FC920520

Overview
NameFC920520
Unique NameFC920520
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.261e-27
Identity = 69/182 (37.91%), Postives = 107/182 (58.79%), Query Frame = 2
Query:  194 EVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR-TYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKIY 736
            ++ ++F+ +++ + + Y +  E   R  +F  N+    +  + +R T + G+ +F+DLT EE+R+++L      K    K K++      VG+  P   DWR KGAV +VKDQG CGSCWAFS    VEG   +  G+L+SLSEQEL+DCD   ++ C GGL   A+  I + GG++TE  Y
Sbjct:  182 KMASIFKNFVITYNRTYESKEEARWRLSVFVNNMVRAQKIQALDRGTAQYGVTKFSDLTEEEFRTIYLNTLL-RKEPGNKMKQAKS----VGDLAPPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCD-KMDKACMGGLPSNAYSAIKNLGGLETEDDY 357          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CATV_NPVAP (Viral cathepsin OS=Antheraea pernyi nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.259e-27
Identity = 70/184 (38.04%), Postives = 106/184 (57.61%), Query Frame = 2
Query:  209 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNR----YLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKIYPTKA 748
            FE +L K  K Y++  EK +RF+IF+ NL  I   N  + + +  +N+F+DL+ +E  S + G        SL  ++ N      L R  +  P   DWR+   V  VK+QG CG+CWAF+T+ ++E    I    LI+LSEQ+L+DCD   + GC+GGL+  A+E +++ GGI  E  YP +A
Sbjct:   28 FEEFLHKFNKNYSSESEKLRRFKIFQHNLEEIINKNQNDTSAQYEINKFSDLSKDETISKYTGL-------SLPLQKQNFCEVVVLDRPPDKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHDQLINLSEQQLIDCD-FVDVGCDGGLLHTAYEAVMNMGGIQAENDYPYEA 203          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CATL1_CHICK (Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.259e-27
Identity = 58/92 (63.04%), Postives = 68/92 (73.91%), Query Frame = 2
Query:  476 PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCD-TSYNEGCNGGLMDYAFEFIIDNGGIDTEKIYPTKA 748
            P SVDWR+KG V  VKDQG CGSCWAFST  A+EG +    G L+SLSEQ LVDC     N+GCNGGLMD AF+++ DNGGID+E+ YP  A
Sbjct:    2 PRSVDWREKGYVTPVKDQGQCGSCWAFSTTGALEGQHFRTKGKLVSLSEQNLVDCSRPEGNQGCNGGLMDQAFQYVQDNGGIDSEESYPYTA 93          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: ACP1_ENTHI (Cysteine proteinase ACP1 OS=Entamoeba histolytica GN=ACP1 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.259e-27
Identity = 74/182 (40.66%), Postives = 100/182 (54.95%), Query Frame = 2
Query:  209 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEH-NSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEG-INKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKIYPTKA 748
            F+ W   H K +    E   RF +F +N +F++ + N+E       LN FAD+T+EE+   HLG  +    T+   K + +       A P+SVDWR    +   KDQG CGSCW F T A +EG +NK + G L S SEQ+LVDCD S N GC GG    + +FI +N G+  E  YP KA
Sbjct:   18 FKQWAATHNKVFANRAEYLYRFAVFLDNKKFVEANANTE-------LNVFADMTHEEFIQTHLGMTYEVPETTSNVKAAVK-------AAPESVDWRS--IMNPAKDQGQCGSCWTFCTTAVLEGRVNKDL-GKLYSFSEQQLVDCDASDN-GCEGGHPSNSLKFIQENNGLGLESDYPYKA 181          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CATV_NPVOP (Viral cathepsin OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.239e-26
Identity = 71/181 (39.23%), Postives = 100/181 (55.25%), Query Frame = 2
Query:  209 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNR----YLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKIYP 739
            FE +L K  K Y++  EK  RF+IF+ NL  I   N  + T +  +N+F+DL+ EE  S + G        SL  +  N      L R  +  P   DWR+   V  VK+QG CG+CWAF+T+ ++E    I    LI+LSEQ+ +DCD   N GC+GGL+  AFE  ++ GG+  E  YP
Sbjct:   28 FEDFLHKFNKNYSSESEKLHRFKIFQHNLEEIINKNQNDSTAQYEINKFSDLSKEEAISKYTGL-------SLPHQTQNFCEVVILDRPPDRGPLEFDWRQFNKVTSVKNQGVCGACWAFATLGSLESQFAIKYNRLINLSEQQFIDCD-RVNAGCDGGLLHTAFESAMEMGGVQMESDYP 200          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CATV_NPVMC (Viral cathepsin OS=Mamestra configurata nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.239e-26
Identity = 69/181 (38.12%), Postives = 101/181 (55.80%), Query Frame = 2
Query:  209 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEAL-PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKIYPTKA 748
            FE ++ ++ K Y++  EK+ R+ IF+ N+  I+  NS N +    +NRFAD+T  E  + H G   G    +         +   G+   P + DWR    V  VKDQG CG+CWAF+ + A+E    I    LI L+EQ+LVDCD   + GC+GGL+  A+E I+  GG++ E  YP KA
Sbjct:   40 FEKFISQYNKQYSSEDEKKYRYNIFRHNIESINAKNSRNDSAVYKINRFADMTKNEVVNRHTGLASGDIGANFCE---TIVVDGPGQRQRPANFDWRNYNKVTSVKDQGMCGACWAFAGLGALESQYAIKYDRLIDLAEQQLVDCD-FVDMGCDGGLIHTAYEQIMHIGGVEQEYDYPYKA 216          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CATV_NPVHZ (Viral cathepsin OS=Heliothis zea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.761e-26
Identity = 71/196 (36.22%), Postives = 104/196 (53.06%), Query Frame = 2
Query:  191 DEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN------------RTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEA-LPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKIYP 739
            D+    F+ +L ++ K+Y+   E + R+ +FK+NL  I+  N EN             + + G+N+F+D T +E   +H    F    +   +   NR +    +  LPD  DWR    V  +KDQG CGSCWAF  I  +E    I    LI LSEQ+L+DCD   + GCNGGLM  AF+ ++  GG++TE  YP
Sbjct:   51 DQSEIYFKHFLQQYNKSYDDPKEYQYRYNVFKDNLNKINSQNRENLLNNKNNNDSLSTSAQFGVNKFSDKTPDEV--LHSNTGFFLNLSQHYTLCENRIVKGAPDIRLPDYYDWRDTNKVTPIKDQGVCGSCWAFVAIGNIESQYAIRHNKLIDLSEQQLLDCD-EVDLGCNGGLMHLAFQELLLMGGVETEADYP 243          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CATV_NPVBS (Viral cathepsin OS=Buzura suppressaria nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.606e-26
Identity = 66/177 (37.29%), Postives = 98/177 (55.37%), Query Frame = 2
Query:  209 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKIYP 739
            FE +L  + K YN   EKE+RF IF++ L  I+  N  N +    +N+FADL+  E  S + G     + T+          P  G   P + DWR++  V  +K+Q +CG+CWAF+T+A++E    I     I LSEQ+++DCD   + GC+GGL+  AFE +I  G +  E  YP
Sbjct:   31 FETFLANYNKMYNDTSEKERRFSIFQQTLEEINYKNRLNDSAVYQINKFADLSKNEIISKYTGLNMPVQTTNFCKTIVIDQPPGKG---PLNFDWRQQNKVTSIKNQKACGACWAFATLASIESQYAIKNNVHIDLSEQQMIDCD-YVDMGCDGGLLHTAFEQMIQMGELVQEHEYP 203          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CATV_NPVAC (Viral cathepsin OS=Autographa californica nuclear polyhedrosis virus GN=VCATH PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 69/180 (38.33%), Postives = 102/180 (56.67%), Query Frame = 2
Query:  209 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKIYPTKA 748
            FE ++ +  K Y +  EK +RF+IF+ NL  I   N +N + K  +N+F+DL+ +E  + + G     +  +          P  G   P   DWR+   V  VK+QG CG+CWAF+T+A++E    I    LI+LSEQ+++DCD   + GCNGGL+  AFE II  GG+  E  YP +A
Sbjct:   28 FEEFVHRFNKDYGSEVEKLRRFKIFQHNLNEIINKN-QNDSAKYEINKFSDLSKDETIAKYTGLSLPIQTQNFCKVIVLDQPPGKG---PLEFDWRRLNKVTSVKNQGMCGACWAFATLASLESQFAIKHNQLINLSEQQMIDCD-FVDAGCNGGLLHTAFEAIIKMGGVQLESDYPYEA 202          
BLAST of FC920520 vs. ExPASy Swiss-Prot
Match: CATV_NPVSE (Viral cathepsin OS=Spodoptera exigua nuclear polyhedrosis virus (strain US) GN=VCATH PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.150e-26
Identity = 67/180 (37.22%), Postives = 96/180 (53.33%), Query Frame = 2
Query:  209 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEKIYPTKA 748
            FE ++ ++ K Y +  EK+ R+ IF+ N+  I++ NS N +    +NRFAD+   E    H G   G     L    +           P S DWR    +  VKDQG CG+CW F+++ A+E    I    LI LSEQ+LVDCD   + GC+GGL+  A+E I+  GG++ E  Y  KA
Sbjct:   40 FEKFITQYNKQYKSEDEKKYRYNIFRHNIESINQKNSRNDSAVYKINRFADMPKNEIVIRHTGLASG--ELGLNFCETIVVDGPAQRQRPVSFDWRSMNKITSVKDQGMCGACWRFASLGALESQYAIKYDRLIDLSEQQLVDCD-FVDMGCDGGLIHTAYEQIMKMGGVEQEFDYSYKA 216          
The following BLAST results are available for this feature:
BLAST of FC920520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
CATF_HUMAN3.261e-2737.91Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]
CATV_NPVAP4.259e-2738.04Viral cathepsin OS=Antheraea pernyi nuclear polyhe... [more]
CATL1_CHICK4.259e-2763.04Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1... [more]
ACP1_ENTHI4.259e-2740.66Cysteine proteinase ACP1 OS=Entamoeba histolytica ... [more]
CATV_NPVOP1.239e-2639.23Viral cathepsin OS=Orgyia pseudotsugata multicapsi... [more]
CATV_NPVMC1.239e-2638.12Viral cathepsin OS=Mamestra configurata nucleopoly... [more]
CATV_NPVHZ2.761e-2636.22Viral cathepsin OS=Heliothis zea nuclear polyhedro... [more]
CATV_NPVBS3.606e-2637.29Viral cathepsin OS=Buzura suppressaria nuclear pol... [more]
CATV_NPVAC4.709e-2638.33Viral cathepsin OS=Autographa californica nuclear ... [more]
CATV_NPVSE6.150e-2637.22Viral cathepsin OS=Spodoptera exigua nuclear polyh... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32009E03EF RVDevelop1 Citrus clementina cDNA clone C32009E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920520 ID=FC920520; Name=FC920520; organism=Citrus clementina; type=EST; length=752bp
CCTCATCAATCCATCTTCTTCTCCCAAAAAGAAAAAAAAAAAGTTCTTTT
CTCAAAAGATGGGTTTGTTTAGATCACCAACCATGGCCATGTTTTTACTT
TTTCTCTTCACTGTTTCATCTGCCTTGGACATGTCGATTGTATCTTATGA
TAAAACCCATGAGTCAAAATCTAGCAGCTGGAGGACCGACGATGAGGTTA
TGGCTATGTTCGAGGCCTGGCTCGTGAAGCATGGCAAGGCTTATAACGCT
TTGGGTGAAAAAGAGAAGAGGTTTGAGATCTTTAAGGAAAATCTTAGGTT
TATTGATGAACATAACTCAGAGAACCGGACCTACAAGGTTGGGTTGAACC
GGTTTGCTGATTTGACCAACGAGGAGTACCGGTCCATGCATCTGGGTGCA
CGCTTTGGTGCTAAAAGGACTTCCTTGAAATCAAAGAGGAGCAACCGTTA
TCTGCCACGTGTCGGCGAGGCGTTGCCGGACTCTGTTGATTGGAGGAAGA
AAGGAGCTGTCGCTGAAGTTAAAGATCAAGGAAGCTGTGGGAGTTGCTGG
GCATTTTCAACCATTGCAGCTGTAGAGGGTATAAACAAGATTGTTACAGG
TAGCCTGATCTCACTATCCGAGCAGGAGTTGGTGGATTGTGATACATCAT
ATAATGAAGGATGTAATGGTGGTTTGATGGACTATGCATTCGAGTTCATT
ATTGATAATGGAGGTATTGACACAGAGAAGATTTACCCTACAAAAGCATG
AT
back to top