FC920529

Overview
NameFC920529
Unique NameFC920529
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_SYNY3 (NADP-specific glutamate dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=gdhA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.354e-44
Identity = 92/200 (46.00%), Postives = 123/200 (61.50%), Query Frame = 3
Query:  141 AATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH-SPAVVTGKPIDLGGSLGREAATGRGVVYATELYLLNMDRH 737
            A  S+    A + + +       L  P   + V   +  DDGSL  + G+RV++DD RGP KGG+RYHP V  DEV +LA  MT+K A+ ++P+GGAKGGI  +PKELS +ELERL+R + + I D IG   DI APD+ TN   M W++D+YS      SPAVVTGKP+ +GGS GR  ATG G  Y  +  L   D++
Sbjct:    7 ADASKRLEKALKYVAISDDAGERLKYPKTSLSVSIPVRMDDGSLKIFPGYRVRYDDTRGPGKGGVRYHPNVTMDEVQSLAFWMTFKCALLNLPFGGAKGGITLNPKELSRAELERLSRGYIEAIADFIGPDIDILAPDVYTNEMMMGWMMDQYSIIRRKISPAVVTGKPVTMGGSQGRNTATGTGAFYIMQGMLPKFDQY 206          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE3_PYRFU (Glutamate dehydrogenase OS=Pyrococcus furiosus GN=gdhA PE=1 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.425e-43
Identity = 92/186 (49.46%), Postives = 120/186 (64.52%), Query Frame = 3
Query:  153 RNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKF-HGHSPA--VVTGKPIDLGGSLGREAATGRGVVY 701
            +    AA+ + +  +    L  P R ++V   +  DDGS+  + GFRVQH+ ARGP KGGIR+HPE     V ALA  MTWKTAV D+PYGG KGGI   PK+LS+ E ERL R + + I+D+I  + DIPAPD+ TN Q MAW++DEY       +PA  ++TGKP+ +GGSLGR  AT RG  Y
Sbjct:   12 KQLERAAQYMEISEEALEFLKRPQRIVEVTIPVEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLARGYIRAIYDVISPYEDIPAPDVYTNPQIMAWMMDEYETISRRKTPAFGIITGKPLSIGGSLGRIEATARGASY 197          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE3_THELI (Glutamate dehydrogenase OS=Thermococcus litoralis GN=gdhA PE=1 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 3.174e-43
Identity = 90/186 (48.39%), Postives = 120/186 (64.52%), Query Frame = 3
Query:  153 RNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEY---SKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVY 701
            +    AA+ + +  +    L  P R ++V   +  DDGS+  + GFRVQ++ ARGP KGGIR+HPE     V ALA  MTWKTAV D+PYGG KGG+ C+PKE+S+ E ERL R + + I+D+I  +TDIPAPD+ TN Q MAW++DEY   S+    S  V+TGKP  +GG + R  AT RG  Y
Sbjct:   12 KQLERAAQYMDISEEALEFLKRPQRIVEVSIPVEMDDGSVKVFTGFRVQYNWARGPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGVICNPKEMSDREKERLARGYVRAIYDVISPYTDIPAPDVYTNPQIMAWMMDEYETISRRKDPSFGVITGKPPSVGGIVARMDATARGASY 197          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE3_PYRAB (Glutamate dehydrogenase OS=Pyrococcus abyssi GN=gdhA PE=3 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 3.174e-43
Identity = 91/186 (48.92%), Postives = 120/186 (64.52%), Query Frame = 3
Query:  153 RNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKF-HGHSPA--VVTGKPIDLGGSLGREAATGRGVVY 701
            +    AA+ + +  +    L  P R ++V   +  DDGS+  + GFRVQ++ ARGP KGGIR+HPE     V ALA  MTWKTAV D+PYGG KGGI   PK+LS+ E ERL R + + I+D+I  + DIPAPD+ TN Q MAW++DEY       +PA  ++TGKP+ +GGSLGR  AT RG  Y
Sbjct:   12 KQLERAAQYMKISEEALEFLKRPQRIVEVTIPVEMDDGSVKVFTGFRVQYNWARGPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLARGYIRAIYDVISPYEDIPAPDVYTNPQIMAWMMDEYETIARRKTPAFGIITGKPLSIGGSLGRNEATARGASY 197          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE3_AERPE (Glutamate dehydrogenase OS=Aeropyrum pernix GN=gdhA PE=3 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 3.174e-43
Identity = 87/185 (47.03%), Postives = 122/185 (65.95%), Query Frame = 3
Query:  162 RNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSLGREAATGRGVVYATEL 713
            R A  +LG D  +   L  P R ++V  TI  DDG++ +++G+R QH+ A GP KGG+RYHP V  +EV AL+  MTWK ++A +PYGG KGG+  +PK LS  ELE L+R + + I D++G+  DIPAPD+ T+ Q M+W LDEY++   G    VVTGKP++LGG   R  +TG GV  +T +
Sbjct:   15 RRAVDLLGYDDYVYEVLANPDRVLQVRVTIKMDDGTVKTFLGWRSQHNSALGPYKGGVRYHPNVTMNEVIALSMWMTWKNSLAGLPYGGGKGGVRVNPKILSPRELELLSRKYFESISDIVGVDQDIPAPDVYTDPQVMSWFLDEYNRVKRGQFFGVVTGKPVELGGLNARIVSTGYGVAVSTRV 199          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE3_PYRHO (Glutamate dehydrogenase OS=Pyrococcus horikoshii GN=gdhA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.415e-43
Identity = 90/186 (48.39%), Postives = 120/186 (64.52%), Query Frame = 3
Query:  153 RNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKF-HGHSPA--VVTGKPIDLGGSLGREAATGRGVVY 701
            +    AA+ + +  +    L  P R ++V   +  DDGS+  + GFRVQ++ ARGP KGGIR+HPE     V ALA  MTWKTAV D+PYGG KGGI   PK+LS+ E ERL R + + ++D+I  + DIPAPD+ TN Q MAW++DEY       +PA  ++TGKP+ +GGSLGR  AT RG  Y
Sbjct:   12 KQLERAAQHMKISEEALEFLKRPQRIVEVTIPVEMDDGSVKVFTGFRVQYNWARGPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLARGYIRAVYDIISPYEDIPAPDVYTNPQIMAWMMDEYETIARRKTPAFGIITGKPLSIGGSLGRNEATARGASY 197          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE3_PYREN (Glutamate dehydrogenase OS=Pyrococcus endeavori GN=gdhA PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.072e-43
Identity = 90/186 (48.39%), Postives = 120/186 (64.52%), Query Frame = 3
Query:  153 RNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKF-HGHSPA--VVTGKPIDLGGSLGREAATGRGVVY 701
            +    AA+ + +  +    L  P R ++V   +  DDG++  + GFRVQ++ ARGP KGGIR+HPE     V ALA  MTWKTAV D+PYGG KGGI   PK+LS+ E ERL R + + I+D+I  + DIPAPD+ TN Q MAW++DEY       +PA  ++TGKP+ +GGSLGR  AT RG  Y
Sbjct:   12 KQLERAAQYMKISEEALEFLKRPQRIVEVTIPVEMDDGTVKVFTGFRVQYNWARGPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLARGYIRAIYDVISPYEDIPAPDVYTNPQIMAWMMDEYEAISRRKTPAFGIITGKPLSIGGSLGRNEATARGASY 197          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE2_SULSO (Glutamate dehydrogenase 2 OS=Sulfolobus solfataricus GN=gdhA-2 PE=1 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 1.575e-42
Identity = 87/174 (50.00%), Postives = 118/174 (67.82%), Query Frame = 3
Query:  177 ILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSP-AVVTGKPIDLGGSLGREAATGRGV 695
            +LGLD++   +L  P R I+V+  I   DG L +++G+R QH+ A GP KGG+RYHP V  DEV AL+ +MTWK ++  +PYGG KGG+   PK+L+  ELE+L+R + Q I+  +G   DIPAPD+ T++QTMAW LDEY K  G    AV TGKP++LGG   R  +TG GV
Sbjct:   24 LLGLDNETLETLSQPERIIQVKIQIRGSDGKLKTFMGWRSQHNSALGPYKGGVRYHPNVTQDEVEALSMIMTWKNSLLLLPYGGGKGGVRVDPKKLTREELEQLSRKYIQAIYKYLGSELDIPAPDVNTDSQTMAWFLDEYIKITGKVDFAVFTGKPVELGGIGVRLYSTGLGV 197          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: GUDB_BACSU (NAD-specific glutamate dehydrogenase OS=Bacillus subtilis GN=gudB PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.687e-42
Identity = 86/193 (44.56%), Postives = 122/193 (63.21%), Query Frame = 3
Query:  129 MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTW---KTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSLGREAATGRGV 695
            ++ L +T      A   LG   ++   L  P R + V+  +  DDGS+  + G+R QH+D+ GP KGGIR+HP V   EV A+  L  W   K  + D+PYGG KGGI C P+++S  ELERL+R + + I  ++G   D+PAPD+ TN+Q MAW++DEYS+    +SP  +TGKP+ LGGS GRE+AT +GV
Sbjct:   15 LDVLKSTQTVIHKALEKLGYPEEVYELLKEPMRLLTVKIPVRMDDGSVKIFTGYRAQHNDSVGPTKGGIRFHPNVTEKEVKAVKALSIWMSLKCGIIDLPYGGGKGGIVCDPRDMSFRELERLSRGYVRAISQIVGPTKDVPAPDVFTNSQIMAWMMDEYSRIDEFNSPGFITGKPLVLGGSHGRESATAKGV 207          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE3_PYRKO (Glutamate dehydrogenase OS=Pyrococcus kodakaraensis GN=gdhA PE=1 SV=4)

HSP 1 Score: 167.162 bits (422), Expect = 8.645e-41
Identity = 86/186 (46.24%), Postives = 115/186 (61.83%), Query Frame = 3
Query:  153 RNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYS---KFHGHSPAVVTGKPIDLGGSLGREAATGRGVVY 701
            +    AA+ + +  +    L  P R ++V   +  DDGS+  + GFRVQH+ ARGP KGGIR+HP      V ALA  MTWK AV D+PYGG KGGI   PK+LS  E ERL R + + ++D+IG  TDIPAPD+ TN + MAW++DEY    +  G +  V+TGKP  +GG + R  AT RG  +
Sbjct:   12 QQLERAAQFMDISEEALEWLKRPMRIVEVSVPVEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPAETLSTVKALATWMTWKVAVVDLPYGGGKGGIIVDPKKLSEREQERLARSYIRAVYDVIGPWTDIPAPDVYTNPKIMAWMMDEYETIMRRKGPAFGVITGKPPGVGGIVARMDATARGAAF 197          
The following BLAST results are available for this feature:
BLAST of FC920529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
DHE4_SYNY38.354e-4446.00NADP-specific glutamate dehydrogenase OS=Synechocy... [more]
DHE3_PYRFU1.425e-4349.46Glutamate dehydrogenase OS=Pyrococcus furiosus GN=... [more]
DHE3_THELI3.174e-4348.39Glutamate dehydrogenase OS=Thermococcus litoralis ... [more]
DHE3_PYRAB3.174e-4348.92Glutamate dehydrogenase OS=Pyrococcus abyssi GN=gd... [more]
DHE3_AERPE3.174e-4347.03Glutamate dehydrogenase OS=Aeropyrum pernix GN=gdh... [more]
DHE3_PYRHO5.415e-4348.39Glutamate dehydrogenase OS=Pyrococcus horikoshii G... [more]
DHE3_PYREN7.072e-4348.39Glutamate dehydrogenase OS=Pyrococcus endeavori GN... [more]
DHE2_SULSO1.575e-4250.00Glutamate dehydrogenase 2 OS=Sulfolobus solfataric... [more]
GUDB_BACSU2.687e-4244.56NAD-specific glutamate dehydrogenase OS=Bacillus s... [more]
DHE3_PYRKO8.645e-4146.24Glutamate dehydrogenase OS=Pyrococcus kodakaraensi... [more]

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Properties
Property NameValue
Genbank descriptionC32009E12EF RVDevelop1 Citrus clementina cDNA clone C32009E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920529 ID=FC920529; Name=FC920529; organism=Citrus clementina; type=EST; length=743bp
GATTCATTCACATTCGCATTCACAAAAGCTAATTCATTCATTCATTCATT
CATATATTCTTGTTCAAAAGCCCCATCAGTGGTTTTAGCTCTCTTTTAAC
TTGTTTCGAAAGTTTCAGAATCATCGTCATGAACGCTCTTGCAGCAACGA
GCCGTAACTTTCGCAACGCTGCACGCATTCTTGGGCTTGACTCTAAGCTT
GAGAGGAGTCTTCTGATCCCTTTTAGAGAGATCAAAGTGGAGTGCACTAT
CCCCAAAGATGATGGAAGTCTGGTTTCGTACGTTGGATTTAGAGTACAGC
ATGATGACGCACGTGGGCCCATGAAGGGAGGCATCAGATATCATCCTGAG
GTTGATCCTGATGAAGTAAATGCTCTGGCTCAACTAATGACCTGGAAGAC
TGCTGTGGCAGATATACCATATGGTGGAGCAAAGGGTGGAATTGGATGCA
GCCCAAAAGAATTAAGCAACAGTGAGCTGGAACGTCTAACTCGCGTTTTC
ACTCAGAAGATACATGACCTCATTGGAATCCATACTGACATACCAGCCCC
GGACATGGGAACAAATGCCCAGACTATGGCATGGATTTTGGATGAGTACT
CAAAATTTCATGGTCACTCTCCTGCTGTCGTCACAGGAAAGCCCATTGAT
CTTGGCGGATCACTAGGTAGAGAGGCTGCAACTGGGCGTGGTGTCGTTTA
TGCTACAGAGCTCTACTTGCTGAACATGGACAGGCATTAGGGA
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