FC920529

Overview
NameFC920529
Unique NameFC920529
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920529_ssr32 microsatellite FC920529_ssr32:32..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE42_HALSA (NADP-specific glutamate dehydrogenase B OS=Halobacterium salinarium GN=gdhB PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.068e-46
Identity = 96/192 (50.00%), Postives = 119/192 (61.98%), Query Frame = 3
Query:  135 ALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHS-PAVVTGKPIDLGGSLGREAATGRGVVYAT 707
            AL    R  + AA  + +   +   L  P R ++V   + +DDG++  Y G+R QHDD RGP KGG+RYHP V  +E   L+  MTWK AV D+P+GGAKGG+   PK LS  E ERLTR F  ++ D +G   DIPAPDMGT+AQTMAW +D YS   G + P VVTGKP   GGS GR  A GR V  AT
Sbjct:   20 ALETARRQLQAAAEHVDIADGVIERLTHPTRVVQVSVPVERDDGTVTVYDGYRAQHDDVRGPYKGGLRYHPGVSAEECVGLSMWMTWKCAVMDLPFGGAKGGVVVDPKTLSADEHERLTRRFAAELRDEVGPSQDIPAPDMGTDAQTMAWFMDAYSMQQGETVPGVVTGKPPVAGGSHGRAEAPGRSVAIAT 211          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE2_CLODI (NAD-specific glutamate dehydrogenase OS=Clostridium difficile GN=gluD PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.522e-45
Identity = 94/190 (49.47%), Postives = 121/190 (63.68%), Query Frame = 3
Query:  129 MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSP-AVVTGKPIDLGGSLGREAATGRGV 695
            +N         +NA   LG++  +   L  P R I+V   +  DDGS+ ++ GFR QH+DA GP KGGIR+H  V  DEV AL+  MT+K +V  IPYGG KGGI   P  LS  ELERL+R +   I+ LIG   D+PAPD+ TN Q M+W++DEY+K  G S   V+TGKP++ GGSLGR AATG GV
Sbjct:    6 VNVFEMAQSQVKNACDKLGMEPAVYELLKEPMRVIEVSIPVKMDDGSIKTFKGFRSQHNDAVGPTKGGIRFHQNVSRDEVKALSIWMTFKCSVTGIPYGGGKGGIIVDPSTLSQGELERLSRGYIDGIYKLIGEKVDVPAPDVNTNGQIMSWMVDEYNKLTGQSSIGVITGKPVEFGGSLGRTAATGFGV 195          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE2_STAAW (NAD-specific glutamate dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=gluD PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.392e-45
Identity = 90/196 (45.92%), Postives = 129/196 (65.82%), Query Frame = 3
Query:  132 NALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYS---KFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATE 710
            N + +T    + A   LG D  +   +  P R ++V   +  DDG++ ++ G+R QH+DA GP KGG+R+HP+VD +EV AL+  MT K  + ++PYGG KGGI C P+++S  E+ERL+R + + I   +G + DIPAPD+ TN+Q MAW++DEYS   KF  +SP  +TGKPI LGGS GR+ +T  GVV A E
Sbjct:    6 NLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDAVGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKF--NSPGFITGKPIVLGGSHGRDRSTALGVVIAIE 199          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE2_STAAS (NAD-specific glutamate dehydrogenase OS=Staphylococcus aureus (strain MSSA476) GN=gluD PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.392e-45
Identity = 90/196 (45.92%), Postives = 129/196 (65.82%), Query Frame = 3
Query:  132 NALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYS---KFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATE 710
            N + +T    + A   LG D  +   +  P R ++V   +  DDG++ ++ G+R QH+DA GP KGG+R+HP+VD +EV AL+  MT K  + ++PYGG KGGI C P+++S  E+ERL+R + + I   +G + DIPAPD+ TN+Q MAW++DEYS   KF  +SP  +TGKPI LGGS GR+ +T  GVV A E
Sbjct:    6 NLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDAVGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKF--NSPGFITGKPIVLGGSHGRDRSTALGVVIAIE 199          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE2_STAAR (NAD-specific glutamate dehydrogenase OS=Staphylococcus aureus (strain MRSA252) GN=gluD PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.392e-45
Identity = 90/196 (45.92%), Postives = 129/196 (65.82%), Query Frame = 3
Query:  132 NALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYS---KFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATE 710
            N + +T    + A   LG D  +   +  P R ++V   +  DDG++ ++ G+R QH+DA GP KGG+R+HP+VD +EV AL+  MT K  + ++PYGG KGGI C P+++S  E+ERL+R + + I   +G + DIPAPD+ TN+Q MAW++DEYS   KF  +SP  +TGKPI LGGS GR+ +T  GVV A E
Sbjct:    6 NLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDAVGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKF--NSPGFITGKPIVLGGSHGRDRSTALGVVIAIE 199          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE2_STAAN (NAD-specific glutamate dehydrogenase OS=Staphylococcus aureus (strain N315) GN=gluD PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.392e-45
Identity = 90/196 (45.92%), Postives = 129/196 (65.82%), Query Frame = 3
Query:  132 NALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYS---KFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATE 710
            N + +T    + A   LG D  +   +  P R ++V   +  DDG++ ++ G+R QH+DA GP KGG+R+HP+VD +EV AL+  MT K  + ++PYGG KGGI C P+++S  E+ERL+R + + I   +G + DIPAPD+ TN+Q MAW++DEYS   KF  +SP  +TGKPI LGGS GR+ +T  GVV A E
Sbjct:    6 NLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDAVGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKF--NSPGFITGKPIVLGGSHGRDRSTALGVVIAIE 199          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE2_STAAM (NAD-specific glutamate dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gluD PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.392e-45
Identity = 90/196 (45.92%), Postives = 129/196 (65.82%), Query Frame = 3
Query:  132 NALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYS---KFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATE 710
            N + +T    + A   LG D  +   +  P R ++V   +  DDG++ ++ G+R QH+DA GP KGG+R+HP+VD +EV AL+  MT K  + ++PYGG KGGI C P+++S  E+ERL+R + + I   +G + DIPAPD+ TN+Q MAW++DEYS   KF  +SP  +TGKPI LGGS GR+ +T  GVV A E
Sbjct:    6 NLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDAVGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKF--NSPGFITGKPIVLGGSHGRDRSTALGVVIAIE 199          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE2_STAAC (NAD-specific glutamate dehydrogenase OS=Staphylococcus aureus (strain COL) GN=gluD PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.392e-45
Identity = 90/196 (45.92%), Postives = 129/196 (65.82%), Query Frame = 3
Query:  132 NALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYS---KFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATE 710
            N + +T    + A   LG D  +   +  P R ++V   +  DDG++ ++ G+R QH+DA GP KGG+R+HP+VD +EV AL+  MT K  + ++PYGG KGGI C P+++S  E+ERL+R + + I   +G + DIPAPD+ TN+Q MAW++DEYS   KF  +SP  +TGKPI LGGS GR+ +T  GVV A E
Sbjct:    6 NLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDAVGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKF--NSPGFITGKPIVLGGSHGRDRSTALGVVIAIE 199          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE2_BACSU (NAD-specific glutamate dehydrogenase OS=Bacillus subtilis GN=rocG PE=1 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 3.750e-44
Identity = 89/195 (45.64%), Postives = 124/195 (63.59%), Query Frame = 3
Query:  129 MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHG-HSPAVVTGKPIDLGGSLGREAATGRGVVYATE 710
            +N   +T    + A R LG    +   +  P R + V   +  D+GS+  + G+R QH+DA GP KGG+R+HPEV+ +EV AL+  MT K  +A++PYGG KGGI C P+ +S  ELERL+R + + I  ++G   DIPAPD+ TN+Q MAW++DEYS+     SP  +TGKP+ LGGS GRE AT +GV    E
Sbjct:   15 LNLFLSTQTIIKEALRKLGYPGDMYELMKEPQRMLTVRIPVKMDNGSVKVFTGYRSQHNDAVGPTKGGVRFHPEVNEEEVKALSIWMTLKCGIANLPYGGGKGGIICDPRTMSFGELERLSRGYVRAISQIVGPTKDIPAPDVYTNSQIMAWMMDEYSRLREFDSPGFITGKPLVLGGSQGRETATAQGVTICIE 209          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE3_THEPR (Glutamate dehydrogenase OS=Thermococcus profundus GN=gdhA PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.396e-44
Identity = 89/186 (47.85%), Postives = 119/186 (63.98%), Query Frame = 3
Query:  153 RNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYS---KFHGHSPAVVTGKPIDLGGSLGREAATGRGVVY 701
            +    AA+ + +  +    L  P R ++V   I  DDGS+  + GFRVQH+ ARGP KGGIR+HP      V ALA  MTWK AV D+PYGG KGGI  +PKELS  E ERL R + + ++D+IG  TDIPAPD+ TN + M W++DEY    +  G +  V+TGKP+ +GGSLGR  AT +G ++
Sbjct:   12 KQLERAAQYMDISEEALEWLKKPMRIVEVSVPIEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPAETLSTVKALATWMTWKVAVVDLPYGGGKGGIIVNPKELSEREQERLARAYIRAVYDVIGPWTDIPAPDVYTNPKIMGWMMDEYETIMRRKGPAFGVITGKPLSIGGSLGRGTATAQGAIF 197          
The following BLAST results are available for this feature:
BLAST of FC920529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
DHE42_HALSA3.068e-4650.00NADP-specific glutamate dehydrogenase B OS=Halobac... [more]
DHE2_CLODI1.522e-4549.47NAD-specific glutamate dehydrogenase OS=Clostridiu... [more]
DHE2_STAAW3.392e-4545.92NAD-specific glutamate dehydrogenase OS=Staphyloco... [more]
DHE2_STAAS3.392e-4545.92NAD-specific glutamate dehydrogenase OS=Staphyloco... [more]
DHE2_STAAR3.392e-4545.92NAD-specific glutamate dehydrogenase OS=Staphyloco... [more]
DHE2_STAAN3.392e-4545.92NAD-specific glutamate dehydrogenase OS=Staphyloco... [more]
DHE2_STAAM3.392e-4545.92NAD-specific glutamate dehydrogenase OS=Staphyloco... [more]
DHE2_STAAC3.392e-4545.92NAD-specific glutamate dehydrogenase OS=Staphyloco... [more]
DHE2_BACSU3.750e-4445.64NAD-specific glutamate dehydrogenase OS=Bacillus s... [more]
DHE3_THEPR6.396e-4447.85Glutamate dehydrogenase OS=Thermococcus profundus ... [more]

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Properties
Property NameValue
Genbank descriptionC32009E12EF RVDevelop1 Citrus clementina cDNA clone C32009E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920529 ID=FC920529; Name=FC920529; organism=Citrus clementina; type=EST; length=743bp
GATTCATTCACATTCGCATTCACAAAAGCTAATTCATTCATTCATTCATT
CATATATTCTTGTTCAAAAGCCCCATCAGTGGTTTTAGCTCTCTTTTAAC
TTGTTTCGAAAGTTTCAGAATCATCGTCATGAACGCTCTTGCAGCAACGA
GCCGTAACTTTCGCAACGCTGCACGCATTCTTGGGCTTGACTCTAAGCTT
GAGAGGAGTCTTCTGATCCCTTTTAGAGAGATCAAAGTGGAGTGCACTAT
CCCCAAAGATGATGGAAGTCTGGTTTCGTACGTTGGATTTAGAGTACAGC
ATGATGACGCACGTGGGCCCATGAAGGGAGGCATCAGATATCATCCTGAG
GTTGATCCTGATGAAGTAAATGCTCTGGCTCAACTAATGACCTGGAAGAC
TGCTGTGGCAGATATACCATATGGTGGAGCAAAGGGTGGAATTGGATGCA
GCCCAAAAGAATTAAGCAACAGTGAGCTGGAACGTCTAACTCGCGTTTTC
ACTCAGAAGATACATGACCTCATTGGAATCCATACTGACATACCAGCCCC
GGACATGGGAACAAATGCCCAGACTATGGCATGGATTTTGGATGAGTACT
CAAAATTTCATGGTCACTCTCCTGCTGTCGTCACAGGAAAGCCCATTGAT
CTTGGCGGATCACTAGGTAGAGAGGCTGCAACTGGGCGTGGTGTCGTTTA
TGCTACAGAGCTCTACTTGCTGAACATGGACAGGCATTAGGGA
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