FC920529

Overview
NameFC920529
Unique NameFC920529
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920529_ssr32 microsatellite FC920529_ssr32:32..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_HYLLA (Glutamate dehydrogenase 2, mitochondrial OS=Hylobates lar GN=GLUD2 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.759e-36
Identity = 80/163 (49.08%), Postives = 103/163 (63.19%), Query Frame = 3
Query:  249 IPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKI--HDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH----SPAVVTGKPIDLGGSLGREAATGRGVVYATELYL 719
            I +DDGS     G+R QH   R P KGGIRY  +V  DEV ALA LMT+K AV D+P+GGAK G+  +PK  + +ELE++TR FT ++     IG   D+PAPDM T  + M+WI D Y+   GH    + A VTGKPI  GG  GR +ATGRGV +  E ++
Sbjct:  119 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSADVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTENELEKITRRFTMELAKKGFIGPGIDVPAPDMNTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFI 281          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE3_DROME (Glutamate dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=Gdh PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 3.182e-35
Identity = 78/169 (46.15%), Postives = 107/169 (63.31%), Query Frame = 3
Query:  231 IKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKI--HDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH----SPAVVTGKPIDLGGSLGREAATGRGVVYATELYL 719
            I++   + +D G+     G+R QH   + P KGGIR+  +V  DEV AL+ LMT+K A  D+P+GGAK G+  +PKE S  ELE++TR FT ++     IG   D+PAPDMGT  + M+WI D Y+K  GH    + A VTGKPI+ GG  GR +ATGRGV +  E ++
Sbjct:  107 IEIAFPLRRDAGNYEMITGYRAQHSTHKTPTKGGIRFSLDVSRDEVKALSALMTFKCACVDVPFGGAKAGLKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGEREMSWIADTYAKTIGHLDINAHACVTGKPINQGGIHGRVSATGRGVFHGLENFI 275          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE3_DICDI (Glutamate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=gluD PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.427e-35
Identity = 80/168 (47.62%), Postives = 103/168 (61.31%), Query Frame = 3
Query:  231 IKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKI--HDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH---SPAVVTGKPIDLGGSLGREAATGRGVVYATELYL 719
            ++VE  I  + G +    G+R QH   R P KGGIR+  EVD  EV ALA LMT+K AV D+P+GGAKGG+   PK+ + ++ E++TR +T  +   + IG   D+PAPDMGT  Q MAWI D Y  F+ +   S A VTGKPI  GG  GR  ATG GV Y    +L
Sbjct:   71 LRVEFPIKNEHGDVDIIAGYRAQHSHHRLPCKGGIRFSEEVDLQEVMALASLMTYKCAVVDVPFGGAKGGVRIDPKKYTVAQREKITRAYTLLLCQKNFIGPGVDVPAPDMGTGEQEMAWIRDTYQAFNTNDVDSMACVTGKPISSGGIRGRTEATGLGVFYGIREFL 238          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE3_CHAAC (Glutamate dehydrogenase, mitochondrial OS=Chaenocephalus aceratus GN=glud1 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.024e-33
Identity = 77/163 (47.24%), Postives = 101/163 (61.96%), Query Frame = 3
Query:  249 IPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKI--HDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSP----AVVTGKPIDLGGSLGREAATGRGVVYATELYL 719
            I +D+G      G+R QH   R P KGGIRY  +V  DEV ALA LMT+K AV D+P+GGAK G+  + K  S++ELE++TR FT ++     IG   D+PAPDM T  + M+WI D Y+    H+     A VTGKPI  GG  GR +ATGRGV +  E ++
Sbjct:   68 IKRDNGEWEVIEGYRAQHSQHRTPCKGGIRYSMDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVRINTKNYSDNELEKITRRFTIELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYANTIAHTDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFM 230          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE3_CHICK (Glutamate dehydrogenase 1, mitochondrial OS=Gallus gallus GN=GLUD1 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.251e-31
Identity = 75/171 (43.86%), Postives = 101/171 (59.06%), Query Frame = 3
Query:  231 IKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKI--HDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH----SPAVVTGKPIDLGGSLGREAATGRGVVYATELYLLN 725
            + V   I +DDG      G+R QH   R P KGGIRY  +V  DEV ALA LMT+K AV D+P+GGAK G+  +PK  ++ +LE++TR FT ++     IG   D+PAP+M T  + M+WI D Y+   GH    + A VT   I  GG  GR +ATGRG+    E ++ N
Sbjct:   62 LSVSFPIKRDDGZWEVIEGYRAQHSHQRTPCKGGIRYSLDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDEDLEKITRRFTMELAKKGFIGPGVDVPAPNMSTGEREMSWIADTYASTIGHYDINAHACVTKPGISQGGIHGRISATGRGLFGHIENFIEN 232          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_PRERU (NAD(P)-specific glutamate dehydrogenase OS=Prevotella ruminicola GN=gdhA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.605e-26
Identity = 61/173 (35.26%), Postives = 99/173 (57.23%), Query Frame = 3
Query:  192 SKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATE 710
            + L   L +P R ++   +   D+G++ + +G+RVQH++A GP KGG+R+H  V+   +  LA   T+K ++  +P GGAKGG    P   S+ E+ R  + F  +++ LIG   D+PA D+G   + + ++  +Y K       ++TGK ++ GGSL R  ATG G VY  E
Sbjct:   44 ANLIERLCVPDRILQFRVSWVDDNGNVQTNLGYRVQHNNAIGPYKGGLRFHKSVNASILKFLAFEQTFKNSLTTLPMGGAKGGSDFDPHGKSDMEVMRFCQAFMNELYRLIGPDEDVPAGDIGVGGREVGYMFGQYKKLTHQFQGILTGKGLEFGGSLIRPEATGYGNVYFLE 216          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_GIBFU (NADP-specific glutamate dehydrogenase OS=Gibberella fujikuroi GN=GDH2 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.899e-25
Identity = 64/173 (36.99%), Postives = 92/173 (53.18%), Query Frame = 3
Query:  216 IPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATELYLLNMDR 734
            IP R I+       D G+L    G+RVQ + A GP KGG+R+HP V+   +  L     +K A+  +  GG KGG    PK  S++E+ R  + F  ++   IG  TD+PA D+G   + + ++   Y KF      V+TGK +  GGSL R  ATG G+VY  E  L + +R
Sbjct:   42 IPERVIQFRVVWNDDKGNLQVNRGYRVQFNGALGPYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLNMGGGKGGADFDPKGKSDAEIRRFCQAFMTELSKHIGAETDVPAGDIGVGGREIGYLFGAYRKFANRWEGVLTGKGLSWGGSLIRPEATGYGLVYYVEYMLKHANR 214          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE3_BACTN (Glutamate dehydrogenase OS=Bacteroides thetaiotaomicron GN=gdhA PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.650e-25
Identity = 63/170 (37.06%), Postives = 93/170 (54.71%), Query Frame = 3
Query:  192 SKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVY 701
            + L   L IP R  +   T   D G++ + +G+RVQH++A GP KGGIR+H  V+   +  LA   T+K ++  +P GG KGG   SP+  SN+E+ R  + F  ++   IG  TD+PA D+G   + + ++   Y K         TGK  + GGSL R  ATG G +Y
Sbjct:   44 ANLIERLCIPDRVFQFRVTWMDDKGNIQTNMGYRVQHNNAIGPYKGGIRFHASVNLSILKFLAFEQTFKNSLTTLPMGGGKGGSDFSPRGKSNAEVMRFVQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLAHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_SCHPO (NADP-specific glutamate dehydrogenase OS=Schizosaccharomyces pombe GN=gdh1 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.527e-24
Identity = 64/174 (36.78%), Postives = 92/174 (52.87%), Query Frame = 3
Query:  216 IPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATELYLLNMDRH 737
            IP R ++   T   D G+     G+RVQ + A GP KGG+R+HP V+   +  L     +K A+  +P GG KGG    PK  S++E+ R ++ F +++   IG  TD+PA D+G     +  +  EY +       VVTGK +  GGS  R  ATG GVVY    Y+ +M  H
Sbjct:   41 IPERVLEFRVTWEDDKGNCRVNTGYRVQFNSALGPYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLPMGGGKGGSDFDPKGKSDNEIRRFSQAFMRQLFRYIGPQTDVPAGDIGVTGFVVMHMFGEYKRLRNEYSGVVTGKHMLTGGSNIRPEATGYGVVY----YVKHMIEH 210          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_YEAST (NADP-specific glutamate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=GDH1 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 9.602e-24
Identity = 58/165 (35.15%), Postives = 91/165 (55.15%), Query Frame = 3
Query:  216 IPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATE 710
            +P R I+   T   D G      G+RVQ++ A+GP KGG+R+HP V+   +  L     +K ++  +  GG KGG+    K  SN+E+ R+   F +++   IG  TD+PA D+G   + + ++   Y  +      V+TGK ++ GGSL R  ATG G+VY T+
Sbjct:   38 VPERIIQFRVTWENDKGEQEVAQGYRVQYNSAKGPYKGGLRFHPSVNLSILKFLGFEQIFKNSLTGLDMGGGKGGLCVDLKGRSNNEIRRICYAFMRELSRHIGQDTDVPAGDIGVGGREIGYLFGAYRSYKNSWEGVLTGKGLNWGGSLIRPEATGYGLVYYTQ 202          
The following BLAST results are available for this feature:
BLAST of FC920529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
DHE4_HYLLA3.759e-3649.08Glutamate dehydrogenase 2, mitochondrial OS=Hyloba... [more]
DHE3_DROME3.182e-3546.15Glutamate dehydrogenase, mitochondrial OS=Drosophi... [more]
DHE3_DICDI5.427e-3547.62Glutamate dehydrogenase, mitochondrial OS=Dictyost... [more]
DHE3_CHAAC1.024e-3347.24Glutamate dehydrogenase, mitochondrial OS=Chaenoce... [more]
DHE3_CHICK1.251e-3143.86Glutamate dehydrogenase 1, mitochondrial OS=Gallus... [more]
DHE4_PRERU4.605e-2635.26NAD(P)-specific glutamate dehydrogenase OS=Prevote... [more]
DHE4_GIBFU3.899e-2536.99NADP-specific glutamate dehydrogenase OS=Gibberell... [more]
DHE3_BACTN6.650e-2537.06Glutamate dehydrogenase OS=Bacteroides thetaiotaom... [more]
DHE4_SCHPO2.527e-2436.78NADP-specific glutamate dehydrogenase OS=Schizosac... [more]
DHE4_YEAST9.602e-2435.15NADP-specific glutamate dehydrogenase 1 OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionC32009E12EF RVDevelop1 Citrus clementina cDNA clone C32009E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920529 ID=FC920529; Name=FC920529; organism=Citrus clementina; type=EST; length=743bp
GATTCATTCACATTCGCATTCACAAAAGCTAATTCATTCATTCATTCATT
CATATATTCTTGTTCAAAAGCCCCATCAGTGGTTTTAGCTCTCTTTTAAC
TTGTTTCGAAAGTTTCAGAATCATCGTCATGAACGCTCTTGCAGCAACGA
GCCGTAACTTTCGCAACGCTGCACGCATTCTTGGGCTTGACTCTAAGCTT
GAGAGGAGTCTTCTGATCCCTTTTAGAGAGATCAAAGTGGAGTGCACTAT
CCCCAAAGATGATGGAAGTCTGGTTTCGTACGTTGGATTTAGAGTACAGC
ATGATGACGCACGTGGGCCCATGAAGGGAGGCATCAGATATCATCCTGAG
GTTGATCCTGATGAAGTAAATGCTCTGGCTCAACTAATGACCTGGAAGAC
TGCTGTGGCAGATATACCATATGGTGGAGCAAAGGGTGGAATTGGATGCA
GCCCAAAAGAATTAAGCAACAGTGAGCTGGAACGTCTAACTCGCGTTTTC
ACTCAGAAGATACATGACCTCATTGGAATCCATACTGACATACCAGCCCC
GGACATGGGAACAAATGCCCAGACTATGGCATGGATTTTGGATGAGTACT
CAAAATTTCATGGTCACTCTCCTGCTGTCGTCACAGGAAAGCCCATTGAT
CTTGGCGGATCACTAGGTAGAGAGGCTGCAACTGGGCGTGGTGTCGTTTA
TGCTACAGAGCTCTACTTGCTGAACATGGACAGGCATTAGGGA
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