FC920529

Overview
NameFC920529
Unique NameFC920529
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920529_ssr32 microsatellite FC920529_ssr32:32..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_SULSH (NADP-specific glutamate dehydrogenase (Fragment) OS=Sulfolobus shibatae GN=gdhA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.632e-39
Identity = 84/160 (52.50%), Postives = 106/160 (66.25%), Query Frame = 3 
Query:  219 PFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSP-AVVTGKPIDLGGSLGREAATGRGV 695
            P R I+V+  I   DG L +++G+R QH+ A GP KGG+RY P V  DEV AL+ +MTWK ++  +PYGG KGGI   PK+L+  ELE L+R + Q IH+ +G   DIPAPD+ TN QTMAW LDEY K  G    AV TGKP +LGG   R  +TG GV
Sbjct:   10 PERVIQVKIQIRGSDGKLKTFMGWRSQHNSALGPYKGGVRYSPNVTQDEVIALSMIMTWKNSLLLLPYGGGKGGIRVDPKKLTLKELEDLSRKYVQLIHNYLGSDVDIPAPDINTNPQTMAWFLDEYIKITGEVDFAVFTGKPSELGGIGVRLYSTGLGV 169
[Close]
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE2_PEPAS (NAD-specific glutamate dehydrogenase OS=Peptostreptococcus asaccharolyticus PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.091e-39
Identity = 84/191 (43.98%), Postives = 112/191 (58.64%), Query Frame = 3 
Query:  129 MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAV--VTGKPIDLGGSLGREAATGRGV 695
            +N L A     R A   LG D  +   L  P R I++   +  DDG++  + G+R  H  A GP KGG+R+HP V+ DEV AL+  MT+K     +PYGG KGGI   P ELS  ELE+L+R + + ++  +G   DIPAPD+ TN Q M+W +DEY K +G    +   TGKP+  GGS GR  ATG GV
Sbjct:    5 LNPLVAAQEKVRIACEKLGCDPAVYELLKEPQRVIEISIPVKMDDGTVKVFKGWRSAHSSAVGPSKGGVRFHPNVNMDEVKALSLWMTFKGGALGLPYGGGKGGICVDPAELSERELEQLSRGWVRGLYKYLGDRIDIPAPDVNTNGQIMSWFVDEYVKLNGERMDIGTFTGKPVAFGGSEGRNEATGFGV 195
[Close]
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE3_BOVIN (Glutamate dehydrogenase 1, mitochondrial OS=Bos taurus GN=GLUD1 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.203e-36
Identity = 80/163 (49.08%), Postives = 104/163 (63.80%), Query Frame = 3 
Query:  249 IPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKI--HDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH----SPAVVTGKPIDLGGSLGREAATGRGVVYATELYL 719
            I +DDGS     G+R QH   R P KGGIRY  +V  DEV ALA LMT+K AV D+P+GGAK G+  +PK  +++ELE++TR FT ++     IG   D+PAPDM T  + M+WI D Y+   GH    + A VTGKPI  GG  GR +ATGRGV +  E ++
Sbjct:  122 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFI 284
[Close]
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_PANTR (Glutamate dehydrogenase 2, mitochondrial OS=Pan troglodytes GN=GLUD2 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.878e-36
Identity = 80/163 (49.08%), Postives = 103/163 (63.19%), Query Frame = 3 
Query:  249 IPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKI--HDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH----SPAVVTGKPIDLGGSLGREAATGRGVVYATELYL 719
            I +DDGS     G+R QH   R P KGGIRY  +V  DEV ALA LMT+K AV D+P+GGAK G+  +PK  + +ELE++TR FT ++     IG   D+PAPDM T  + M+WI D Y+   GH    + A VTGKPI  GG  GR +ATGRGV +  E ++
Sbjct:  122 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTENELEKITRRFTMELAKKGFIGPGVDVPAPDMNTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFI 284
[Close]
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_HUMAN (Glutamate dehydrogenase 2, mitochondrial OS=Homo sapiens GN=GLUD2 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.878e-36
Identity = 80/163 (49.08%), Postives = 103/163 (63.19%), Query Frame = 3 
Query:  249 IPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKI--HDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH----SPAVVTGKPIDLGGSLGREAATGRGVVYATELYL 719
            I +DDGS     G+R QH   R P KGGIRY  +V  DEV ALA LMT+K AV D+P+GGAK G+  +PK  + +ELE++TR FT ++     IG   D+PAPDM T  + M+WI D Y+   GH    + A VTGKPI  GG  GR +ATGRGV +  E ++
Sbjct:  122 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTENELEKITRRFTMELAKKGFIGPGVDVPAPDMNTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFI 284
[Close]
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_GORGO (Glutamate dehydrogenase 2, mitochondrial OS=Gorilla gorilla gorilla GN=GLUD2 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.878e-36
Identity = 80/163 (49.08%), Postives = 103/163 (63.19%), Query Frame = 3 
Query:  249 IPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKI--HDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH----SPAVVTGKPIDLGGSLGREAATGRGVVYATELYL 719
            I +DDGS     G+R QH   R P KGGIRY  +V  DEV ALA LMT+K AV D+P+GGAK G+  +PK  + +ELE++TR FT ++     IG   D+PAPDM T  + M+WI D Y+   GH    + A VTGKPI  GG  GR +ATGRGV +  E ++
Sbjct:  122 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTENELEKITRRFTMELAKKGFIGPGVDVPAPDMNTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFI 284
[Close]
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE3_RAT (Glutamate dehydrogenase 1, mitochondrial OS=Rattus norvegicus GN=Glud1 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.878e-36
Identity = 80/163 (49.08%), Postives = 104/163 (63.80%), Query Frame = 3 
Query:  249 IPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKI--HDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH----SPAVVTGKPIDLGGSLGREAATGRGVVYATELYL 719
            I +DDGS     G+R QH   R P KGGIRY  +V  DEV ALA LMT+K AV D+P+GGAK G+  +PK  +++ELE++TR FT ++     IG   D+PAPDM T  + M+WI D Y+   GH    + A VTGKPI  GG  GR +ATGRGV +  E ++
Sbjct:  122 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFI 284
[Close]
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE3_MOUSE (Glutamate dehydrogenase 1, mitochondrial OS=Mus musculus GN=Glud1 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.878e-36
Identity = 80/163 (49.08%), Postives = 104/163 (63.80%), Query Frame = 3 
Query:  249 IPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKI--HDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH----SPAVVTGKPIDLGGSLGREAATGRGVVYATELYL 719
            I +DDGS     G+R QH   R P KGGIRY  +V  DEV ALA LMT+K AV D+P+GGAK G+  +PK  +++ELE++TR FT ++     IG   D+PAPDM T  + M+WI D Y+   GH    + A VTGKPI  GG  GR +ATGRGV +  E ++
Sbjct:  122 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFI 284
[Close]
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE3_HUMAN (Glutamate dehydrogenase 1, mitochondrial OS=Homo sapiens GN=GLUD1 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.878e-36
Identity = 80/163 (49.08%), Postives = 104/163 (63.80%), Query Frame = 3 
Query:  249 IPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKI--HDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH----SPAVVTGKPIDLGGSLGREAATGRGVVYATELYL 719
            I +DDGS     G+R QH   R P KGGIRY  +V  DEV ALA LMT+K AV D+P+GGAK G+  +PK  +++ELE++TR FT ++     IG   D+PAPDM T  + M+WI D Y+   GH    + A VTGKPI  GG  GR +ATGRGV +  E ++
Sbjct:  122 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFI 284
[Close]
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_PONPY (Glutamate dehydrogenase 2, mitochondrial OS=Pongo pygmaeus GN=GLUD2 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.759e-36
Identity = 80/163 (49.08%), Postives = 103/163 (63.19%), Query Frame = 3 
Query:  249 IPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKI--HDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH----SPAVVTGKPIDLGGSLGREAATGRGVVYATELYL 719
            I +DDGS     G+R QH   R P KGGIRY  +V  DEV ALA LMT+K AV D+P+GGAK G+  +PK  + +ELE++TR FT ++     IG   D+PAPDM T  + M+WI D Y+   GH    + A VTGKPI  GG  GR +ATGRGV +  E ++
Sbjct:  122 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTENELEKITRRFTMELAKKGFIGPGIDVPAPDMNTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFI 284
The following BLAST results are available for this feature:
BLAST of FC920529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
DHE4_SULSH3.632e-3952.50NADP-specific glutamate dehydrogenase (Fragment) O... [more]
DHE2_PEPAS8.091e-3943.98NAD-specific glutamate dehydrogenase OS=Peptostrep... [more]
DHE3_BOVIN2.203e-3649.08Glutamate dehydrogenase 1, mitochondrial OS=Bos ta... [more]
DHE4_PANTR2.878e-3649.08Glutamate dehydrogenase 2, mitochondrial OS=Pan tr... [more]
DHE4_HUMAN2.878e-3649.08Glutamate dehydrogenase 2, mitochondrial OS=Homo s... [more]
DHE4_GORGO2.878e-3649.08Glutamate dehydrogenase 2, mitochondrial OS=Gorill... [more]
DHE3_RAT2.878e-3649.08Glutamate dehydrogenase 1, mitochondrial OS=Rattus... [more]
DHE3_MOUSE2.878e-3649.08Glutamate dehydrogenase 1, mitochondrial OS=Mus mu... [more]
DHE3_HUMAN2.878e-3649.08Glutamate dehydrogenase 1, mitochondrial OS=Homo s... [more]
DHE4_PONPY3.759e-3649.08Glutamate dehydrogenase 2, mitochondrial OS=Pongo ... [more]

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Properties
Property NameValue
Genbank descriptionC32009E12EF RVDevelop1 Citrus clementina cDNA clone C32009E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920529 ID=FC920529; Name=FC920529; organism=Citrus clementina; type=EST; length=743bp
GATTCATTCACATTCGCATTCACAAAAGCTAATTCATTCATTCATTCATT
CATATATTCTTGTTCAAAAGCCCCATCAGTGGTTTTAGCTCTCTTTTAAC
TTGTTTCGAAAGTTTCAGAATCATCGTCATGAACGCTCTTGCAGCAACGA
GCCGTAACTTTCGCAACGCTGCACGCATTCTTGGGCTTGACTCTAAGCTT
GAGAGGAGTCTTCTGATCCCTTTTAGAGAGATCAAAGTGGAGTGCACTAT
CCCCAAAGATGATGGAAGTCTGGTTTCGTACGTTGGATTTAGAGTACAGC
ATGATGACGCACGTGGGCCCATGAAGGGAGGCATCAGATATCATCCTGAG
GTTGATCCTGATGAAGTAAATGCTCTGGCTCAACTAATGACCTGGAAGAC
TGCTGTGGCAGATATACCATATGGTGGAGCAAAGGGTGGAATTGGATGCA
GCCCAAAAGAATTAAGCAACAGTGAGCTGGAACGTCTAACTCGCGTTTTC
ACTCAGAAGATACATGACCTCATTGGAATCCATACTGACATACCAGCCCC
GGACATGGGAACAAATGCCCAGACTATGGCATGGATTTTGGATGAGTACT
CAAAATTTCATGGTCACTCTCCTGCTGTCGTCACAGGAAAGCCCATTGAT
CTTGGCGGATCACTAGGTAGAGAGGCTGCAACTGGGCGTGGTGTCGTTTA
TGCTACAGAGCTCTACTTGCTGAACATGGACAGGCATTAGGGA
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