASTTSDYDKEKLQERLAKLSGGVAVIKVGAASE 385          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_GEOSL (60 kDa chaperonin OS=Geobacter sulfurreducens GN=groL PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.059e-67
Identity = 134/226 (59.29%), Postives = 164/226 (72.57%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIV-GDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTET 679
            A AM KVG+ GV+T+EE K+ E  L  VEGMQFDRGY+SPYFVTD E+M    EN  +L+ DKKI+N +DL+ VLE   +   P+LIIAEDIE EALATLVVNKLRG L I A+KAPGFG+R+   L+DIAILTGG VI +E+G  L+    ++LG A ++ + KD TTI+ GDG   D +  RV QIR  IE    DY+REKL ER+AKL GGVAVI+VGA TET
Sbjct:  163 AQAMEKVGKEGVITVEEAKAMETSLETVEGMQFDRGYLSPYFVTDPERMEASLENAMILIHDKKISNMKDLLPVLEQTAKSGRPLLIIAEDIEGEALATLVVNKLRGVLNICAVKAPGFGDRRKAMLEDIAILTGGQVISEEIGNKLENTTMDMLGRAKRITVDKDNTTIIDGDGKEAD-IQGRVKQIRAQIEETTSDYDREKLQERLAKLVGGVAVIKVGAATET 387          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH602_RHILE (60 kDa chaperonin 2 OS=Rhizobium leguminosarum GN=groL2 PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.059e-67
Identity = 129/224 (57.59%), Postives = 171/224 (76.34%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG  GV+T+EE K+AE  L VVEGMQFDRGY+SPYFVT+++KM VE+E+  +L+ +KK++N + ++ VLE  ++ + P+LIIAED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L+DIAILT GTVI +++G+ L+ V  ++LG A KV + K+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 AEAMEKVGNDGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNADKMRVEFEDPYILIHEKKLSNLQSMLPVLEAVVQSSKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTAGTVISEDLGIKLESVTLDMLGRAKKVSIEKENTTIVDGSGAKTDIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH601_VIBVY (60 kDa chaperonin 1 OS=Vibrio vulnificus (strain YJ016) GN=groL1 PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.059e-67
Identity = 132/224 (58.93%), Postives = 170/224 (75.89%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVGR GV+T+EEG++  + L VVEGMQFDRGY+SPYF+ + E  +VE E+  +LLVDKKI+N R+L+  LE   + + P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +EVGL L+K   E LG A +V +TK+ TTI+     +  +  RVAQIR  IE+A  DY++EKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMEKVGRDGVITVEEGQALHDELDVVEGMQFDRGYLSPYFINNQESGSVELESPFILLVDKKISNIRELLPALEAVAKASRPLLIIAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLELEKATLEDLGQAKRVSITKENTTIIDGVGEEAMIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH601_VIBVU (60 kDa chaperonin 1 OS=Vibrio vulnificus GN=groL1 PE=3 SV=2)

HSP 1 Score: 255.373 bits (651), Expect = 2.059e-67
Identity = 132/224 (58.93%), Postives = 170/224 (75.89%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVGR GV+T+EEG++  + L VVEGMQFDRGY+SPYF+ + E  +VE E+  +LLVDKKI+N R+L+  LE   + + P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +EVGL L+K   E LG A +V +TK+ TTI+     +  +  RVAQIR  IE+A  DY++EKL ER+AKL+GGVAVI+VGA TE
Sbjct:  163 AEAMEKVGRDGVITVEEGQALHDELDVVEGMQFDRGYLSPYFINNQESGSVELESPFILLVDKKISNIRELLPALEAVAKASRPLLIIAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLELEKATLEDLGQAKRVSITKENTTIIDGVGEEAMIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_RHILW (60 kDa chaperonin OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=groL PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.690e-67
Identity = 130/224 (58.04%), Postives = 169/224 (75.45%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG  GV+T+EE K+AE  L VVEGMQFDRGY+SPYFVT+ EKM  + E+  +LL +KK++N + ++ VLE  ++   P+LIIAED+E EALATLVVNKLRG LKIAA+KAPGFG+R+   L+DIAILTGGTVI +++G+ L+ V  ++LG A KV ++K+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 AEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMIADLEDVFILLHEKKLSNLQSMLPVLEAVVQTGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLESVTLDMLGRAKKVSISKENTTIVDGSGAKSDIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTE 386          
BLAST of FC920519 vs. ExPASy Swiss-Prot
Match: CH60_RHILV (60 kDa chaperonin OS=Rhizobium leguminosarum bv. viciae GN=groL PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.690e-67
Identity = 129/224 (57.59%), Postives = 170/224 (75.89%), Query Frame = 2
Query:    5 AGAMSKVGRTGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTE 676
            A AM KVG  GV+T+EE K+AE  L VVEGMQFDRGY+SPYFVT+ EKM  + E+  +LL +KK++N + ++ VLE  ++   P+LI+AED+E EALATLVVNKLRG LKIAA+KAPGFG+R+ + L+DIAILTGGTVI +++G+ L+ V  ++LG A KV ++K+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE
Sbjct:  163 AEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMIADLEDVFILLHEKKLSNLQSMLPVLEAVVQTGKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKRMLEDIAILTGGTVISEDLGIKLESVTLDMLGRAKKVSISKENTTIVDGSGAKTDIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTE 386          
The following BLAST results are available for this feature:
BLAST of FC920519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_PSEPW2.059e-6759.5660 kDa chaperonin OS=Pseudomonas putida (strain W6... [more]
CH60_PHOLL2.059e-6757.5960 kDa chaperonin OS=Photorhabdus luminescens subs... [more]
CH60_HELPS2.059e-6759.1160 kDa chaperonin OS=Helicobacter pylori (strain S... [more]
CH60_HELAH2.059e-6759.1160 kDa chaperonin OS=Helicobacter acinonychis (str... [more]
CH60_GEOSL2.059e-6759.2960 kDa chaperonin OS=Geobacter sulfurreducens GN=g... [more]
CH602_RHILE2.059e-6757.5960 kDa chaperonin 2 OS=Rhizobium leguminosarum GN=... [more]
CH601_VIBVY2.059e-6758.9360 kDa chaperonin 1 OS=Vibrio vulnificus (strain Y... [more]
CH601_VIBVU2.059e-6758.9360 kDa chaperonin 1 OS=Vibrio vulnificus GN=groL1 ... [more]
CH60_RHILW2.690e-6758.0460 kDa chaperonin OS=Rhizobium leguminosarum bv. t... [more]
CH60_RHILV2.690e-6757.5960 kDa chaperonin OS=Rhizobium leguminosarum bv. v... [more]

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Properties
Property NameValue
Genbank descriptionC32009E02EF RVDevelop1 Citrus clementina cDNA clone C32009E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920519 ID=FC920519; Name=FC920519; organism=Citrus clementina; type=EST; length=679bp
CTCTGCCGGGGCCATGAGTAAAGTGGGACGTACGGGTGTGGTGACCCTTG
AAGAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGAGGGAATGCAA
TTTGATCGTGGTTATATTTCTCCCTACTTCGTCACTGATAGTGAGAAAAT
GGCAGTTGAATATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTA
CCAATGCAAGGGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCA
TACCCAATTTTGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAAC
TCTTGTCGTGAACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAG
CTCCTGGTTTTGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATT
TTGACTGGAGGAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAA
AGTTGGCAAGGAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGG
ATACCACCACCATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAA
CGAGTGGCGCAAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGA
AAGGGAGAAGCTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTG
TCATACAGGTTGGAGCTCAAACTGAGACA
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