FC920525

Overview
NameFC920525
Unique NameFC920525
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920525_ssr43 microsatellite FC920525_ssr43:43..54. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15182 contig Ccv1_Contig15182:1..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920525 vs. ExPASy Swiss-Prot
Match: DCEB_LISMO (Glutamate decarboxylase beta OS=Listeria monocytogenes GN=gadB PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.105e-31
Identity = 68/178 (38.20%), Postives = 108/178 (60.67%), Query Frame = 3
Query:  162 TETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECIKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY--DKPNIVTGANVQVCWEKFARYFEVELKEV 689
            ++ +    L   F S      IP++ +    +    AY+++ DEL+ +G+ R NLA+F  T+ME E  KL+  ++ KN +D  EYP T EL+NRCVN+IA L++ P   D+  +G  T+GSSEA ML G+A K  W+++ ++ G      KPN+V  +  QVCWEKF  Y++++++ V
Sbjct:    4 SKENKESYLEPVFGSSAEDRDIPKYTLGKEPLEPRIAYRLVKDELLDEGSARQNLATFCQTYMEDEATKLMSETLEKNAIDKSEYPRTAELENRCVNIIADLWHAP--KDQKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAKKPNLVISSGYQVCWEKFCVYWDIDMRVV 179          
BLAST of FC920525 vs. ExPASy Swiss-Prot
Match: DCEA_LISMO (Glutamate decarboxylase alpha OS=Listeria monocytogenes GN=gadA PE=3 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 6.065e-30
Identity = 65/157 (41.40%), Postives = 101/157 (64.33%), Query Frame = 3
Query:  225 IPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECIKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY--DKPNIVTGANVQVCWEKFARYFEVELKEV 689
            +P  +M   S+    AYQ++ D+L+ +G+ R NLA+F  T+MEPE  +++  ++ KN +D  EYP T +L++ CVNM+A L+N  V + +  +G  TVGSSEA ML G+A K +W+    + G      KP++V  +  QVCWEKF  Y+++EL+EV
Sbjct:   23 LPEKRMNKESVDPRIAYQLVKDQLIDEGSARQNLATFCQTYMEPEAEQIMAETMEKNAIDKSEYPQTAKLESSCVNMLADLWN--VDESEHYMGTSTVGSSEACMLGGMAMKFRWRSAALKNGLDIHAKKPSLVISSGYQVCWEKFCVYWDIELREV 177          
The following BLAST results are available for this feature:
BLAST of FC920525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCEB_LISMO1.105e-3138.20Glutamate decarboxylase beta OS=Listeria monocytog... [more]
DCEA_LISMO6.065e-3041.40Glutamate decarboxylase alpha OS=Listeria monocyto... [more]

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Properties
Property NameValue
Genbank descriptionC32009E08EF RVDevelop1 Citrus clementina cDNA clone C32009E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920525 ID=FC920525; Name=FC920525; organism=Citrus clementina; type=EST; length=693bp
GCCACCGAAGAGTGAAAAGCGAAGTTGTCATCAAAAGTCAAAACTCACTC
ACTCTCAATCGCTCTCTTTCCTTTGTGTCTCAACAATTTCTATTCATTTC
TCTCAGACTCAAGAGCCTCTCTTCTCTGCAAAAAACAAAAACAAAAATGG
TGATTTCAACAACAGAAACAGACTCCAGGGAGATTTTGAGCTCCACATTT
GCTTCAAGATATGTCCGTGCTGCTATTCCCAGATTCAAGATGCCAGATAA
TTCAATGCCAAAGGAGGCAGCCTATCAGGTAATAAATGATGAGCTGATGT
TAGATGGAAATCCAAGGCTGAACTTGGCATCTTTTGTGACCACTTGGATG
GAGCCCGAGTGTATTAAGCTTGTCATGGCTTCGATTAATAAAAACTATGT
TGACATGGATGAATACCCTGTAACCACAGAGCTCCAGAATCGGTGTGTGA
ATATGATTGCCCACCTATTTAATACTCCAGTTGCGGATGACAAGACTGCA
GTGGGCGTGGGGACTGTAGGTTCATCAGAGGCAATAATGCTTGCTGGCTT
GGCTTTTAAAAGGAAGTGGCAGCAGAAGAGAAAAGAGCAAGGCAAACCCT
ATGATAAGCCCAATATAGTCACTGGAGCTAATGTGCAGGTATGCTGGGAG
AAATTTGCGAGGTACTTTGAGGTTGAGCTGAAGGAGGTGAAAC
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