FC920529

Overview
NameFC920529
Unique NameFC920529
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920529_ssr32 microsatellite FC920529_ssr32:32..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_SACBA (NADP-specific glutamate dehydrogenase 1 OS=Saccharomyces bayanus GN=GDH1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.254e-23
Identity = 58/165 (35.15%), Postives = 91/165 (55.15%), Query Frame = 3
Query:  216 IPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATE 710
            +P R I+   T   D G      G+RVQ++ A+GP KGG+R+HP V+   +  L     +K ++  +  GG KGG+    K  SN+E+ R+   F +++   IG  TD+PA D+G   + + ++   Y  +      V+TGK ++ GGSL R  ATG G+VY T+
Sbjct:   38 VPERIIQFRVTWENDKGEQEVAQGYRVQYNSAKGPYKGGLRFHPSVNLSILKFLGFEQIFKNSLTGLDMGGGKGGLCVDLKGRSNNEIRRICYAFMRELSRHIGQDTDVPAGDIGVGGREIGYLFGAYRTYKNSWEGVLTGKGLNWGGSLIRPEATGYGLVYYTQ 202          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_AGABI (NADP-specific glutamate dehydrogenase OS=Agaricus bisporus GN=gdhA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.254e-23
Identity = 60/165 (36.36%), Postives = 88/165 (53.33%), Query Frame = 3
Query:  216 IPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATE 710
            +P R ++   T   D G      GFRVQ++ A GP KGG+R HP V+   +  L    T+K A+  +  GG KGG    PK  S++E+ R    F  ++   IG  TD+PA D+GT A+ + ++   Y +       ++TGK I+ GGS  R  ATG G++Y  E
Sbjct:   39 VPERVLQFRVTWEDDQGKPQVNRGFRVQYNSALGPYKGGLRLHPTVNLSILKFLGFEQTFKNALTGLSMGGGKGGSDFDPKGKSDNEIRRFCVAFMSELFRHIGQDTDVPAGDIGTGAREIGFLFGAYRRLKNEFTGMLTGKGINWGGSFIRPEATGYGLIYYVE 203          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_PSYT1 (NADP-specific glutamate dehydrogenase OS=Psychrobacter sp. (strain TAD1) GN=gdhA PE=1 SV=4)

HSP 1 Score: 109.383 bits (272), Expect = 2.139e-23
Identity = 61/178 (34.27%), Postives = 91/178 (51.12%), Query Frame = 3
Query:  195 KLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATELYLLNM 728
            K+   L+ P R          D+G +    G+RVQ  +A GP KGG+R+HP V+   +  L     +K A+  +P GG KGG    PK  ++SE+ R    F +++H  +    D+PA D+G   + ++++   Y      S  V+TGK +  GGSL R  ATG G VY    +L NM
Sbjct:   45 KVFERLVEPDRVFGFRVNWEDDNGEIQINRGWRVQFSNALGPYKGGLRFHPTVNQSVLKFLGFEQIFKNALTGLPIGGGKGGSDFDPKGKTDSEIRRFCYAFMRELHHYVNKDMDVPAGDIGVGGREVSYMFAMYKNLTRESTGVITGKGVGFGGSLMRTEATGYGAVY----FLQNM 218          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_NEUSI (NADP-specific glutamate dehydrogenase OS=Neurospora sitophila GN=GDH PE=2 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 2.139e-23
Identity = 60/162 (37.04%), Postives = 86/162 (53.09%), Query Frame = 3
Query:  216 IPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVY 701
            IP R I+       D+G++    G+RVQ + A GP KGG+R HP V+   +  L     +K A+  +  GG KGG    PK  S++E+ R    F  ++H  IG  TD+PA D+G   + + ++   Y K       V+TGK +  GGSL R  ATG G+VY
Sbjct:   42 IPERVIQFRVVWEDDNGNVQVNRGYRVQFNSALGPYKGGLRLHPSVNLSILKFLGFEQIFKNALTGLSMGGGKGGADFDPKGKSDAEIRRFCCAFMAELHKHIGADTDVPAGDIGVGGREIGYMFGAYRKAANRFEGVLTGKGLSWGGSLIRPEATGYGLVY 203          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_NEUIN (NADP-specific glutamate dehydrogenase OS=Neurospora intermedia GN=GDH PE=2 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 2.139e-23
Identity = 60/162 (37.04%), Postives = 86/162 (53.09%), Query Frame = 3
Query:  216 IPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVY 701
            IP R I+       D+G++    G+RVQ + A GP KGG+R HP V+   +  L     +K A+  +  GG KGG    PK  S++E+ R    F  ++H  IG  TD+PA D+G   + + ++   Y K       V+TGK +  GGSL R  ATG G+VY
Sbjct:   42 IPERVIQFRVVWEDDNGNVQVNRGYRVQFNSALGPYKGGLRLHPSVNLSILKFLGFEQIFKNALTGLSMGGGKGGADFDPKGKSDAEIRRFCCAFMAELHKHIGADTDVPAGDIGVGGREIGYMFGAYRKAANRFEGVLTGKGLSWGGSLIRPEATGYGLVY 203          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_NEUCR (NADP-specific glutamate dehydrogenase OS=Neurospora crassa GN=gdh PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 2.139e-23
Identity = 60/162 (37.04%), Postives = 86/162 (53.09%), Query Frame = 3
Query:  216 IPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVY 701
            IP R I+       D+G++    G+RVQ + A GP KGG+R HP V+   +  L     +K A+  +  GG KGG    PK  S++E+ R    F  ++H  IG  TD+PA D+G   + + ++   Y K       V+TGK +  GGSL R  ATG G+VY
Sbjct:   42 IPERVIQFRVVWEDDNGNVQVNRGYRVQFNSALGPYKGGLRLHPSVNLSILKFLGFEQIFKNALTGLSMGGGKGGADFDPKGKSDAEIRRFCCAFMAELHKHIGADTDVPAGDIGVGGREIGYMFGAYRKAANRFEGVLTGKGLSWGGSLIRPEATGYGLVY 203          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_LACBS (NADP-specific glutamate dehydrogenase OS=Laccaria bicolor (strain S238N-H82) GN=GDHA PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.139e-23
Identity = 60/165 (36.36%), Postives = 85/165 (51.52%), Query Frame = 3
Query:  216 IPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATE 710
            IP R ++       D G      GFRVQ++ A GP KGG+R HP V+   +  L    T+K A+  +  GG KGG    PK  S+ E+ R    F  ++   IG  TD+PA D+GT A+ + ++   Y K       ++TGK +  GGS  R  ATG G++Y  E
Sbjct:   39 IPERVLQFRVVWEDDQGKAQVNRGFRVQYNSALGPYKGGLRLHPSVNLSILKFLGFEQTFKNALTGLSMGGGKGGSDFDPKGKSDGEIRRFCTSFMSELFRHIGQDTDVPAGDIGTGAREIGYLFGAYKKLQNEFVGMLTGKGLAWGGSFIRPEATGYGLIYYVE 203          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE5_YEAST (NADP-specific glutamate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=GDH3 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.794e-23
Identity = 58/165 (35.15%), Postives = 91/165 (55.15%), Query Frame = 3
Query:  216 IPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATE 710
            +P R I+   T   D+G      G+RVQ + A+GP KGG+R+HP V+   +  L     +K A+  +  GG KGG+    K  S++E+ R+   F +++   IG  TD+PA D+G   + + ++   Y  +      V+TGK ++ GGSL R  ATG G+VY T+
Sbjct:   39 VPERIIQFRVTWENDNGEQEVAQGYRVQFNSAKGPYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLDMGGGKGGLCVDLKGKSDNEIRRICYAFMRELSRHIGKDTDVPAGDIGVGGREIGYLFGAYRSYKNSWEGVLTGKGLNWGGSLIRPEATGFGLVYYTQ 203          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_TUBBO (NADP-specific glutamate dehydrogenase OS=Tuber borchii GN=GDH PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.794e-23
Identity = 60/161 (37.27%), Postives = 86/161 (53.42%), Query Frame = 3
Query:  219 PFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVY 701
            P R I+   T   D G+     G+RVQ + A GP KGG+R+HP V+   +  L    T+K A+  +  GG KGG    PK  S++E+ R    F +++   IG  TD+PA D+G   + + ++   Y  +      V+TGK I  GGSL R  ATG G+VY
Sbjct:   42 PERVIQFRVTWEDDKGNFQVNRGYRVQFNSALGPYKGGLRFHPTVNLSILKFLGFEQTFKNALTGLNMGGGKGGSDFDPKGKSDNEIRRFCYSFMRELSKHIGQFTDVPAGDIGVGGREIGYLFGAYESYKNQFEGVLTGKGITWGGSLIRPEATGYGLVY 202          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_HELPJ (NADP-specific glutamate dehydrogenase OS=Helicobacter pylori J99 GN=gdhA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.794e-23
Identity = 63/171 (36.84%), Postives = 90/171 (52.63%), Query Frame = 3
Query:  198 LERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATE 710
            LER L+ P REI        D+  +    G RV+ + A GP KGG+R+HP V+   +  L      K ++  +  GGAKGG    PKE S  E+ R  + F  +++  IG  TD+PA D+G   + + ++  +Y K       V+TGK +  GGSL R+ ATG G VY  E
Sbjct:   47 LER-LIEPEREIFFRVCWLDDNHQIQVNRGCRVEFNSAIGPYKGGLRFHPSVNESVIKFLGFEQVLKNSLTTLAMGGAKGGSDFDPKEKSEHEIMRFCQAFMNELYRHIGATTDVPAGDIGVGEREIGYLFGQYKKLVNRFEGVLTGKGLTYGGSLCRKEATGYGCVYFAE 216          
The following BLAST results are available for this feature:
BLAST of FC920529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
DHE4_SACBA1.254e-2335.15NADP-specific glutamate dehydrogenase 1 OS=Sacchar... [more]
DHE4_AGABI1.254e-2336.36NADP-specific glutamate dehydrogenase OS=Agaricus ... [more]
DHE4_PSYT12.139e-2334.27NADP-specific glutamate dehydrogenase OS=Psychroba... [more]
DHE4_NEUSI2.139e-2337.04NADP-specific glutamate dehydrogenase OS=Neurospor... [more]
DHE4_NEUIN2.139e-2337.04NADP-specific glutamate dehydrogenase OS=Neurospor... [more]
DHE4_NEUCR2.139e-2337.04NADP-specific glutamate dehydrogenase OS=Neurospor... [more]
DHE4_LACBS2.139e-2336.36NADP-specific glutamate dehydrogenase OS=Laccaria ... [more]
DHE5_YEAST2.794e-2335.15NADP-specific glutamate dehydrogenase 2 OS=Sacchar... [more]
DHE4_TUBBO2.794e-2337.27NADP-specific glutamate dehydrogenase OS=Tuber bor... [more]
DHE4_HELPJ2.794e-2336.84NADP-specific glutamate dehydrogenase OS=Helicobac... [more]

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Properties
Property NameValue
Genbank descriptionC32009E12EF RVDevelop1 Citrus clementina cDNA clone C32009E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920529 ID=FC920529; Name=FC920529; organism=Citrus clementina; type=EST; length=743bp
GATTCATTCACATTCGCATTCACAAAAGCTAATTCATTCATTCATTCATT
CATATATTCTTGTTCAAAAGCCCCATCAGTGGTTTTAGCTCTCTTTTAAC
TTGTTTCGAAAGTTTCAGAATCATCGTCATGAACGCTCTTGCAGCAACGA
GCCGTAACTTTCGCAACGCTGCACGCATTCTTGGGCTTGACTCTAAGCTT
GAGAGGAGTCTTCTGATCCCTTTTAGAGAGATCAAAGTGGAGTGCACTAT
CCCCAAAGATGATGGAAGTCTGGTTTCGTACGTTGGATTTAGAGTACAGC
ATGATGACGCACGTGGGCCCATGAAGGGAGGCATCAGATATCATCCTGAG
GTTGATCCTGATGAAGTAAATGCTCTGGCTCAACTAATGACCTGGAAGAC
TGCTGTGGCAGATATACCATATGGTGGAGCAAAGGGTGGAATTGGATGCA
GCCCAAAAGAATTAAGCAACAGTGAGCTGGAACGTCTAACTCGCGTTTTC
ACTCAGAAGATACATGACCTCATTGGAATCCATACTGACATACCAGCCCC
GGACATGGGAACAAATGCCCAGACTATGGCATGGATTTTGGATGAGTACT
CAAAATTTCATGGTCACTCTCCTGCTGTCGTCACAGGAAAGCCCATTGAT
CTTGGCGGATCACTAGGTAGAGAGGCTGCAACTGGGCGTGGTGTCGTTTA
TGCTACAGAGCTCTACTTGCTGAACATGGACAGGCATTAGGGA
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