FC920529

Overview
NameFC920529
Unique NameFC920529
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920529_ssr32 microsatellite FC920529_ssr32:32..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_ECOLI (NADP-specific glutamate dehydrogenase OS=Escherichia coli (strain K12) GN=gdhA PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.034e-22
Identity = 63/176 (35.80%), Postives = 90/176 (51.14%), Query Frame = 3
Query:  192 SKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATELYL 719
            S LER L+ P R I+       D   +     +RVQ   A GP KGG+R+HP V+   +  L    T+K A+  +P GG KGG    PK  S  E+ R  +    +++  +G  TD+PA D+G   + + ++     K   ++  V TGK +  GGSL R  ATG G+VY TE  L
Sbjct:   49 SLLER-LVEPERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAML 223          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_UNKP (NADP-specific glutamate dehydrogenase OS=Unknown prokaryotic organism GN=gdhA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.269e-22
Identity = 62/174 (35.63%), Postives = 91/174 (52.30%), Query Frame = 3
Query:  198 LERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATELYL 719
            LER L+ P R I+   +   D G +     FRVQ + A GP KGG+R+HP V+   +  L    T+K A+  +P GG KGG    PK  S   + R  +    +++  +G  TD+PA D+G   + + ++     K   ++  V TGK +  GGSL R  ATG G+VY T+  L
Sbjct:   51 LER-LVEPERIIQFRVSWVDDRGQVQVNRAFRVQFNSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSQGRIMRFCQALMTELYRHLGPDTDVPAGDIGDGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTDAML 223          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE2_PORGI (NAD-specific glutamate dehydrogenase OS=Porphyromonas gingivalis GN=gdh PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.269e-22
Identity = 56/148 (37.84%), Postives = 80/148 (54.05%), Query Frame = 3
Query:  258 DDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVY 701
            D G +   +G+RVQ ++A GP KGGIR+HP V+   +  L     +K A+  +P GG KGG   SPK  S +E+ R  + F  ++   IG  TDIPA D+G   + + ++   Y K        +TGK  + GGS  R  +TG G VY
Sbjct:   66 DQGKVQVNIGYRVQFNNAIGPYKGGIRFHPSVNLSILKFLGFEQMFKNALTTLPMGGGKGGADFSPKGKSEAEIMRFCQSFMTELWRNIGPDTDIPAGDIGVGGREVGYMFGMYKKLAREHTGTLTGKGFEFGGSRLRPESTGFGAVY 213          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE2_PORG3 (NAD-specific glutamate dehydrogenase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=gdh PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.269e-22
Identity = 56/148 (37.84%), Postives = 80/148 (54.05%), Query Frame = 3
Query:  258 DDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVY 701
            D G +   +G+RVQ ++A GP KGGIR+HP V+   +  L     +K A+  +P GG KGG   SPK  S +E+ R  + F  ++   IG  TDIPA D+G   + + ++   Y K        +TGK  + GGS  R  +TG G VY
Sbjct:   66 DQGKVQVNIGYRVQFNNAIGPYKGGIRFHPSVNLSILKFLGFEQMFKNALTTLPMGGGKGGADFSPKGKSEAEIMRFCQSFMTELWRNIGPDTDIPAGDIGVGGREVGYMFGMYKKLAREHTGTLTGKGFEFGGSRLRPESTGFGAVY 213          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE2_BACFR (NAD-specific glutamate dehydrogenase OS=Bacteroides fragilis GN=gdhB PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.269e-22
Identity = 59/170 (34.71%), Postives = 90/170 (52.94%), Query Frame = 3
Query:  192 SKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVY 701
            SK+   L+ P R      T   D G + + +G+RVQ ++A GP KGGIR+H  V+   +  L    T+K A+  +P GG KGG   SP+  S++E+ R  + F  ++   +G   D+PA D+G   + + ++   Y K         TGK ++ GGSL R  ATG G +Y
Sbjct:   44 SKIIERLVEPDRIFTFRVTWVDDKGEVQTNLGYRVQFNNAIGPYKGGIRFHASVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFSPRGKSDAEIMRFCQAFMLELWRHLGPDMDVPAGDIGVGGREVGYMFGMYKKLTREFTGTFTGKGLEFGGSLIRPEATGFGGLY 213          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_PENCH (NADP-specific glutamate dehydrogenase OS=Penicillium chrysogenum GN=GDH PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.882e-22
Identity = 59/165 (35.76%), Postives = 85/165 (51.52%), Query Frame = 3
Query:  216 IPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATE 710
            +P R I+       D G +    G+RVQ + A GP KGG+R+HP V+   +  L     +K A+  +  GG KGG    PK  +++E+ R    F  ++   IG  TD+PA D+G   + + ++  +Y K       V+TGK    GGSL R  ATG GVVY  E
Sbjct:   43 VPERVIQFRVVWEDDKGQVQINRGYRVQFNSALGPYKGGLRFHPTVNLSILKFLGFEQIFKNALTGLNMGGGKGGSDFDPKGKTDNEIRRFCVSFMTELCKHIGADTDVPAGDIGVTGREVGFMFGQYKKIRNQWEGVLTGKGGSWGGSLIRPEATGYGVVYYVE 207          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE2_CLOSY (NAD-specific glutamate dehydrogenase OS=Clostridium symbiosum GN=gdh PE=1 SV=4)

HSP 1 Score: 103.219 bits (256), Expect = 1.533e-21
Identity = 63/172 (36.63%), Postives = 92/172 (53.49%), Query Frame = 3
Query:  198 LERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSLGREAATGRGVVYATE 710
            LER ++IP R I+       D+G +    G+RVQ + A GP KGG+R+ P V+   +  L     +K ++  +P GGAKGG    P   S+ E+ R  + F  +++  IG   D+PA D+G  A+ + ++  +Y K   G    V+TGK    GGSL R  ATG G VY  E
Sbjct:   49 LER-MVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFLGFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVE 219          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_DEBOC (NADP-specific glutamate dehydrogenase OS=Debaryomyces occidentalis GN=GDHA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.826e-21
Identity = 55/157 (35.03%), Postives = 83/157 (52.87%), Query Frame = 3
Query:  216 IPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATG 686
            IP R I+       D+G +    GFRVQ + + GP KGG+R+HP V+   +  L     +K A+  +  GG KGG   +PK  S+ E+ R    F +++   IG  TD+PA D+G   + + ++   Y +   +   V+TGK +  GGSL R  ATG
Sbjct:   44 IPERIIQFRVAWENDNGDVEVNNGFRVQFNSSLGPYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLSMGGGKGGCDFNPKGRSDGEIRRFCVAFMRQLARYIGADTDVPAGDIGVGGREIGYLFGAYKQMQNNWYGVLTGKGLTWGGSLIRPEATG 200          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_CHLSO (NADP-specific glutamate dehydrogenase (Fragment) OS=Chlorella sorokiniana PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.826e-21
Identity = 58/169 (34.32%), Postives = 89/169 (52.66%), Query Frame = 3
Query:  204 RSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATE 710
            + ++ P R I    +   D G+L    GFRVQ+  A GP KGG+R+HP V+   +  LA    +K ++  +P GG KGG    PK  S++E+ R  + F  ++   I    D+PA D+G  A+ + ++  +Y +   +   V+TGK  + GGS  R  ATG G V   E
Sbjct:  126 KQIVEPERVITFRVSWLDDAGNLQVNRGFRVQYSSAIGPYKGGLRFHPSVNLSIMKFLAFEQIFKNSLTTLPMGGGKGGSDFDPKGKSDAEVMRFCQSFMTELQRHISYVQDVPAGDIGVGAREIGYLFGQYKRITKNYTGVLTGKGQEYGGSEIRPEATGYGAVLFVE 294          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE4_BOTFU (NADP-specific glutamate dehydrogenase OS=Botryotinia fuckeliana GN=gdhA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.441e-20
Identity = 56/162 (34.57%), Postives = 81/162 (50.00%), Query Frame = 3
Query:  216 IPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVY 701
            IP R I+       D   +    G+RVQ + A GP KGG+R+HP V+   +  L     +K A+  +  GG KGG    PK  S++E+ R    F +++   IG  TD+PA D+    + + ++   Y         V+TGK    GGSL R  ATG G+VY
Sbjct:   42 IPERVIQFRVVWEDDKNQVQVNRGYRVQFNSALGPYKGGLRFHPTVNLSVLKFLGFEQIFKNALTGLNIGGGKGGADFDPKGKSDNEIRRFCVSFMRELSKHIGADTDVPAGDINVGGREIGFLFGAYKAIQNKWEGVLTGKGGSWGGSLIRPEATGYGLVY 203          
The following BLAST results are available for this feature:
BLAST of FC920529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
DHE4_ECOLI4.034e-2235.80NADP-specific glutamate dehydrogenase OS=Escherich... [more]
DHE4_UNKP5.269e-2235.63NADP-specific glutamate dehydrogenase OS=Unknown p... [more]
DHE2_PORGI5.269e-2237.84NAD-specific glutamate dehydrogenase OS=Porphyromo... [more]
DHE2_PORG35.269e-2237.84NAD-specific glutamate dehydrogenase OS=Porphyromo... [more]
DHE2_BACFR5.269e-2234.71NAD-specific glutamate dehydrogenase OS=Bacteroide... [more]
DHE4_PENCH6.882e-2235.76NADP-specific glutamate dehydrogenase OS=Penicilli... [more]
DHE2_CLOSY1.533e-2136.63NAD-specific glutamate dehydrogenase OS=Clostridiu... [more]
DHE4_DEBOC5.826e-2135.03NADP-specific glutamate dehydrogenase OS=Debaryomy... [more]
DHE4_CHLSO5.826e-2134.32NADP-specific glutamate dehydrogenase (Fragment) O... [more]
DHE4_BOTFU6.441e-2034.57NADP-specific glutamate dehydrogenase OS=Botryotin... [more]

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Properties
Property NameValue
Genbank descriptionC32009E12EF RVDevelop1 Citrus clementina cDNA clone C32009E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920529 ID=FC920529; Name=FC920529; organism=Citrus clementina; type=EST; length=743bp
GATTCATTCACATTCGCATTCACAAAAGCTAATTCATTCATTCATTCATT
CATATATTCTTGTTCAAAAGCCCCATCAGTGGTTTTAGCTCTCTTTTAAC
TTGTTTCGAAAGTTTCAGAATCATCGTCATGAACGCTCTTGCAGCAACGA
GCCGTAACTTTCGCAACGCTGCACGCATTCTTGGGCTTGACTCTAAGCTT
GAGAGGAGTCTTCTGATCCCTTTTAGAGAGATCAAAGTGGAGTGCACTAT
CCCCAAAGATGATGGAAGTCTGGTTTCGTACGTTGGATTTAGAGTACAGC
ATGATGACGCACGTGGGCCCATGAAGGGAGGCATCAGATATCATCCTGAG
GTTGATCCTGATGAAGTAAATGCTCTGGCTCAACTAATGACCTGGAAGAC
TGCTGTGGCAGATATACCATATGGTGGAGCAAAGGGTGGAATTGGATGCA
GCCCAAAAGAATTAAGCAACAGTGAGCTGGAACGTCTAACTCGCGTTTTC
ACTCAGAAGATACATGACCTCATTGGAATCCATACTGACATACCAGCCCC
GGACATGGGAACAAATGCCCAGACTATGGCATGGATTTTGGATGAGTACT
CAAAATTTCATGGTCACTCTCCTGCTGTCGTCACAGGAAAGCCCATTGAT
CTTGGCGGATCACTAGGTAGAGAGGCTGCAACTGGGCGTGGTGTCGTTTA
TGCTACAGAGCTCTACTTGCTGAACATGGACAGGCATTAGGGA
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